Wall clock time and date at job start Wed Apr 1 2020 05:19:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42891 * 1
3 3 C 1.35981 * 116.99735 * 2 1
4 4 N 1.30319 * 120.82947 * 359.97438 * 3 2 1
5 5 S 1.69669 * 107.66431 * 179.78418 * 4 3 2
6 6 C 1.77235 * 95.30161 * 0.30504 * 5 4 3
7 7 C 1.47021 * 127.75694 * 179.97438 * 6 5 4
8 8 O 1.21647 * 119.99665 * 172.21944 * 7 6 5
9 9 N 1.34767 * 120.00586 * 352.22604 * 7 6 5
10 10 C 1.46504 * 119.99834 * 353.92104 * 9 7 6
11 11 C 1.46498 * 120.00294 * 174.19507 * 9 7 6
12 12 H 1.08994 * 109.47077 * 359.97438 * 11 9 7
13 13 C 1.53000 * 109.46885 * 119.99908 * 11 9 7
14 14 C 1.50693 * 109.47171 * 239.99605 * 11 9 7
15 15 H 1.07998 * 120.00525 * 0.02562 * 14 11 9
16 16 C 1.37882 * 120.00232 * 179.97438 * 14 11 9
17 17 N 1.31522 * 119.99673 * 0.02562 * 16 14 11
18 18 Si 1.86800 * 120.00384 * 180.02562 * 16 14 11
19 19 H 1.48497 * 109.47072 * 359.97438 * 18 16 14
20 20 H 1.48496 * 109.47292 * 119.99860 * 18 16 14
21 21 H 1.48504 * 109.46883 * 240.00083 * 18 16 14
22 22 C 1.37669 * 120.82618 * 179.97438 * 3 2 1
23 23 Br 1.89094 * 122.89955 * 0.02562 * 22 3 2
24 24 H 1.09002 * 109.47162 * 180.02562 * 1 2 3
25 25 H 1.09005 * 109.47310 * 299.99778 * 1 2 3
26 26 H 1.09002 * 109.47798 * 59.99759 * 1 2 3
27 27 H 1.08994 * 109.47241 * 84.85845 * 10 9 7
28 28 H 1.09000 * 109.47000 * 204.86354 * 10 9 7
29 29 H 1.09008 * 109.46918 * 324.85610 * 10 9 7
30 30 H 1.08996 * 109.47482 * 299.99608 * 13 11 9
31 31 H 1.09002 * 109.47775 * 60.00414 * 13 11 9
32 32 H 1.09008 * 109.47224 * 180.02562 * 13 11 9
33 33 H 0.96998 * 119.99569 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0462 1.2116 0.0000
4 7 1.3523 2.3147 -0.0005
5 16 2.4466 3.6113 0.0058
6 6 3.9009 2.5983 -0.0002
7 6 5.3039 3.0375 0.0009
8 8 6.1963 2.2224 0.1389
9 7 5.6015 4.3432 -0.1509
10 6 4.5391 5.3067 -0.4497
11 6 6.9882 4.7981 -0.0230
12 1 7.6316 3.9457 0.1946
13 6 7.4330 5.4524 -1.3325
14 6 7.0867 5.8003 1.0981
15 1 6.2047 6.0710 1.6595
16 6 8.3030 6.3709 1.4079
17 7 9.3773 6.0409 0.7245
18 14 8.4253 7.6127 2.7980
19 1 7.0843 7.8105 3.4044
20 1 9.3665 7.1090 3.8303
21 1 8.9222 8.9062 2.2639
22 6 3.4198 1.3036 0.0005
23 35 4.5506 -0.2120 0.0006
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 -0.3635 0.5139 -0.8899
27 1 4.0676 5.6273 0.4792
28 1 4.9654 6.1714 -0.9582
29 1 3.7939 4.8381 -1.0926
30 1 7.3619 4.7276 -2.1434
31 1 6.7896 6.3051 -1.5497
32 1 8.4650 5.7906 -1.2375
33 1 10.2330 6.4421 0.9427
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001443571560.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:04
Heat of formation + Delta-G solvation = -24.381082 kcal
Electronic energy + Delta-G solvation = -20443.958879 eV
Core-core repulsion = 17064.729246 eV
Total energy + Delta-G solvation = -3379.229633 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 347.993 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.42824 -40.74970 -37.82028 -37.11153 -34.92096 -33.43943 -31.89341 -30.53096
-29.00443 -27.94956 -27.26463 -25.95128 -23.56855 -21.78960 -20.19374 -19.60183
-18.84333 -18.41432 -17.49546 -17.35196 -17.15758 -16.37280 -16.31628 -15.70288
-15.05334 -14.74851 -14.53732 -14.49153 -14.12925 -13.53633 -13.38432 -13.25669
-12.96426 -12.73552 -12.72522 -12.59398 -12.34217 -12.16889 -12.12057 -12.07693
-11.85900 -11.33388 -11.16823 -10.75185 -10.63992 -10.49228 -9.59929 -9.33457
-8.12690 -6.28686 -1.25210 -0.40686 0.27613 0.75833 0.83345 1.44830
1.47445 1.57355 1.68436 1.90763 2.25400 2.47263 3.16313 3.21911
3.60885 3.78655 4.13003 4.27569 4.37143 4.51757 4.69201 4.70632
4.82517 4.92253 4.95025 5.05031 5.44639 5.52440 5.66432 5.83926
6.01428 6.14485 6.55783 6.77015 7.06694 7.42784 8.92025
Molecular weight = 347.99amu
Principal moments of inertia in cm(-1)
A = 0.018520 B = 0.003951 C = 0.003535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1511.536340 B = 7084.601334 C = 7919.782168
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.297 6.297
3 C 0.325 3.675
4 N -0.535 5.535
5 S 0.408 5.592
6 C -0.168 4.168
7 C 0.565 3.435
8 O -0.543 6.543
9 N -0.581 5.581
10 C 0.060 3.940
11 C 0.265 3.735
12 H 0.020 0.980
13 C -0.136 4.136
14 C -0.538 4.538
15 H 0.066 0.934
16 C 0.020 3.980
17 N -0.915 5.915
18 Si 0.962 3.038
19 H -0.263 1.263
20 H -0.288 1.288
21 H -0.276 1.276
22 C -0.137 4.137
23 Br 0.025 6.975
24 H 0.132 0.868
25 H 0.062 0.938
26 H 0.065 0.935
27 H 0.077 0.923
28 H 0.104 0.896
29 H 0.082 0.918
30 H 0.022 0.978
31 H 0.053 0.947
32 H 0.071 0.929
33 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.476 -7.345 -3.404 20.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.203 6.203
3 C 0.111 3.889
4 N -0.376 5.376
5 S 0.559 5.441
6 C -0.303 4.303
7 C 0.349 3.651
8 O -0.422 6.422
9 N -0.311 5.311
10 C -0.084 4.084
11 C 0.165 3.835
12 H 0.038 0.962
13 C -0.195 4.195
14 C -0.576 4.576
15 H 0.084 0.916
16 C -0.180 4.180
17 N -0.554 5.554
18 Si 0.788 3.212
19 H -0.187 1.187
20 H -0.215 1.215
21 H -0.201 1.201
22 C -0.238 4.238
23 Br 0.108 6.892
24 H 0.150 0.850
25 H 0.081 0.919
26 H 0.083 0.917
27 H 0.095 0.905
28 H 0.122 0.878
29 H 0.099 0.901
30 H 0.041 0.959
31 H 0.072 0.928
32 H 0.089 0.911
33 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -18.821 -6.956 -3.340 20.342
hybrid contribution 1.101 -0.567 0.699 1.422
sum -17.721 -7.524 -2.641 19.432
Atomic orbital electron populations
1.23303 0.74562 1.05747 1.02816 1.86377 1.24974 1.21313 1.87592
1.19120 0.87828 0.86600 0.95320 1.76333 1.28326 1.02136 1.30830
1.85087 0.85407 1.08123 1.65441 1.26088 1.00981 0.97443 1.05779
1.16984 0.85552 0.83482 0.79058 1.90847 1.47575 1.52851 1.50943
1.48127 1.11099 1.05515 1.66387 1.22146 0.89600 0.94474 1.02215
1.18715 0.76195 0.94026 0.94608 0.96215 1.21924 1.03314 0.98903
0.95315 1.21577 0.95094 1.24301 1.16653 0.91610 1.25662 0.95193
0.98493 0.98700 1.70022 0.99870 1.44188 1.41289 0.85443 0.78316
0.78622 0.78859 1.18713 1.21482 1.20149 1.21396 0.92935 0.94559
1.14897 1.96741 1.63463 1.31831 1.97118 0.84964 0.91894 0.91678
0.90502 0.87762 0.90067 0.95883 0.92803 0.91050 0.92627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 10.43 113.37 1.18 1.64 16
2 O -0.30 -7.18 10.09 -93.34 -0.94 -8.12 16
3 C 0.33 9.01 7.36 84.78 0.62 9.63 16
4 N -0.53 -13.66 11.02 -175.16 -1.93 -15.59 16
5 S 0.41 9.89 19.26 -56.49 -1.09 8.80 16
6 C -0.17 -5.54 6.38 24.55 0.16 -5.39 16
7 C 0.56 23.16 7.64 86.55 0.66 23.82 16
8 O -0.54 -26.26 14.50 -4.18 -0.06 -26.32 16
9 N -0.58 -23.31 2.75 -831.17 -2.29 -25.60 16
10 C 0.06 1.74 8.13 127.77 1.04 2.78 16
11 C 0.27 12.99 2.62 44.24 0.12 13.11 16
12 H 0.02 1.16 6.91 -2.39 -0.02 1.15 16
13 C -0.14 -6.14 8.95 71.98 0.64 -5.50 16
14 C -0.54 -27.46 8.37 25.60 0.21 -27.25 16
15 H 0.07 3.23 7.66 -2.91 -0.02 3.21 16
16 C 0.02 1.02 5.30 84.65 0.45 1.47 16
17 N -0.91 -50.57 11.32 21.45 0.24 -50.33 16
18 Si 0.96 41.26 29.54 68.60 2.03 43.28 16
19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16
20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16
21 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16
22 C -0.14 -4.37 6.30 22.11 0.14 -4.23 16
23 Br 0.02 0.81 31.69 -20.37 -0.65 0.17 16
24 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16
25 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16
26 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16
27 H 0.08 2.01 7.65 -2.39 -0.02 1.99 16
28 H 0.10 2.92 6.42 -2.39 -0.02 2.90 16
29 H 0.08 1.89 5.21 -15.54 -0.08 1.81 16
30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.05 2.14 6.65 -2.39 -0.02 2.13 16
32 H 0.07 3.62 6.07 -2.38 -0.01 3.61 16
33 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16
Total: -1.00 -64.02 310.41 1.63 -62.39
By element:
Atomic # 1 Polarization: 0.15 SS G_CDS: 1.09 Total: 1.24 kcal
Atomic # 6 Polarization: 4.86 SS G_CDS: 5.23 Total: 10.08 kcal
Atomic # 7 Polarization: -87.54 SS G_CDS: -3.98 Total: -91.52 kcal
Atomic # 8 Polarization: -33.44 SS G_CDS: -1.00 Total: -34.44 kcal
Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal
Atomic # 16 Polarization: 9.89 SS G_CDS: -1.09 Total: 8.80 kcal
Atomic # 35 Polarization: 0.81 SS G_CDS: -0.65 Total: 0.17 kcal
Total: -64.02 1.63 -62.39 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001443571560.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.005 kcal
(2) G-P(sol) polarization free energy of solvation -64.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds