Wall clock time and date at job start Wed Apr 1 2020 04:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46874 * 2 1 4 4 C 1.48566 * 111.00105 * 290.12548 * 3 2 1 5 5 C 1.54376 * 104.59661 * 200.96172 * 4 3 2 6 6 C 1.54257 * 105.06103 * 23.84914 * 5 4 3 7 7 H 1.08998 * 110.32676 * 241.00533 * 6 5 4 8 8 C 1.53003 * 110.32178 * 118.89788 * 6 5 4 9 9 N 1.46497 * 109.47216 * 66.45690 * 8 6 5 10 10 C 1.36738 * 127.13430 * 264.02568 * 9 8 6 11 11 C 1.50703 * 126.34884 * 359.97438 * 10 9 8 12 12 C 1.53000 * 117.50073 * 188.74871 * 11 10 9 13 13 C 1.53001 * 117.49549 * 120.09096 * 11 10 9 14 14 N 1.30294 * 107.30725 * 180.02562 * 10 9 8 15 15 N 1.28529 * 110.05151 * 359.72832 * 14 10 9 16 16 C 1.31218 * 109.86197 * 0.44879 * 15 14 10 17 17 N 1.38576 * 126.47652 * 179.82096 * 16 15 14 18 18 C 1.46893 * 111.00348 * 289.25383 * 17 16 15 19 19 C 1.46904 * 110.99470 * 53.20532 * 17 16 15 20 20 H 1.08990 * 109.47194 * 300.00034 * 19 17 16 21 21 C 1.53006 * 109.47168 * 60.00316 * 19 17 16 22 22 C 1.50706 * 109.46783 * 179.97438 * 19 17 16 23 23 H 1.07995 * 119.99989 * 0.02562 * 22 19 17 24 24 C 1.37875 * 119.99749 * 179.97438 * 22 19 17 25 25 N 1.31517 * 120.00018 * 0.02562 * 24 22 19 26 26 Si 1.86801 * 119.99722 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.46946 * 60.00275 * 26 24 22 28 28 H 1.48503 * 109.47090 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47072 * 300.00302 * 26 24 22 30 30 C 1.48558 * 111.00218 * 174.70807 * 3 2 1 31 31 H 1.09003 * 109.47297 * 299.99596 * 1 2 3 32 32 H 1.09001 * 109.47226 * 60.00412 * 1 2 3 33 33 H 1.09004 * 109.46570 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47585 * 240.00195 * 2 1 3 35 35 H 1.09001 * 109.47226 * 119.99588 * 2 1 3 36 36 H 1.09003 * 110.41024 * 82.17801 * 4 3 2 37 37 H 1.09007 * 110.40744 * 319.74115 * 4 3 2 38 38 H 1.08997 * 110.32154 * 264.95702 * 5 4 3 39 39 H 1.08998 * 110.40751 * 142.79173 * 5 4 3 40 40 H 1.09000 * 109.47000 * 306.44953 * 8 6 5 41 41 H 1.09003 * 109.47102 * 186.45525 * 8 6 5 42 42 H 1.08998 * 115.55286 * 334.42463 * 11 10 9 43 43 H 1.09005 * 117.49800 * 0.02562 * 12 11 10 44 44 H 1.09003 * 117.49745 * 145.02372 * 12 11 10 45 45 H 1.09004 * 117.49667 * 214.98222 * 13 11 10 46 46 H 1.08999 * 117.50327 * 359.97438 * 13 11 10 47 47 H 1.09000 * 109.47578 * 189.57506 * 18 17 16 48 48 H 1.09008 * 109.47045 * 309.57638 * 18 17 16 49 49 H 1.09002 * 109.47606 * 69.56899 * 18 17 16 50 50 H 1.08995 * 109.46624 * 179.97438 * 21 19 17 51 51 H 1.09005 * 109.46756 * 299.99600 * 21 19 17 52 52 H 1.08996 * 109.46902 * 59.99570 * 21 19 17 53 53 H 0.97005 * 119.99734 * 179.97438 * 25 24 22 54 54 H 1.08996 * 110.41491 * 40.25806 * 30 3 2 55 55 H 1.09002 * 110.41092 * 277.82159 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7471 2.0461 -1.3023 5 6 2.7451 3.2225 -1.3578 6 6 3.8977 2.8151 -0.4169 7 1 3.9911 3.5313 0.3995 8 6 5.2118 2.7234 -1.1951 9 7 5.5979 4.0577 -1.6605 10 6 5.3536 4.6062 -2.8890 11 6 4.6289 3.9463 -4.0338 12 6 4.6452 4.6613 -5.3863 13 6 3.3612 4.6271 -4.5537 14 7 5.8644 5.8049 -2.8868 15 7 6.4056 6.0512 -1.7474 16 6 6.2764 5.0108 -0.9582 17 7 6.7369 4.9026 0.3443 18 6 8.2025 4.8105 0.3787 19 6 6.2604 6.0234 1.1658 20 1 6.6210 6.9617 0.7445 21 6 4.7305 6.0275 1.1851 22 6 6.7796 5.8714 2.5725 23 1 7.4015 5.0270 2.8302 24 6 6.4613 6.8110 3.5300 25 7 5.7043 7.8396 3.2159 26 14 7.1054 6.6229 5.2733 27 1 8.5902 6.6185 5.2546 28 1 6.6237 7.7558 6.1039 29 1 6.6137 5.3447 5.8475 30 6 3.4991 1.4267 0.1279 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.7220 2.4153 -1.3340 37 1 1.9286 1.3544 -2.1250 38 1 2.2717 4.1376 -1.0022 39 1 3.1159 3.3588 -2.3736 40 1 5.0809 2.0632 -2.0525 41 1 5.9916 2.3253 -0.5458 42 1 4.6538 2.8566 -4.0402 43 1 5.1805 5.6088 -5.4483 44 1 4.6804 4.0419 -6.2826 45 1 2.5522 3.9852 -4.9025 46 1 3.0511 5.5520 -4.0675 47 1 8.5271 4.5570 1.3879 48 1 8.5343 4.0375 -0.3146 49 1 8.6338 5.7685 0.0881 50 1 4.3771 6.8588 1.7950 51 1 4.3547 6.1372 0.1677 52 1 4.3700 5.0891 1.6064 53 1 5.4801 8.5004 3.8898 54 1 3.9548 0.6383 -0.4709 55 1 3.7932 1.3296 1.1730 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460534590.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:49 Heat of formation + Delta-G solvation = 105.098192 kcal Electronic energy + Delta-G solvation = -33076.980449 eV Core-core repulsion = 29150.816915 eV Total energy + Delta-G solvation = -3926.163535 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.00010 -40.21966 -38.96369 -37.89100 -36.53035 -34.89180 -33.93043 -31.46831 -30.70109 -30.44443 -30.09859 -27.63097 -26.65098 -26.06554 -25.04281 -23.93759 -23.53494 -23.15734 -21.79882 -21.78184 -20.73100 -20.55926 -18.50502 -18.10151 -17.63198 -17.23917 -16.93224 -16.70705 -16.36245 -16.20215 -15.65268 -15.51245 -15.24544 -15.03669 -14.89292 -14.24789 -14.09892 -14.02815 -13.82101 -13.69211 -13.42291 -13.13105 -13.03880 -12.89592 -12.72839 -12.67471 -12.47066 -12.36457 -12.32515 -12.28654 -12.24601 -12.20783 -12.07911 -12.04944 -11.81354 -11.61957 -11.56686 -11.49987 -11.37314 -11.09401 -10.85682 -10.57650 -9.82472 -9.48693 -9.39183 -8.14537 -6.29213 0.75020 1.32624 1.44953 1.46939 1.54501 1.80541 2.41169 2.94146 2.97682 3.05195 3.17149 3.27294 3.50492 3.68030 3.74255 3.81832 3.94544 3.95316 4.08018 4.14503 4.22762 4.23443 4.30691 4.40797 4.45601 4.49140 4.58325 4.60967 4.64788 4.69299 4.70660 4.78617 4.81675 4.82952 4.87014 4.91872 4.96469 4.97179 4.99499 5.03637 5.07366 5.11737 5.19208 5.21561 5.27981 5.32474 5.36809 5.39732 5.56872 5.64388 5.90021 5.90936 5.98044 6.13650 6.16220 6.63293 6.81230 7.40059 7.80045 8.92456 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008403 B = 0.004197 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.529124 B = 6669.477493 C = 9020.397017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 N -0.534 5.534 4 C 0.045 3.955 5 C -0.122 4.122 6 C -0.106 4.106 7 H 0.055 0.945 8 C 0.122 3.878 9 N -0.458 5.458 10 C 0.211 3.789 11 C -0.093 4.093 12 C -0.143 4.143 13 C -0.149 4.149 14 N -0.332 5.332 15 N -0.366 5.366 16 C 0.365 3.635 17 N -0.463 5.463 18 C 0.055 3.945 19 C 0.241 3.759 20 H -0.031 1.031 21 C -0.101 4.101 22 C -0.523 4.523 23 H 0.074 0.926 24 C 0.013 3.987 25 N -0.922 5.922 26 Si 0.969 3.031 27 H -0.267 1.267 28 H -0.288 1.288 29 H -0.266 1.266 30 C 0.053 3.947 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.156 0.844 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.012 0.988 50 H 0.062 0.938 51 H -0.006 1.006 52 H 0.037 0.963 53 H 0.263 0.737 54 H 0.073 0.927 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 -20.575 -14.038 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 N -0.259 5.259 4 C -0.082 4.082 5 C -0.160 4.160 6 C -0.126 4.126 7 H 0.073 0.927 8 C 0.001 3.999 9 N -0.150 5.150 10 C -0.057 4.057 11 C -0.113 4.113 12 C -0.180 4.180 13 C -0.187 4.187 14 N -0.172 5.172 15 N -0.209 5.209 16 C 0.008 3.992 17 N -0.189 5.189 18 C -0.092 4.092 19 C 0.135 3.865 20 H -0.013 1.013 21 C -0.159 4.159 22 C -0.561 4.561 23 H 0.093 0.907 24 C -0.186 4.186 25 N -0.561 5.561 26 Si 0.793 3.207 27 H -0.192 1.192 28 H -0.214 1.214 29 H -0.191 1.191 30 C -0.075 4.075 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.173 0.827 43 H 0.100 0.900 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.031 0.969 50 H 0.081 0.919 51 H 0.013 0.987 52 H 0.056 0.944 53 H 0.072 0.928 54 H 0.091 0.909 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.066 -19.226 -13.749 24.975 hybrid contribution 0.707 0.128 0.975 1.211 sum -7.359 -19.098 -12.774 24.126 Atomic orbital electron populations 1.21728 0.94317 1.02247 1.01915 1.22283 0.96736 0.88190 1.01543 1.65376 1.11232 1.17253 1.32019 1.23058 0.99397 0.95111 0.90671 1.22434 0.95468 0.97975 1.00093 1.22185 0.93727 0.98654 0.98076 0.92659 1.22145 0.97629 0.79233 1.00942 1.46372 1.41891 1.15396 1.11353 1.24415 1.01921 0.91792 0.87535 1.20378 1.01785 0.99074 0.90062 1.23100 0.99853 1.02183 0.92893 1.23147 0.91488 1.02045 1.02066 1.73796 1.14577 1.14030 1.14776 1.74587 1.22748 1.23809 0.99716 1.22648 0.97740 0.86187 0.92658 1.59181 1.11886 1.46787 1.01066 1.22202 0.84151 0.99479 1.03408 1.19009 0.92221 0.84270 0.91035 1.01323 1.21488 0.97462 1.00837 0.96132 1.21302 1.31867 1.09341 0.93561 0.90746 1.25791 0.95116 0.94527 1.03196 1.70062 1.37639 1.12881 1.35526 0.85449 0.78869 0.77724 0.78640 1.19229 1.21376 1.19089 1.22925 0.88420 0.94603 1.01547 0.93313 0.92618 0.90792 0.93190 0.90724 0.90317 0.91384 0.94464 0.89200 0.85462 0.88190 0.82659 0.89957 0.84456 0.84299 0.90971 0.89062 0.91059 0.96886 0.91932 0.98691 0.94356 0.92827 0.90907 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.97 71.98 0.72 -1.24 16 2 C 0.04 0.60 5.53 86.30 0.48 1.07 16 3 N -0.53 -10.74 5.37 -881.49 -4.73 -15.48 16 4 C 0.05 0.80 5.74 86.45 0.50 1.29 16 5 C -0.12 -2.80 6.43 31.49 0.20 -2.60 16 6 C -0.11 -2.70 3.31 -9.90 -0.03 -2.74 16 7 H 0.05 1.98 6.46 -2.39 -0.02 1.97 16 8 C 0.12 2.85 5.20 86.38 0.45 3.30 16 9 N -0.46 -14.99 2.64 -514.85 -1.36 -16.35 16 10 C 0.21 6.74 7.06 137.64 0.97 7.71 16 11 C -0.09 -1.80 4.21 -11.54 -0.05 -1.85 16 12 C -0.14 -2.44 10.15 30.62 0.31 -2.13 16 13 C -0.15 -2.52 9.38 30.62 0.29 -2.24 16 14 N -0.33 -13.91 11.79 -49.54 -0.58 -14.50 16 15 N -0.37 -17.65 11.98 -58.01 -0.69 -18.35 16 16 C 0.37 15.62 5.07 260.11 1.32 16.94 16 17 N -0.46 -20.70 4.66 -710.99 -3.31 -24.01 16 18 C 0.06 2.21 9.11 127.69 1.16 3.38 16 19 C 0.24 12.94 1.95 44.17 0.09 13.03 16 20 H -0.03 -1.96 8.00 -2.39 -0.02 -1.98 16 21 C -0.10 -5.40 8.57 71.98 0.62 -4.78 16 22 C -0.52 -28.53 7.98 25.60 0.20 -28.33 16 23 H 0.07 3.84 6.41 -2.91 -0.02 3.82 16 24 C 0.01 0.71 5.30 84.65 0.45 1.16 16 25 N -0.92 -54.73 11.32 21.45 0.24 -54.48 16 26 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 C 0.05 1.07 6.03 86.45 0.52 1.59 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.73 7.26 -2.39 -0.02 0.71 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.05 0.58 7.88 -2.39 -0.02 0.57 16 35 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 36 H 0.08 1.41 7.76 -2.39 -0.02 1.39 16 37 H 0.07 0.86 7.82 -2.38 -0.02 0.84 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.79 4.03 -2.39 -0.01 1.78 16 40 H 0.13 1.87 7.25 -2.39 -0.02 1.85 16 41 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.16 1.84 7.43 -2.39 -0.02 1.83 16 43 H 0.08 1.92 7.92 -2.38 -0.02 1.90 16 44 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.14 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.09 3.55 6.45 -2.39 -0.02 3.53 16 48 H 0.07 2.40 8.06 -2.38 -0.02 2.38 16 49 H 0.01 0.56 8.13 -2.39 -0.02 0.54 16 50 H 0.06 3.68 6.07 -2.39 -0.01 3.67 16 51 H -0.01 -0.32 7.22 -2.38 -0.02 -0.34 16 52 H 0.04 1.95 6.79 -2.39 -0.02 1.93 16 53 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 54 H 0.07 1.04 7.72 -2.39 -0.02 1.02 16 55 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -75.00 419.85 0.64 -74.36 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.86 Total: 19.87 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 8.19 Total: 3.57 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -10.44 Total: -143.17 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -75.00 0.64 -74.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460534590.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.461 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds