Wall clock time and date at job start Wed Apr 1 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.46885 * 2 1 4 4 C 1.48565 * 110.99905 * 290.12524 * 3 2 1 5 5 C 1.54374 * 104.59449 * 200.96288 * 4 3 2 6 6 C 1.54258 * 105.06223 * 23.85108 * 5 4 3 7 7 H 1.09002 * 110.32630 * 241.00446 * 6 5 4 8 8 C 1.53006 * 110.32536 * 118.89520 * 6 5 4 9 9 N 1.46507 * 109.46840 * 66.27116 * 8 6 5 10 10 C 1.36733 * 127.13449 * 264.00718 * 9 8 6 11 11 C 1.50697 * 126.35077 * 0.03601 * 10 9 8 12 12 C 1.53006 * 117.49745 * 189.00120 * 11 10 9 13 13 C 1.52993 * 117.50074 * 120.34209 * 11 10 9 14 14 N 1.30299 * 107.30040 * 180.22782 * 10 9 8 15 15 N 1.28526 * 110.05807 * 359.77210 * 14 10 9 16 16 C 1.31220 * 109.85808 * 359.97438 * 15 14 10 17 17 N 1.38580 * 126.47314 * 179.97438 * 16 15 14 18 18 C 1.46902 * 110.99833 * 68.23828 * 17 16 15 19 19 C 1.46895 * 111.00194 * 304.27980 * 17 16 15 20 20 H 1.09002 * 109.46787 * 60.00142 * 19 17 16 21 21 C 1.52997 * 109.47380 * 300.00116 * 19 17 16 22 22 C 1.50699 * 109.47360 * 179.97438 * 19 17 16 23 23 H 1.08006 * 119.99818 * 0.02562 * 22 19 17 24 24 C 1.37875 * 120.00564 * 179.72552 * 22 19 17 25 25 N 1.31520 * 119.99384 * 0.27760 * 24 22 19 26 26 Si 1.86802 * 120.00405 * 180.27770 * 24 22 19 27 27 H 1.48495 * 109.47085 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47006 * 120.00279 * 26 24 22 29 29 H 1.48499 * 109.47034 * 239.99939 * 26 24 22 30 30 C 1.48561 * 110.99897 * 174.70743 * 3 2 1 31 31 H 1.09003 * 109.47584 * 60.00061 * 1 2 3 32 32 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47362 * 300.00097 * 1 2 3 34 34 H 1.08996 * 109.47078 * 239.99925 * 2 1 3 35 35 H 1.08995 * 109.47329 * 119.99344 * 2 1 3 36 36 H 1.08998 * 110.41112 * 82.17922 * 4 3 2 37 37 H 1.08999 * 110.40888 * 319.73978 * 4 3 2 38 38 H 1.09005 * 110.32373 * 264.95874 * 5 4 3 39 39 H 1.09001 * 110.41110 * 142.79205 * 5 4 3 40 40 H 1.08999 * 109.46816 * 306.27394 * 8 6 5 41 41 H 1.09002 * 109.46999 * 186.26916 * 8 6 5 42 42 H 1.08999 * 115.55126 * 334.66349 * 11 10 9 43 43 H 1.08995 * 117.49964 * 359.97438 * 12 11 10 44 44 H 1.09003 * 117.49941 * 145.01865 * 12 11 10 45 45 H 1.08997 * 117.50063 * 214.98195 * 13 11 10 46 46 H 1.09008 * 117.49809 * 359.97438 * 13 11 10 47 47 H 1.08996 * 109.46587 * 289.81005 * 18 17 16 48 48 H 1.08998 * 109.46986 * 49.80941 * 18 17 16 49 49 H 1.08998 * 109.46776 * 169.81003 * 18 17 16 50 50 H 1.09002 * 109.47182 * 299.99784 * 21 19 17 51 51 H 1.09003 * 109.47064 * 59.99746 * 21 19 17 52 52 H 1.09004 * 109.46953 * 180.02562 * 21 19 17 53 53 H 0.97003 * 119.99247 * 179.97438 * 25 24 22 54 54 H 1.08998 * 110.41311 * 40.26251 * 30 3 2 55 55 H 1.08998 * 110.41282 * 277.81480 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7471 2.0461 -1.3023 5 6 2.7451 3.2225 -1.3578 6 6 3.8977 2.8151 -0.4169 7 1 3.9911 3.5312 0.3995 8 6 5.2118 2.7232 -1.1952 9 7 5.5957 4.0570 -1.6644 10 6 5.3506 4.6015 -2.8944 11 6 4.6261 3.9375 -4.0369 12 6 4.6465 4.6456 -5.3931 13 6 3.3610 4.6188 -4.5624 14 7 5.8631 5.7994 -2.8970 15 7 6.4070 6.0486 -1.7594 16 6 6.2690 5.0147 -0.9633 17 7 6.7265 4.9123 0.3408 18 6 5.9874 5.8178 1.2306 19 6 8.1715 5.1663 0.4133 20 1 8.3826 6.1709 0.0467 21 6 8.9132 4.1426 -0.4486 22 6 8.6314 5.0470 1.8434 23 1 7.9213 4.8061 2.6207 24 6 9.9598 5.2392 2.1588 25 7 10.8245 5.5322 1.2121 26 14 10.5312 5.0837 3.9304 27 1 9.3725 4.7491 4.7967 28 1 11.5497 4.0075 4.0293 29 1 11.1260 6.3702 4.3734 30 6 3.4991 1.4267 0.1279 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 0.7220 2.4153 -1.3341 37 1 1.9286 1.3544 -2.1250 38 1 2.2717 4.1377 -1.0022 39 1 3.1159 3.3588 -2.3737 40 1 5.0818 2.0605 -2.0507 41 1 5.9924 2.3282 -0.5448 42 1 4.6483 2.8478 -4.0378 43 1 5.1835 5.5918 -5.4589 44 1 4.6816 4.0216 -6.2862 45 1 2.5510 3.9772 -4.9093 46 1 3.0524 5.5471 -4.0815 47 1 6.2613 6.8491 1.0082 48 1 4.9166 5.6850 1.0762 49 1 6.2359 5.5912 2.2674 50 1 8.7021 3.1380 -0.0821 51 1 8.5804 4.2294 -1.4830 52 1 9.9854 4.3309 -0.3944 53 1 11.7590 5.6678 1.4341 54 1 3.9548 0.6382 -0.4710 55 1 3.7932 1.3297 1.1730 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460534591.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:53 Heat of formation + Delta-G solvation = 104.593059 kcal Electronic energy + Delta-G solvation = -32755.445706 eV Core-core repulsion = 28829.260267 eV Total energy + Delta-G solvation = -3926.185439 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.00464 -40.22623 -38.96694 -37.89451 -36.54375 -34.88689 -33.93373 -31.47297 -30.65849 -30.49852 -30.09723 -27.59652 -26.68813 -26.07895 -25.04304 -23.93482 -23.52242 -23.16987 -21.83308 -21.77373 -20.77021 -20.48529 -18.52457 -18.18396 -17.61224 -17.18761 -16.92818 -16.65678 -16.56544 -16.09185 -15.56115 -15.45345 -15.39868 -15.03531 -14.90139 -14.23823 -14.12668 -14.04201 -13.83262 -13.71694 -13.42412 -13.09431 -13.08064 -12.88620 -12.76108 -12.65880 -12.45643 -12.35526 -12.30341 -12.29532 -12.23579 -12.21430 -12.07523 -12.04561 -11.86004 -11.62892 -11.58673 -11.54281 -11.37231 -11.08292 -10.86124 -10.59920 -9.79302 -9.53148 -9.42169 -8.15560 -6.29892 0.75733 1.30802 1.43863 1.45537 1.57696 1.79787 2.40945 2.93195 2.95487 3.05084 3.16373 3.26850 3.48727 3.66788 3.73519 3.79354 3.93426 3.94505 4.08973 4.14594 4.22189 4.24005 4.31032 4.41556 4.44032 4.50425 4.57855 4.60068 4.65490 4.68034 4.72228 4.76797 4.81622 4.82457 4.86308 4.91771 4.95945 4.98215 4.98494 5.04155 5.06798 5.10785 5.19109 5.20423 5.23745 5.32278 5.35949 5.38714 5.55930 5.64155 5.87773 5.89741 5.96614 6.12750 6.13745 6.62680 6.81159 7.39521 7.79260 8.91921 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.003586 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.928800 B = 7806.842579 C =10001.209372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.527 5.527 4 C 0.043 3.957 5 C -0.122 4.122 6 C -0.097 4.097 7 H 0.062 0.938 8 C 0.119 3.881 9 N -0.457 5.457 10 C 0.212 3.788 11 C -0.096 4.096 12 C -0.149 4.149 13 C -0.139 4.139 14 N -0.331 5.331 15 N -0.365 5.365 16 C 0.365 3.635 17 N -0.462 5.462 18 C 0.060 3.940 19 C 0.237 3.763 20 H -0.030 1.030 21 C -0.109 4.109 22 C -0.520 4.520 23 H 0.074 0.926 24 C 0.012 3.988 25 N -0.922 5.922 26 Si 0.969 3.031 27 H -0.259 1.259 28 H -0.280 1.280 29 H -0.284 1.284 30 C 0.050 3.950 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.080 0.920 47 H 0.013 0.987 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.040 0.960 51 H -0.003 1.003 52 H 0.067 0.933 53 H 0.263 0.737 54 H 0.064 0.936 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.525 -14.228 -8.651 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 N -0.252 5.252 4 C -0.085 4.085 5 C -0.160 4.160 6 C -0.117 4.117 7 H 0.081 0.919 8 C -0.003 4.003 9 N -0.149 5.149 10 C -0.056 4.056 11 C -0.117 4.117 12 C -0.187 4.187 13 C -0.177 4.177 14 N -0.171 5.171 15 N -0.208 5.208 16 C 0.008 3.992 17 N -0.188 5.188 18 C -0.088 4.088 19 C 0.131 3.869 20 H -0.013 1.013 21 C -0.168 4.168 22 C -0.559 4.559 23 H 0.092 0.908 24 C -0.187 4.187 25 N -0.561 5.561 26 Si 0.794 3.206 27 H -0.183 1.183 28 H -0.205 1.205 29 H -0.211 1.211 30 C -0.079 4.079 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.168 0.832 43 H 0.100 0.900 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.098 0.902 47 H 0.032 0.968 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.059 0.941 51 H 0.016 0.984 52 H 0.085 0.915 53 H 0.072 0.928 54 H 0.082 0.918 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.283 -13.058 -8.510 26.379 hybrid contribution 1.358 -0.268 0.665 1.536 sum -19.924 -13.326 -7.845 25.221 Atomic orbital electron populations 1.21717 0.94069 1.02222 1.02086 1.22292 0.96897 0.88380 1.01392 1.65413 1.10856 1.17010 1.31882 1.23084 0.99711 0.95196 0.90513 1.22463 0.95123 0.98334 1.00074 1.22097 0.93102 0.98596 0.97901 0.91940 1.22137 0.97932 0.79361 1.00836 1.46361 1.42506 1.14910 1.11129 1.24395 1.01909 0.91966 0.87348 1.20353 1.02348 0.98850 0.90108 1.23105 1.00465 1.02230 0.92860 1.23153 0.91069 1.02060 1.01393 1.73795 1.14062 1.14377 1.14863 1.74585 1.21840 1.24539 0.99820 1.22635 0.97104 0.86090 0.93419 1.59158 1.07181 1.53384 0.99088 1.22140 0.96175 0.92867 0.97608 1.19062 0.79287 0.92245 0.96321 1.01259 1.21539 1.02457 0.98549 0.94232 1.21360 0.94080 1.48182 0.92246 0.90819 1.25792 0.96647 0.94455 1.01784 1.70068 1.03431 1.48479 1.34158 0.85328 0.78451 0.77461 0.79322 1.18305 1.20528 1.21050 1.22955 0.88546 0.94678 1.01703 0.92561 0.91057 0.92893 0.93692 0.90732 0.89779 0.92091 0.92981 0.89535 0.86166 0.89127 0.83237 0.89987 0.84844 0.84265 0.90159 0.96797 0.91660 0.89172 0.94055 0.98402 0.91472 0.92782 0.91803 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.97 71.98 0.72 -0.89 16 2 C 0.04 0.49 5.53 86.30 0.48 0.97 16 3 N -0.53 -8.84 5.37 -881.50 -4.73 -13.58 16 4 C 0.04 0.61 5.74 86.45 0.50 1.11 16 5 C -0.12 -2.25 6.42 31.49 0.20 -2.05 16 6 C -0.10 -2.10 3.31 -9.90 -0.03 -2.13 16 7 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 8 C 0.12 2.87 5.20 86.38 0.45 3.32 16 9 N -0.46 -15.09 2.64 -514.82 -1.36 -16.45 16 10 C 0.21 6.78 7.06 137.64 0.97 7.75 16 11 C -0.10 -1.89 4.21 -11.54 -0.05 -1.94 16 12 C -0.15 -2.62 10.15 30.62 0.31 -2.31 16 13 C -0.14 -2.12 9.39 30.62 0.29 -1.83 16 14 N -0.33 -13.85 11.79 -49.54 -0.58 -14.43 16 15 N -0.37 -17.56 12.04 -58.00 -0.70 -18.26 16 16 C 0.37 15.64 5.03 260.11 1.31 16.95 16 17 N -0.46 -20.70 4.66 -711.02 -3.31 -24.01 16 18 C 0.06 2.45 9.10 127.69 1.16 3.62 16 19 C 0.24 12.64 1.96 44.17 0.09 12.73 16 20 H -0.03 -1.91 8.04 -2.39 -0.02 -1.93 16 21 C -0.11 -5.72 8.84 71.98 0.64 -5.08 16 22 C -0.52 -28.25 7.99 25.60 0.20 -28.04 16 23 H 0.07 3.82 6.41 -2.91 -0.02 3.80 16 24 C 0.01 0.67 5.30 84.65 0.45 1.12 16 25 N -0.92 -54.04 11.31 21.45 0.24 -53.80 16 26 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 28 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 30 C 0.05 0.87 6.03 86.45 0.52 1.40 16 31 H 0.06 0.60 7.26 -2.39 -0.02 0.58 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.04 0.50 7.88 -2.39 -0.02 0.48 16 35 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.08 1.16 7.76 -2.39 -0.02 1.14 16 37 H 0.06 0.68 7.82 -2.39 -0.02 0.66 16 38 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.09 1.46 4.03 -2.39 -0.01 1.45 16 40 H 0.12 2.02 7.25 -2.39 -0.02 2.01 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.15 2.00 7.42 -2.39 -0.02 1.98 16 43 H 0.08 1.96 7.92 -2.39 -0.02 1.94 16 44 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.01 0.61 8.12 -2.39 -0.02 0.59 16 48 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 49 H 0.09 3.60 6.48 -2.39 -0.02 3.58 16 50 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.00 -0.16 7.22 -2.39 -0.02 -0.18 16 52 H 0.07 3.85 6.06 -2.38 -0.01 3.83 16 53 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 54 H 0.06 0.91 7.72 -2.39 -0.02 0.89 16 55 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -72.77 423.21 0.64 -72.13 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.86 Total: 18.67 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 8.20 Total: 4.69 kcal Atomic # 7 Polarization: -130.09 SS G_CDS: -10.44 Total: -140.53 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -72.77 0.64 -72.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460534591.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.724 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds