Wall clock time and date at job start Wed Apr 1 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.46876 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 O 1.42903 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.35925 * 116.99722 * 179.97438 * 14 13 11 16 16 C 1.38691 * 120.05546 * 359.97438 * 15 14 13 17 17 C 1.38261 * 119.94672 * 179.97438 * 16 15 14 18 18 Cl 1.73607 * 119.97243 * 180.02562 * 17 16 15 19 19 C 1.38389 * 120.05285 * 0.02562 * 17 16 15 20 20 N 1.48018 * 119.95145 * 179.97438 * 19 17 16 21 21 O 1.21799 * 120.00155 * 179.97438 * 20 19 17 22 22 O 1.21800 * 119.99601 * 359.97438 * 20 19 17 23 23 C 1.38237 * 120.10268 * 359.97438 * 19 17 16 24 24 C 1.38264 * 120.05513 * 359.74918 * 23 19 17 25 25 Cl 1.73595 * 120.02514 * 180.27185 * 24 23 19 26 26 H 0.97009 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 28 28 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 29 29 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 30 30 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 31 31 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 32 32 H 1.08003 * 120.02582 * 359.95387 * 16 15 14 33 33 H 1.07995 * 119.96957 * 180.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0022 11 6 5.3248 -2.8216 -0.0024 12 8 6.1130 -1.8998 -0.0021 13 6 5.8271 -4.2424 -0.0041 14 8 7.2562 -4.2424 -0.0046 15 6 7.8732 -5.4535 -0.0055 16 6 7.1189 -6.6174 -0.0056 17 6 7.7489 -7.8481 -0.0071 18 17 6.8054 -9.3055 -0.0078 19 6 9.1310 -7.9193 -0.0081 20 7 9.8031 -9.2381 -0.0092 21 8 11.0194 -9.3017 -0.0105 22 8 9.1398 -10.2596 -0.0087 23 6 9.8849 -6.7606 -0.0081 24 6 9.2594 -5.5275 -0.0123 25 17 10.2069 -4.0729 -0.0195 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8911 29 1 3.3694 -3.3126 -0.0021 30 1 5.4637 -4.7574 0.8852 31 1 5.4639 -4.7552 -0.8948 32 1 6.0403 -6.5624 -0.0040 33 1 10.9633 -6.8186 -0.0093 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459285334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:08 Heat of formation + Delta-G solvation = -47.859401 kcal Electronic energy + Delta-G solvation = -24426.683545 eV Core-core repulsion = 20122.986700 eV Total energy + Delta-G solvation = -4303.696844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.57424 -41.21009 -39.41429 -38.22103 -37.49049 -36.92624 -36.75867 -34.59890 -32.59166 -32.02457 -31.78380 -29.72118 -27.60285 -26.39948 -24.14662 -23.06317 -22.21075 -20.41281 -19.99726 -19.12130 -19.08006 -17.94202 -17.89604 -17.00873 -16.96486 -16.40336 -16.04127 -15.60611 -15.08471 -15.00547 -14.85584 -14.36649 -14.08673 -13.76740 -13.18162 -13.13976 -12.56317 -12.55084 -12.49256 -12.44374 -11.84729 -11.79022 -11.61300 -11.48692 -11.41156 -11.18812 -10.90789 -10.90038 -10.11045 -9.94845 -9.69397 -9.60039 -9.30527 -8.94179 -8.46648 -6.35042 -4.39206 -0.73049 -0.12099 0.76948 0.78506 1.05060 1.49690 2.01688 2.30148 2.74391 3.16823 3.24302 3.30949 3.41351 3.59807 3.70983 3.96548 4.20700 4.24327 4.46094 4.53558 4.58648 4.64584 4.71870 4.91698 5.00198 5.17255 5.92164 6.22363 6.57875 6.85932 6.88353 7.17127 7.27737 7.86147 8.24345 8.47118 8.63965 9.23355 10.76494 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002326 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.093888 B =12035.989927 C =13559.627704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.696 5.696 11 C 0.503 3.497 12 O -0.528 6.528 13 C 0.027 3.973 14 O -0.253 6.253 15 C 0.213 3.787 16 C -0.200 4.200 17 C 0.063 3.937 18 Cl 0.009 6.991 19 C -0.078 4.078 20 N 0.036 4.964 21 O -0.163 6.163 22 O -0.138 6.138 23 C 0.004 3.996 24 C -0.075 4.075 25 Cl -0.008 7.008 26 H 0.269 0.731 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.399 0.601 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.956 -17.194 0.004 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.346 5.346 11 C 0.285 3.715 12 O -0.405 6.405 13 C -0.051 4.051 14 O -0.162 6.162 15 C 0.162 3.838 16 C -0.220 4.220 17 C 0.034 3.966 18 Cl 0.039 6.961 19 C -0.163 4.163 20 N 0.555 4.445 21 O -0.375 6.375 22 O -0.357 6.357 23 C -0.016 4.016 24 C -0.104 4.104 25 Cl 0.021 6.979 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.233 0.767 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.190 0.810 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.096 -15.504 0.006 23.080 hybrid contribution -0.106 0.052 -0.019 0.120 sum 16.990 -15.453 -0.013 22.966 Atomic orbital electron populations 1.69868 1.06223 1.27644 1.48766 1.24784 0.94806 0.99207 0.93687 0.86829 0.80561 0.83218 0.79169 1.19737 1.20744 1.18482 1.21022 0.88187 0.95350 1.54124 0.90111 1.19592 0.95487 0.77606 0.97214 1.46065 1.04562 1.11773 1.72246 1.19662 0.83931 0.88841 0.79043 1.90752 1.55190 1.45281 1.49263 1.23006 0.77967 0.99472 1.04699 1.86381 1.21438 1.23436 1.84949 1.18913 0.90681 0.85498 0.88722 1.21210 1.02331 0.88583 1.09920 1.20502 0.89485 0.91062 0.95592 1.98500 1.70574 1.31816 1.95243 1.20463 0.90957 0.84571 1.20348 1.43185 1.01094 1.02138 0.98051 1.94561 0.95379 1.93551 1.54051 1.94629 1.65183 1.23443 1.52466 1.20630 1.02385 0.87197 0.91358 1.19926 0.89178 0.90006 1.11247 1.98458 1.70280 1.32498 1.96645 0.92068 0.95301 0.95761 0.76682 0.87924 0.87924 0.80978 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 13.96 55.43 0.77 -24.39 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.55 -13.96 9.83 -34.44 -0.34 -14.30 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 C 0.22 4.97 4.50 -5.19 -0.02 4.95 16 10 N -0.70 -11.93 5.55 -61.47 -0.34 -12.27 16 11 C 0.50 8.04 7.91 -10.98 -0.09 7.96 16 12 O -0.53 -10.94 16.50 -14.35 -0.24 -11.17 16 13 C 0.03 0.26 5.22 36.01 0.19 0.45 16 14 O -0.25 -2.91 9.13 -39.42 -0.36 -3.27 16 15 C 0.21 1.94 6.68 -39.20 -0.26 1.68 16 16 C -0.20 -1.46 8.82 -39.41 -0.35 -1.81 16 17 C 0.06 0.52 6.32 -39.52 -0.25 0.27 16 18 Cl 0.01 0.07 25.93 -51.86 -1.34 -1.27 16 19 C -0.08 -0.72 6.86 -79.89 -0.55 -1.26 16 20 N 0.04 0.39 4.45 33.99 0.15 0.54 16 21 O -0.16 -1.85 18.44 -29.46 -0.54 -2.39 16 22 O -0.14 -1.60 16.01 -29.46 -0.47 -2.07 16 23 C 0.00 0.03 9.33 -39.57 -0.37 -0.34 16 24 C -0.07 -0.67 6.33 -39.36 -0.25 -0.92 16 25 Cl -0.01 -0.08 28.50 -51.86 -1.48 -1.56 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 28 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 29 H 0.40 5.62 8.32 -40.82 -0.34 5.28 16 30 H 0.10 0.69 7.66 -51.93 -0.40 0.29 16 31 H 0.10 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.17 0.82 6.30 -52.48 -0.33 0.48 16 33 H 0.18 1.11 7.60 -52.49 -0.40 0.71 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -31.81 332.43 -8.10 -39.92 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -2.21 Total: -1.43 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.38 Total: -1.29 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.58 Total: -36.12 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.61 Total: -18.91 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -2.82 Total: -2.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.81 -8.10 -39.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459285334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.942 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds