Wall clock time and date at job start Wed Apr 1 2020 05:19:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35970 * 117.00246 * 2 1
4 4 N 1.30321 * 120.82944 * 0.02562 * 3 2 1
5 5 S 1.69667 * 107.66335 * 179.72789 * 4 3 2
6 6 C 1.77225 * 95.30377 * 0.02562 * 5 4 3
7 7 C 1.47030 * 127.75919 * 179.97438 * 6 5 4
8 8 O 1.21639 * 119.99660 * 171.66013 * 7 6 5
9 9 N 1.34773 * 119.99921 * 351.65832 * 7 6 5
10 10 C 1.46503 * 120.00147 * 1.36396 * 9 7 6
11 11 C 1.46498 * 119.99986 * 181.36129 * 9 7 6
12 12 H 1.09008 * 109.46944 * 0.02562 * 11 9 7
13 13 C 1.53000 * 109.47290 * 240.00314 * 11 9 7
14 14 C 1.50697 * 109.47423 * 120.00009 * 11 9 7
15 15 H 1.08010 * 119.99550 * 0.02562 * 14 11 9
16 16 C 1.37873 * 120.00604 * 180.02562 * 14 11 9
17 17 N 1.31510 * 119.99743 * 359.97438 * 16 14 11
18 18 Si 1.86802 * 120.00278 * 180.02562 * 16 14 11
19 19 H 1.48500 * 109.46783 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.47104 * 119.99731 * 18 16 14
21 21 H 1.48501 * 109.46971 * 239.99663 * 18 16 14
22 22 C 1.37676 * 120.83171 * 179.74340 * 3 2 1
23 23 Br 1.89101 * 122.89301 * 0.26548 * 22 3 2
24 24 H 1.09000 * 109.47295 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47406 * 300.00779 * 1 2 3
26 26 H 1.09009 * 109.46829 * 60.00354 * 1 2 3
27 27 H 1.08997 * 109.46815 * 83.62709 * 10 9 7
28 28 H 1.08997 * 109.47281 * 203.62321 * 10 9 7
29 29 H 1.08999 * 109.46822 * 323.62461 * 10 9 7
30 30 H 1.09004 * 109.47446 * 180.02562 * 13 11 9
31 31 H 1.08998 * 109.46877 * 299.99771 * 13 11 9
32 32 H 1.08998 * 109.47363 * 59.99884 * 13 11 9
33 33 H 0.97006 * 120.00477 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 7 1.3525 2.3146 0.0005
5 16 2.4469 3.6111 0.0080
6 6 3.9010 2.5980 0.0097
7 6 5.3042 3.0371 0.0151
8 8 6.1954 2.2236 0.1685
9 7 5.6029 4.3409 -0.1498
10 6 4.5285 5.3247 -0.3046
11 6 7.0021 4.7744 -0.1743
12 1 7.6528 3.9094 -0.0455
13 6 7.2472 5.7710 0.9604
14 6 7.3005 5.4344 -1.4958
15 1 6.5252 5.5226 -2.2426
16 6 8.5631 5.9258 -1.7515
17 7 9.5069 5.8189 -0.8420
18 14 8.9327 6.7445 -3.3894
19 1 7.7103 6.7391 -4.2324
20 1 9.3672 8.1452 -3.1557
21 1 10.0146 5.9996 -4.0821
22 6 3.4200 1.3034 0.0053
23 35 4.5507 -0.2123 0.0055
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3634 0.5140 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 4.1609 5.6190 0.6784
28 1 4.9112 6.2016 -0.8268
29 1 3.7140 4.8855 -0.8806
30 1 8.2881 6.0940 0.9419
31 1 6.5966 6.6359 0.8311
32 1 7.0314 5.2937 1.9162
33 1 10.3952 6.1649 -1.0217
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001443571561.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:07
Heat of formation + Delta-G solvation = -4.055832 kcal
Electronic energy + Delta-G solvation = -20445.532248 eV
Core-core repulsion = 17067.183984 eV
Total energy + Delta-G solvation = -3378.348264 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 347.993 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.28608 -39.24916 -36.64666 -35.48922 -33.12044 -32.15621 -30.29827 -29.06340
-28.12782 -26.56145 -25.33268 -24.67323 -22.19638 -20.24251 -18.89706 -18.25544
-17.66544 -16.62879 -16.44852 -15.87288 -15.63899 -14.89036 -14.70343 -14.57139
-13.62767 -13.59656 -13.19323 -12.73139 -12.71632 -12.29769 -12.08082 -11.76036
-11.62850 -11.30930 -11.14310 -11.02749 -10.92408 -10.80952 -10.58876 -10.36585
-10.26221 -9.97861 -9.38422 -9.34997 -9.17303 -8.52325 -8.38511 -7.81427
-6.16171 -4.25057 0.03303 0.79398 1.40530 2.00056 2.03198 2.82209
3.21931 3.30344 3.32361 3.43058 3.63695 4.32371 4.46206 4.88403
4.96963 5.00355 5.05319 5.16032 5.34546 5.35820 5.69589 5.88832
6.14105 6.63926 6.70280 6.81713 6.92049 7.18227 7.34370 7.60076
7.88167 8.03699 8.25024 8.58285 8.80633 9.41803 10.89225
Molecular weight = 347.99amu
Principal moments of inertia in cm(-1)
A = 0.018136 B = 0.003975 C = 0.003577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1543.491390 B = 7041.730392 C = 7825.157879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.289 6.289
3 C 0.327 3.673
4 N -0.543 5.543
5 S 0.339 5.661
6 C -0.139 4.139
7 C 0.567 3.433
8 O -0.500 6.500
9 N -0.573 5.573
10 C 0.068 3.932
11 C 0.260 3.740
12 H 0.070 0.930
13 C -0.148 4.148
14 C -0.531 4.531
15 H 0.062 0.938
16 C 0.068 3.932
17 N -0.885 5.885
18 Si 0.899 3.101
19 H -0.273 1.273
20 H -0.283 1.283
21 H -0.282 1.282
22 C -0.131 4.131
23 Br 0.034 6.966
24 H 0.102 0.898
25 H 0.060 0.940
26 H 0.060 0.940
27 H 0.058 0.942
28 H 0.106 0.894
29 H 0.054 0.946
30 H 0.097 0.903
31 H 0.032 0.968
32 H 0.014 0.986
33 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.210 -7.342 2.775 18.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.194 6.194
3 C 0.112 3.888
4 N -0.382 5.382
5 S 0.489 5.511
6 C -0.274 4.274
7 C 0.350 3.650
8 O -0.377 6.377
9 N -0.305 5.305
10 C -0.079 4.079
11 C 0.161 3.839
12 H 0.087 0.913
13 C -0.206 4.206
14 C -0.570 4.570
15 H 0.080 0.920
16 C -0.135 4.135
17 N -0.522 5.522
18 Si 0.727 3.273
19 H -0.197 1.197
20 H -0.209 1.209
21 H -0.208 1.208
22 C -0.231 4.231
23 Br 0.117 6.883
24 H 0.120 0.880
25 H 0.078 0.922
26 H 0.079 0.921
27 H 0.077 0.923
28 H 0.124 0.876
29 H 0.072 0.928
30 H 0.115 0.885
31 H 0.051 0.949
32 H 0.033 0.967
33 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -16.513 -6.974 2.896 18.157
hybrid contribution 0.514 -0.460 -0.933 1.160
sum -15.999 -7.434 1.963 17.751
Atomic orbital electron populations
1.22969 0.76769 1.03516 1.02516 1.86362 1.22824 1.22288 1.87957
1.19269 0.88367 0.85875 0.95267 1.76353 1.28725 1.02192 1.30942
1.85443 0.88274 1.09613 1.67735 1.26499 1.01331 0.96004 1.03546
1.16669 0.84365 0.83909 0.80043 1.90881 1.45808 1.51875 1.49091
1.48237 1.10212 1.04383 1.67653 1.21937 0.89503 0.95231 1.01252
1.19129 0.74101 0.95644 0.95075 0.91257 1.22112 1.04582 0.98423
0.95497 1.21312 0.96820 1.38899 0.99927 0.91968 1.24871 0.95867
0.95680 0.97124 1.69878 1.03020 1.45715 1.33613 0.86420 0.78486
0.78972 0.83421 1.19734 1.20865 1.20834 1.21239 0.92160 0.94899
1.14779 1.96766 1.62894 1.31478 1.97137 0.88003 0.92162 0.92127
0.92329 0.87602 0.92828 0.88484 0.94917 0.96701 0.92565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.34 10.43 101.05 1.05 1.40 16
2 O -0.29 -3.81 10.09 -19.65 -0.20 -4.00 16
3 C 0.33 4.87 7.36 -18.40 -0.14 4.74 16
4 N -0.54 -7.71 11.02 29.21 0.32 -7.39 16
5 S 0.34 4.56 19.22 -107.50 -2.07 2.49 16
6 C -0.14 -2.36 6.44 -36.07 -0.23 -2.59 16
7 C 0.57 11.55 7.65 -12.70 -0.10 11.46 16
8 O -0.50 -11.68 14.49 5.24 0.08 -11.60 16
9 N -0.57 -11.59 2.75 -176.68 -0.49 -12.07 16
10 C 0.07 1.05 7.97 59.85 0.48 1.53 16
11 C 0.26 6.23 2.63 -69.09 -0.18 6.04 16
12 H 0.07 1.93 6.90 -51.92 -0.36 1.57 16
13 C -0.15 -3.30 8.97 37.16 0.33 -2.97 16
14 C -0.53 -13.53 7.95 -34.44 -0.27 -13.80 16
15 H 0.06 1.56 7.44 -52.48 -0.39 1.17 16
16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16
17 N -0.88 -23.94 11.32 55.43 0.63 -23.31 16
18 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16
19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
22 C -0.13 -2.17 6.30 -39.83 -0.25 -2.42 16
23 Br 0.03 0.55 31.69 -68.01 -2.16 -1.60 16
24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16
26 H 0.06 0.54 8.13 -51.92 -0.42 0.12 16
27 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16
28 H 0.11 1.69 7.12 -51.93 -0.37 1.32 16
29 H 0.05 0.74 4.58 -24.81 -0.11 0.63 16
30 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16
31 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16
32 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16
33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16
LS Contribution 311.04 15.07 4.69 4.69
Total: -1.00 -29.12 311.04 -6.80 -35.92
By element:
Atomic # 1 Polarization: -0.17 SS G_CDS: -3.18 Total: -3.35 kcal
Atomic # 6 Polarization: 4.44 SS G_CDS: 0.60 Total: 5.04 kcal
Atomic # 7 Polarization: -43.24 SS G_CDS: 0.46 Total: -42.77 kcal
Atomic # 8 Polarization: -15.49 SS G_CDS: -0.12 Total: -15.61 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal
Atomic # 16 Polarization: 4.56 SS G_CDS: -2.07 Total: 2.49 kcal
Atomic # 35 Polarization: 0.55 SS G_CDS: -2.16 Total: -1.60 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -29.12 -6.80 -35.92 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001443571561.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.864 kcal
(2) G-P(sol) polarization free energy of solvation -29.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds