Wall clock time and date at job start Wed Apr 1 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35981 * 116.99735 * 2 1 4 4 N 1.30319 * 120.82947 * 359.97438 * 3 2 1 5 5 S 1.69669 * 107.66431 * 179.78418 * 4 3 2 6 6 C 1.77235 * 95.30161 * 0.30504 * 5 4 3 7 7 C 1.47021 * 127.75694 * 179.97438 * 6 5 4 8 8 O 1.21647 * 119.99665 * 172.21944 * 7 6 5 9 9 N 1.34767 * 120.00586 * 352.22604 * 7 6 5 10 10 C 1.46504 * 119.99834 * 353.92104 * 9 7 6 11 11 C 1.46498 * 120.00294 * 174.19507 * 9 7 6 12 12 H 1.08994 * 109.47077 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.46885 * 119.99908 * 11 9 7 14 14 C 1.50693 * 109.47171 * 239.99605 * 11 9 7 15 15 H 1.07998 * 120.00525 * 0.02562 * 14 11 9 16 16 C 1.37882 * 120.00232 * 179.97438 * 14 11 9 17 17 N 1.31522 * 119.99673 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00384 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47072 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47292 * 119.99860 * 18 16 14 21 21 H 1.48504 * 109.46883 * 240.00083 * 18 16 14 22 22 C 1.37669 * 120.82618 * 179.97438 * 3 2 1 23 23 Br 1.89094 * 122.89955 * 0.02562 * 22 3 2 24 24 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47310 * 299.99778 * 1 2 3 26 26 H 1.09002 * 109.47798 * 59.99759 * 1 2 3 27 27 H 1.08994 * 109.47241 * 84.85845 * 10 9 7 28 28 H 1.09000 * 109.47000 * 204.86354 * 10 9 7 29 29 H 1.09008 * 109.46918 * 324.85610 * 10 9 7 30 30 H 1.08996 * 109.47482 * 299.99608 * 13 11 9 31 31 H 1.09002 * 109.47775 * 60.00414 * 13 11 9 32 32 H 1.09008 * 109.47224 * 180.02562 * 13 11 9 33 33 H 0.96998 * 119.99569 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 7 1.3523 2.3147 -0.0005 5 16 2.4466 3.6113 0.0058 6 6 3.9009 2.5983 -0.0002 7 6 5.3039 3.0375 0.0009 8 8 6.1963 2.2224 0.1389 9 7 5.6015 4.3432 -0.1509 10 6 4.5391 5.3067 -0.4497 11 6 6.9882 4.7981 -0.0230 12 1 7.6316 3.9457 0.1946 13 6 7.4330 5.4524 -1.3325 14 6 7.0867 5.8003 1.0981 15 1 6.2047 6.0710 1.6595 16 6 8.3030 6.3709 1.4079 17 7 9.3773 6.0409 0.7245 18 14 8.4253 7.6127 2.7980 19 1 7.0843 7.8105 3.4044 20 1 9.3665 7.1090 3.8303 21 1 8.9222 8.9062 2.2639 22 6 3.4198 1.3036 0.0005 23 35 4.5506 -0.2120 0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 4.0676 5.6273 0.4792 28 1 4.9654 6.1714 -0.9582 29 1 3.7939 4.8381 -1.0926 30 1 7.3619 4.7276 -2.1434 31 1 6.7896 6.3051 -1.5497 32 1 8.4650 5.7906 -1.2375 33 1 10.2330 6.4421 0.9427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443571560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:04 Heat of formation + Delta-G solvation = -24.381082 kcal Electronic energy + Delta-G solvation = -20443.958879 eV Core-core repulsion = 17064.729246 eV Total energy + Delta-G solvation = -3379.229633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42824 -40.74970 -37.82028 -37.11153 -34.92096 -33.43943 -31.89341 -30.53096 -29.00443 -27.94956 -27.26463 -25.95128 -23.56855 -21.78960 -20.19374 -19.60183 -18.84333 -18.41432 -17.49546 -17.35196 -17.15758 -16.37280 -16.31628 -15.70288 -15.05334 -14.74851 -14.53732 -14.49153 -14.12925 -13.53633 -13.38432 -13.25669 -12.96426 -12.73552 -12.72522 -12.59398 -12.34217 -12.16889 -12.12057 -12.07693 -11.85900 -11.33388 -11.16823 -10.75185 -10.63992 -10.49228 -9.59929 -9.33457 -8.12690 -6.28686 -1.25210 -0.40686 0.27613 0.75833 0.83345 1.44830 1.47445 1.57355 1.68436 1.90763 2.25400 2.47263 3.16313 3.21911 3.60885 3.78655 4.13003 4.27569 4.37143 4.51757 4.69201 4.70632 4.82517 4.92253 4.95025 5.05031 5.44639 5.52440 5.66432 5.83926 6.01428 6.14485 6.55783 6.77015 7.06694 7.42784 8.92025 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.003951 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.536340 B = 7084.601334 C = 7919.782168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.297 6.297 3 C 0.325 3.675 4 N -0.535 5.535 5 S 0.408 5.592 6 C -0.168 4.168 7 C 0.565 3.435 8 O -0.543 6.543 9 N -0.581 5.581 10 C 0.060 3.940 11 C 0.265 3.735 12 H 0.020 0.980 13 C -0.136 4.136 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.020 3.980 17 N -0.915 5.915 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.137 4.137 23 Br 0.025 6.975 24 H 0.132 0.868 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.476 -7.345 -3.404 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.203 6.203 3 C 0.111 3.889 4 N -0.376 5.376 5 S 0.559 5.441 6 C -0.303 4.303 7 C 0.349 3.651 8 O -0.422 6.422 9 N -0.311 5.311 10 C -0.084 4.084 11 C 0.165 3.835 12 H 0.038 0.962 13 C -0.195 4.195 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.554 5.554 18 Si 0.788 3.212 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.238 4.238 23 Br 0.108 6.892 24 H 0.150 0.850 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.821 -6.956 -3.340 20.342 hybrid contribution 1.101 -0.567 0.699 1.422 sum -17.721 -7.524 -2.641 19.432 Atomic orbital electron populations 1.23303 0.74562 1.05747 1.02816 1.86377 1.24974 1.21313 1.87592 1.19120 0.87828 0.86600 0.95320 1.76333 1.28326 1.02136 1.30830 1.85087 0.85407 1.08123 1.65441 1.26088 1.00981 0.97443 1.05779 1.16984 0.85552 0.83482 0.79058 1.90847 1.47575 1.52851 1.50943 1.48127 1.11099 1.05515 1.66387 1.22146 0.89600 0.94474 1.02215 1.18715 0.76195 0.94026 0.94608 0.96215 1.21924 1.03314 0.98903 0.95315 1.21577 0.95094 1.24301 1.16653 0.91610 1.25662 0.95193 0.98493 0.98700 1.70022 0.99870 1.44188 1.41289 0.85443 0.78316 0.78622 0.78859 1.18713 1.21482 1.20149 1.21396 0.92935 0.94559 1.14897 1.96741 1.63463 1.31831 1.97118 0.84964 0.91894 0.91678 0.90502 0.87762 0.90067 0.95883 0.92803 0.91050 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.43 113.37 1.18 1.64 16 2 O -0.30 -7.18 10.09 -93.34 -0.94 -8.12 16 3 C 0.33 9.01 7.36 84.78 0.62 9.63 16 4 N -0.53 -13.66 11.02 -175.16 -1.93 -15.59 16 5 S 0.41 9.89 19.26 -56.49 -1.09 8.80 16 6 C -0.17 -5.54 6.38 24.55 0.16 -5.39 16 7 C 0.56 23.16 7.64 86.55 0.66 23.82 16 8 O -0.54 -26.26 14.50 -4.18 -0.06 -26.32 16 9 N -0.58 -23.31 2.75 -831.17 -2.29 -25.60 16 10 C 0.06 1.74 8.13 127.77 1.04 2.78 16 11 C 0.27 12.99 2.62 44.24 0.12 13.11 16 12 H 0.02 1.16 6.91 -2.39 -0.02 1.15 16 13 C -0.14 -6.14 8.95 71.98 0.64 -5.50 16 14 C -0.54 -27.46 8.37 25.60 0.21 -27.25 16 15 H 0.07 3.23 7.66 -2.91 -0.02 3.21 16 16 C 0.02 1.02 5.30 84.65 0.45 1.47 16 17 N -0.91 -50.57 11.32 21.45 0.24 -50.33 16 18 Si 0.96 41.26 29.54 68.60 2.03 43.28 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 22 C -0.14 -4.37 6.30 22.11 0.14 -4.23 16 23 Br 0.02 0.81 31.69 -20.37 -0.65 0.17 16 24 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 26 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 27 H 0.08 2.01 7.65 -2.39 -0.02 1.99 16 28 H 0.10 2.92 6.42 -2.39 -0.02 2.90 16 29 H 0.08 1.89 5.21 -15.54 -0.08 1.81 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 2.14 6.65 -2.39 -0.02 2.13 16 32 H 0.07 3.62 6.07 -2.38 -0.01 3.61 16 33 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -64.02 310.41 1.63 -62.39 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.09 Total: 1.24 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.23 Total: 10.08 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.98 Total: -91.52 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.00 Total: -34.44 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 9.89 SS G_CDS: -1.09 Total: 8.80 kcal Atomic # 35 Polarization: 0.81 SS G_CDS: -0.65 Total: 0.17 kcal Total: -64.02 1.63 -62.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443571560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.005 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds