Wall clock time and date at job start Wed Apr 1 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99219 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99930 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99833 * 3 2 1 7 7 C 1.38955 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46507 * 109.47005 * 180.02562 * 12 10 9 14 14 C 1.35792 * 119.61872 * 269.72764 * 13 12 10 15 15 C 1.35335 * 120.70701 * 179.76217 * 14 13 12 16 16 C 1.40204 * 119.95740 * 0.50239 * 15 14 13 17 17 C 1.36431 * 119.26130 * 359.75445 * 16 15 14 18 18 I 2.09497 * 120.34978 * 180.02562 * 17 16 15 19 19 C 1.34655 * 119.62475 * 89.99431 * 13 12 10 20 20 O 1.22055 * 119.99435 * 0.02562 * 19 13 12 21 21 H 0.96990 * 120.00373 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 24 24 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 25 25 H 1.07999 * 119.64670 * 359.97438 * 14 13 12 26 26 H 1.07995 * 120.02115 * 180.27726 * 15 14 13 27 27 H 1.08004 * 120.36631 * 179.72958 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0067 13 7 2.1958 -5.9766 0.0061 14 6 2.6232 -6.4934 -1.1747 15 6 3.5060 -7.5189 -1.2010 16 6 3.9804 -8.0653 -0.0002 17 6 3.5460 -7.5483 1.1853 18 53 4.2334 -8.3381 2.9999 19 6 2.6328 -6.4794 1.1763 20 8 2.2353 -6.0077 2.2295 21 1 -0.4850 0.8399 -0.0004 22 1 0.3533 -2.3907 0.0005 23 1 0.6209 -4.9186 0.8995 24 1 0.6134 -4.9228 -0.8804 25 1 2.2575 -6.0794 -2.1027 26 1 3.8419 -7.9184 -2.1464 27 1 4.6817 -8.8866 -0.0135 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459148356.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:54 Heat of formation + Delta-G solvation = -16.998969 kcal Electronic energy + Delta-G solvation = -16201.487086 eV Core-core repulsion = 13205.541132 eV Total energy + Delta-G solvation = -2995.945954 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 347.976 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29964 -38.18747 -36.75631 -34.86826 -33.97246 -31.45202 -30.92118 -28.31366 -27.87490 -24.92925 -23.10184 -22.67118 -19.70894 -18.17741 -17.36102 -17.07946 -16.60537 -15.93579 -15.03956 -14.56128 -14.41063 -14.11947 -13.86104 -13.63870 -12.70100 -12.46600 -11.88421 -11.79329 -11.64434 -11.45457 -11.12224 -10.86217 -10.47313 -10.33944 -9.84392 -9.67046 -9.65633 -9.61017 -8.64100 -8.13049 -7.84105 -6.54545 -3.96085 0.72974 1.24457 1.95336 2.78589 3.09505 3.20846 3.27215 3.63489 3.68793 4.08726 4.59194 4.63277 4.78582 4.93048 5.10968 5.18127 5.33395 5.59144 5.70857 5.91202 5.99213 6.10155 6.50037 7.12181 7.43765 7.87912 8.15566 8.42167 9.02420 9.33966 9.83059 10.62332 Molecular weight = 347.98amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.003345 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.695571 B = 8369.604344 C = 8895.817940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.549 5.549 10 C 0.423 3.577 11 O -0.584 6.584 12 C 0.076 3.924 13 N -0.464 5.464 14 C 0.178 3.822 15 C -0.252 4.252 16 C 0.031 3.969 17 C -0.239 4.239 18 I -0.013 7.013 19 C 0.533 3.467 20 O -0.527 6.527 21 H 0.274 0.726 22 H 0.394 0.606 23 H 0.118 0.882 24 H 0.109 0.891 25 H 0.166 0.834 26 H 0.151 0.849 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -19.877 -1.226 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.207 3.793 11 O -0.469 6.469 12 C -0.050 4.050 13 N -0.171 5.171 14 C 0.047 3.953 15 C -0.277 4.277 16 C 0.006 3.994 17 C -0.383 4.383 18 I 0.134 6.866 19 C 0.331 3.669 20 O -0.407 6.407 21 H 0.084 0.916 22 H 0.228 0.772 23 H 0.136 0.864 24 H 0.127 0.873 25 H 0.183 0.817 26 H 0.168 0.832 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.917 -19.870 0.758 20.483 hybrid contribution -0.578 1.418 -1.261 1.984 sum 4.339 -18.451 -0.503 18.961 Atomic orbital electron populations 1.69600 1.05991 1.28552 1.49470 1.25309 0.95682 0.99901 0.96759 0.85814 0.79339 0.80449 0.78472 1.20246 1.20722 1.19282 1.19716 0.93440 0.81910 1.48100 0.87776 1.41768 1.09306 1.04371 1.62968 1.19766 0.88532 0.84749 0.86250 1.90578 1.13429 1.86680 1.56221 1.21861 0.91342 0.85698 1.06058 1.45011 1.37473 1.28160 1.06494 1.22134 0.91927 0.91406 0.89804 1.20544 1.05420 1.02761 0.98971 1.21363 0.92390 0.94742 0.90931 1.25292 1.10005 1.05533 0.97500 1.96551 1.86054 1.80842 1.23111 1.16426 0.82986 0.84101 0.83348 1.90999 1.58788 1.61943 1.28945 0.91585 0.77194 0.86403 0.87259 0.81714 0.83183 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -23.00 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 15 3 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 15 4 H -0.28 -6.02 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 15 8 H 0.10 3.02 7.16 -52.48 -0.38 2.65 15 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 15 10 C 0.42 9.73 7.85 -10.98 -0.09 9.65 15 11 O -0.58 -15.79 16.01 5.55 0.09 -15.71 15 12 C 0.08 1.28 5.82 -5.19 -0.03 1.25 15 13 N -0.46 -7.64 2.07 -121.04 -0.25 -7.89 15 14 C 0.18 2.18 10.28 -16.83 -0.17 2.01 15 15 C -0.25 -2.64 10.01 -39.88 -0.40 -3.04 15 16 C 0.03 0.37 9.81 -39.50 -0.39 -0.02 15 17 C -0.24 -3.73 6.22 -39.35 -0.24 -3.98 15 18 I -0.01 -0.18 39.71 -73.02 -2.90 -3.08 15 19 C 0.53 9.99 7.40 -15.43 -0.11 9.88 15 20 O -0.53 -11.70 15.90 4.87 0.08 -11.62 15 21 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.39 9.11 7.90 -40.82 -0.32 8.79 15 23 H 0.12 2.00 7.39 -51.93 -0.38 1.62 15 24 H 0.11 1.33 8.01 -51.93 -0.42 0.92 15 25 H 0.17 1.44 8.03 -52.49 -0.42 1.02 15 26 H 0.15 1.02 8.06 -52.49 -0.42 0.60 15 27 H 0.14 1.22 8.06 -52.48 -0.42 0.80 15 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -34.38 278.38 -6.72 -41.10 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -1.90 Total: 5.93 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -1.68 Total: 7.91 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.42 Total: -44.44 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 0.17 Total: -27.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 53 Polarization: -0.18 SS G_CDS: -2.90 Total: -3.08 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.38 -6.72 -41.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459148356.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.098 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds