Wall clock time and date at job start Wed Apr 1 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.46876 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 O 1.42903 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.35925 * 116.99722 * 179.97438 * 14 13 11 16 16 C 1.38691 * 120.05546 * 359.97438 * 15 14 13 17 17 C 1.38261 * 119.94672 * 179.97438 * 16 15 14 18 18 Cl 1.73607 * 119.97243 * 180.02562 * 17 16 15 19 19 C 1.38389 * 120.05285 * 0.02562 * 17 16 15 20 20 N 1.48018 * 119.95145 * 179.97438 * 19 17 16 21 21 O 1.21799 * 120.00155 * 179.97438 * 20 19 17 22 22 O 1.21800 * 119.99601 * 359.97438 * 20 19 17 23 23 C 1.38237 * 120.10268 * 359.97438 * 19 17 16 24 24 C 1.38264 * 120.05513 * 359.74918 * 23 19 17 25 25 Cl 1.73595 * 120.02514 * 180.27185 * 24 23 19 26 26 H 0.97009 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 28 28 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 29 29 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 30 30 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 31 31 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 32 32 H 1.08003 * 120.02582 * 359.95387 * 16 15 14 33 33 H 1.07995 * 119.96957 * 180.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0022 11 6 5.3248 -2.8216 -0.0024 12 8 6.1130 -1.8998 -0.0021 13 6 5.8271 -4.2424 -0.0041 14 8 7.2562 -4.2424 -0.0046 15 6 7.8732 -5.4535 -0.0055 16 6 7.1189 -6.6174 -0.0056 17 6 7.7489 -7.8481 -0.0071 18 17 6.8054 -9.3055 -0.0078 19 6 9.1310 -7.9193 -0.0081 20 7 9.8031 -9.2381 -0.0092 21 8 11.0194 -9.3017 -0.0105 22 8 9.1398 -10.2596 -0.0087 23 6 9.8849 -6.7606 -0.0081 24 6 9.2594 -5.5275 -0.0123 25 17 10.2069 -4.0729 -0.0195 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8911 29 1 3.3694 -3.3126 -0.0021 30 1 5.4637 -4.7574 0.8852 31 1 5.4639 -4.7552 -0.8948 32 1 6.0403 -6.5624 -0.0040 33 1 10.9633 -6.8186 -0.0093 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459285334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:08 Heat of formation + Delta-G solvation = -67.884879 kcal Electronic energy + Delta-G solvation = -24427.551914 eV Core-core repulsion = 20122.986700 eV Total energy + Delta-G solvation = -4304.565214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.36158 -41.98015 -40.57051 -39.11084 -38.19346 -37.70556 -37.48910 -36.22476 -34.46659 -32.73622 -32.48523 -30.99161 -28.98262 -27.24227 -24.96101 -24.08554 -23.57939 -21.74763 -20.74098 -19.95993 -19.84702 -19.30036 -18.73348 -18.23696 -17.76794 -17.44401 -17.03925 -16.89056 -16.16101 -16.12162 -15.74043 -15.52319 -15.03814 -14.95393 -14.48897 -14.19192 -14.14467 -13.79591 -13.30250 -13.22035 -13.06157 -12.77382 -12.61903 -12.61825 -12.36241 -12.22252 -12.21573 -11.95163 -11.66127 -11.63888 -10.98924 -10.92517 -10.57082 -10.05986 -9.99160 -8.40205 -6.47116 -1.48422 -0.74512 0.00928 0.03613 0.39751 0.78935 1.20430 1.32723 1.37072 1.46708 1.52940 1.64404 2.27328 2.48405 2.84361 2.95843 3.03882 3.28948 3.49194 3.74133 3.80904 3.94235 3.98779 4.07455 4.08945 4.56820 4.76360 5.01080 5.11139 5.24193 5.39893 5.54392 6.06378 6.41494 6.53912 6.72361 7.13224 7.29880 8.74027 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002326 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.093888 B =12035.989927 C =13559.627704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.232 3.768 10 N -0.694 5.694 11 C 0.502 3.498 12 O -0.580 6.580 13 C 0.034 3.966 14 O -0.279 6.279 15 C 0.212 3.788 16 C -0.183 4.183 17 C 0.061 3.939 18 Cl 0.011 6.989 19 C -0.085 4.085 20 N 0.036 4.964 21 O -0.176 6.176 22 O -0.152 6.152 23 C 0.014 3.986 24 C -0.081 4.081 25 Cl -0.021 7.021 26 H 0.272 0.728 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.416 0.584 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.205 0.795 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.384 -18.150 -0.025 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.108 3.892 10 N -0.346 5.346 11 C 0.287 3.713 12 O -0.460 6.460 13 C -0.043 4.043 14 O -0.189 6.189 15 C 0.162 3.838 16 C -0.202 4.202 17 C 0.032 3.968 18 Cl 0.041 6.959 19 C -0.170 4.170 20 N 0.552 4.448 21 O -0.387 6.387 22 O -0.370 6.370 23 C -0.005 4.005 24 C -0.109 4.109 25 Cl 0.008 6.992 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.252 0.748 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.221 0.779 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 17.531 -16.526 -0.024 24.092 hybrid contribution -0.237 0.280 -0.009 0.366 sum 17.294 -16.247 -0.033 23.728 Atomic orbital electron populations 1.69971 1.07656 1.28562 1.50660 1.25555 0.95463 1.02536 0.93758 0.85933 0.79349 0.79701 0.79366 1.19158 1.20198 1.18314 1.21271 0.89804 0.94674 1.52487 0.91635 1.19140 0.93405 0.80610 0.96018 1.45800 1.05910 1.10213 1.72689 1.20597 0.82661 0.91198 0.76812 1.90733 1.56257 1.47785 1.51236 1.23041 0.77597 0.94958 1.08696 1.86331 1.22191 1.24819 1.85537 1.18932 0.90567 0.85270 0.89064 1.21434 1.03594 0.87140 1.08064 1.20605 0.89151 0.91557 0.95503 1.98508 1.70378 1.31884 1.95176 1.20548 0.91411 0.83750 1.21308 1.43401 1.01034 1.02685 0.97653 1.94553 0.95823 1.93839 1.54474 1.94620 1.65088 1.24250 1.52999 1.20697 1.03043 0.86477 0.90317 1.19984 0.89331 0.89703 1.11922 1.98457 1.70680 1.33309 1.96763 0.91899 0.96688 0.96804 0.74759 0.83797 0.83790 0.77854 0.79176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.02 13.96 21.45 0.30 -52.72 16 2 C 0.03 1.47 5.47 84.66 0.46 1.93 16 3 Si 0.93 41.80 27.47 68.60 1.88 43.69 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -11.44 6.54 99.48 0.65 -10.79 16 7 C -0.54 -27.57 9.83 25.60 0.25 -27.32 16 8 H 0.07 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 10.20 4.50 85.63 0.38 10.59 16 10 N -0.69 -22.52 5.55 -466.78 -2.59 -25.11 16 11 C 0.50 14.94 7.91 87.66 0.69 15.63 16 12 O -0.58 -23.55 16.50 16.01 0.26 -23.28 16 13 C 0.03 0.53 5.22 71.24 0.37 0.90 16 14 O -0.28 -5.58 9.13 -73.67 -0.67 -6.26 16 15 C 0.21 3.22 6.68 22.52 0.15 3.37 16 16 C -0.18 -1.93 8.82 22.38 0.20 -1.74 16 17 C 0.06 0.84 6.32 22.31 0.14 0.98 16 18 Cl 0.01 0.15 25.93 -2.72 -0.07 0.08 16 19 C -0.08 -1.38 6.86 36.41 0.25 -1.13 16 20 N 0.04 0.74 4.45 -46.38 -0.21 0.53 16 21 O -0.18 -3.85 18.44 18.89 0.35 -3.50 16 22 O -0.15 -3.37 16.01 18.89 0.30 -3.07 16 23 C 0.01 0.20 9.33 22.28 0.21 0.41 16 24 C -0.08 -1.29 6.33 22.41 0.14 -1.15 16 25 Cl -0.02 -0.40 28.50 -2.72 -0.08 -0.48 16 26 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 27 H 0.02 0.71 7.20 -2.39 -0.02 0.70 16 28 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 29 H 0.42 10.64 8.32 -92.71 -0.77 9.87 16 30 H 0.14 1.13 7.66 -2.39 -0.02 1.11 16 31 H 0.14 1.12 7.67 -2.39 -0.02 1.11 16 32 H 0.20 0.78 6.30 -2.91 -0.02 0.76 16 33 H 0.19 2.10 7.60 -2.91 -0.02 2.08 16 Total: -1.00 -70.43 332.43 3.12 -67.30 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 0.39 Total: 0.34 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 3.25 Total: 2.47 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.50 Total: -77.30 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: 0.24 Total: -36.10 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.69 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.15 Total: -0.40 kcal Total: -70.43 3.12 -67.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459285334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.580 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds