Wall clock time and date at job start Wed Apr 1 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99219 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99930 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99833 * 3 2 1 7 7 C 1.38955 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46507 * 109.47005 * 180.02562 * 12 10 9 14 14 C 1.35792 * 119.61872 * 269.72764 * 13 12 10 15 15 C 1.35335 * 120.70701 * 179.76217 * 14 13 12 16 16 C 1.40204 * 119.95740 * 0.50239 * 15 14 13 17 17 C 1.36431 * 119.26130 * 359.75445 * 16 15 14 18 18 I 2.09497 * 120.34978 * 180.02562 * 17 16 15 19 19 C 1.34655 * 119.62475 * 89.99431 * 13 12 10 20 20 O 1.22055 * 119.99435 * 0.02562 * 19 13 12 21 21 H 0.96990 * 120.00373 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 24 24 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 25 25 H 1.07999 * 119.64670 * 359.97438 * 14 13 12 26 26 H 1.07995 * 120.02115 * 180.27726 * 15 14 13 27 27 H 1.08004 * 120.36631 * 179.72958 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0067 13 7 2.1958 -5.9766 0.0061 14 6 2.6232 -6.4934 -1.1747 15 6 3.5060 -7.5189 -1.2010 16 6 3.9804 -8.0653 -0.0002 17 6 3.5460 -7.5483 1.1853 18 53 4.2334 -8.3381 2.9999 19 6 2.6328 -6.4794 1.1763 20 8 2.2353 -6.0077 2.2295 21 1 -0.4850 0.8399 -0.0004 22 1 0.3533 -2.3907 0.0005 23 1 0.6209 -4.9186 0.8995 24 1 0.6134 -4.9228 -0.8804 25 1 2.2575 -6.0794 -2.1027 26 1 3.8419 -7.9184 -2.1464 27 1 4.6817 -8.8866 -0.0135 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459148356.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:54 Heat of formation + Delta-G solvation = -41.124017 kcal Electronic energy + Delta-G solvation = -16202.533226 eV Core-core repulsion = 13205.541132 eV Total energy + Delta-G solvation = -2996.992094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 347.976 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.51343 -40.00716 -38.02611 -36.29814 -35.70558 -33.41330 -32.04162 -29.74897 -28.94777 -26.78024 -24.28753 -23.83884 -21.44535 -20.11282 -18.49790 -18.30627 -18.23004 -17.15613 -16.76289 -16.12197 -15.82935 -15.79036 -15.37806 -14.74798 -14.46413 -13.62950 -13.53941 -13.24012 -12.99698 -12.89779 -12.50481 -12.49644 -12.17488 -12.00919 -11.59858 -11.14707 -10.83337 -10.76876 -10.37278 -10.11987 -8.99639 -8.54243 -6.03985 -0.29956 0.17532 0.88144 1.32730 1.39079 1.50527 1.61744 1.87586 2.25102 2.51527 3.09398 3.13038 3.59754 3.77151 3.96345 4.06328 4.23756 4.27958 4.32591 4.71348 4.97575 5.12661 5.34201 5.53759 5.88046 5.97307 6.46215 6.88910 7.02265 7.40430 7.94420 8.62222 Molecular weight = 347.98amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.003345 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.695571 B = 8369.604344 C = 8895.817940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.278 1.278 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.558 5.558 10 C 0.423 3.577 11 O -0.628 6.628 12 C 0.088 3.912 13 N -0.473 5.473 14 C 0.160 3.840 15 C -0.232 4.232 16 C 0.050 3.950 17 C -0.278 4.278 18 I -0.013 7.013 19 C 0.513 3.487 20 O -0.585 6.585 21 H 0.281 0.719 22 H 0.400 0.600 23 H 0.114 0.886 24 H 0.164 0.836 25 H 0.204 0.796 26 H 0.200 0.800 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -20.848 -3.413 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.203 1.203 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.194 5.194 10 C 0.210 3.790 11 O -0.516 6.516 12 C -0.037 4.037 13 N -0.180 5.180 14 C 0.031 3.969 15 C -0.255 4.255 16 C 0.025 3.975 17 C -0.421 4.421 18 I 0.134 6.866 19 C 0.315 3.685 20 O -0.471 6.471 21 H 0.090 0.910 22 H 0.235 0.765 23 H 0.132 0.868 24 H 0.182 0.818 25 H 0.221 0.779 26 H 0.217 0.783 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.057 -20.872 -1.482 21.527 hybrid contribution -0.581 1.616 -0.675 1.845 sum 4.476 -19.256 -2.157 19.887 Atomic orbital electron populations 1.69647 1.06747 1.29638 1.49240 1.26041 0.96567 1.02389 0.95796 0.84942 0.77743 0.76801 0.78951 1.18940 1.19454 1.20262 1.19620 0.92638 0.83808 1.50548 0.90487 1.41806 1.09510 1.04425 1.63687 1.20801 0.88326 0.86259 0.83629 1.90540 1.15731 1.87775 1.57509 1.21782 0.90959 0.82540 1.08453 1.45066 1.37643 1.27860 1.07411 1.22985 0.92371 0.91946 0.89575 1.21208 1.03087 1.00983 1.00263 1.21876 0.91190 0.94366 0.90106 1.25325 1.11378 1.06326 0.99065 1.96485 1.85698 1.80214 1.24183 1.16984 0.83385 0.84798 0.83364 1.90948 1.61195 1.64093 1.30842 0.90989 0.76520 0.86835 0.81813 0.77942 0.78347 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.06 13.05 21.66 0.28 -47.78 15 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 15 3 Si 0.99 42.42 29.55 68.60 2.03 44.45 15 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 7 C -0.34 -18.89 9.68 84.04 0.81 -18.08 15 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 15 9 N -0.56 -27.90 5.29 -306.97 -1.62 -29.52 15 10 C 0.42 19.65 7.85 87.65 0.69 20.34 15 11 O -0.63 -34.66 16.01 -3.06 -0.05 -34.71 15 12 C 0.09 2.88 5.82 85.63 0.50 3.38 15 13 N -0.47 -14.90 2.07 -655.00 -1.36 -16.25 15 14 C 0.16 3.34 10.28 83.41 0.86 4.20 15 15 C -0.23 -3.79 10.01 22.08 0.22 -3.57 15 16 C 0.05 1.02 9.81 22.33 0.22 1.24 15 17 C -0.28 -8.39 6.22 22.42 0.14 -8.25 15 18 I -0.01 -0.36 39.71 -18.82 -0.75 -1.11 15 19 C 0.51 19.27 7.40 84.83 0.63 19.90 15 20 O -0.59 -27.00 15.90 -5.49 -0.09 -27.09 15 21 H 0.28 13.80 8.31 -92.72 -0.77 13.03 15 22 H 0.40 18.67 7.90 -92.70 -0.73 17.93 15 23 H 0.11 3.87 7.39 -2.39 -0.02 3.85 15 24 H 0.16 3.47 8.01 -2.39 -0.02 3.45 15 25 H 0.20 2.55 8.03 -2.91 -0.02 2.53 15 26 H 0.20 1.36 8.06 -2.91 -0.02 1.33 15 27 H 0.17 2.32 8.06 -2.91 -0.02 2.30 15 Total: -1.00 -78.90 278.38 3.47 -75.43 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.49 Total: 17.31 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 4.53 Total: 19.26 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.70 Total: -93.55 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -0.14 Total: -61.80 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 53 Polarization: -0.36 SS G_CDS: -0.75 Total: -1.11 kcal Total: -78.90 3.47 -75.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459148356.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.310 kcal (2) G-P(sol) polarization free energy of solvation -78.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds