Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46894 * 109.47265 * 2 1 4 4 C 1.48531 * 111.00391 * 52.59767 * 3 2 1 5 5 C 1.54937 * 103.22607 * 159.72113 * 4 3 2 6 6 C 1.54593 * 102.92241 * 322.58745 * 5 4 3 7 7 H 1.08998 * 110.30951 * 263.03725 * 6 5 4 8 8 C 1.53002 * 110.30686 * 140.87343 * 6 5 4 9 9 N 1.46498 * 109.47319 * 69.28447 * 8 6 5 10 10 C 1.36737 * 127.13742 * 264.32871 * 9 8 6 11 11 C 1.50702 * 126.34862 * 359.95750 * 10 9 8 12 12 N 1.30300 * 107.30403 * 179.83521 * 10 9 8 13 13 N 1.28526 * 110.05514 * 0.43576 * 12 10 9 14 14 C 1.31219 * 109.85879 * 359.72365 * 13 12 10 15 15 N 1.38578 * 126.47380 * 180.02562 * 14 13 12 16 16 C 1.46849 * 110.99935 * 270.87454 * 15 14 13 17 17 C 1.53042 * 109.51954 * 185.83652 * 16 15 14 18 18 C 1.53116 * 109.28009 * 300.82303 * 17 16 15 19 19 C 1.50701 * 109.57386 * 177.59385 * 18 17 16 20 20 H 1.07997 * 119.99877 * 245.77152 * 19 18 17 21 21 C 1.37878 * 119.99949 * 65.76722 * 19 18 17 22 22 N 1.31517 * 120.00282 * 355.15188 * 21 19 18 23 23 Si 1.86804 * 119.99588 * 175.15249 * 21 19 18 24 24 H 1.48503 * 109.46958 * 95.00108 * 23 21 19 25 25 H 1.48501 * 109.46928 * 214.99736 * 23 21 19 26 26 H 1.48500 * 109.47354 * 334.99598 * 23 21 19 27 27 C 1.53115 * 109.16293 * 57.65577 * 18 17 16 28 28 C 1.46846 * 110.99749 * 35.08330 * 15 14 13 29 29 C 1.47899 * 111.00321 * 170.00000 * 3 2 1 30 30 H 1.09004 * 109.46931 * 60.00101 * 1 2 3 31 31 H 1.09003 * 109.46786 * 300.00537 * 1 2 3 32 32 H 1.08998 * 109.47264 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46670 * 119.99415 * 2 1 3 34 34 H 1.08994 * 109.46695 * 239.99632 * 2 1 3 35 35 H 1.08994 * 110.67437 * 278.15931 * 4 3 2 36 36 H 1.09006 * 110.66518 * 41.29049 * 4 3 2 37 37 H 1.09002 * 110.72678 * 204.23004 * 5 4 3 38 38 H 1.08998 * 110.72743 * 80.95282 * 5 4 3 39 39 H 1.09002 * 109.47281 * 189.28593 * 8 6 5 40 40 H 1.09007 * 109.47332 * 309.28519 * 8 6 5 41 41 H 1.08999 * 109.46888 * 90.00220 * 11 10 9 42 42 H 1.08997 * 109.47032 * 210.00251 * 11 10 9 43 43 H 1.09003 * 109.47276 * 330.00619 * 11 10 9 44 44 H 1.08994 * 109.46079 * 305.85167 * 16 15 14 45 45 H 1.08999 * 109.46344 * 65.82811 * 16 15 14 46 46 H 1.08999 * 109.50300 * 180.87601 * 17 16 15 47 47 H 1.09000 * 109.53682 * 60.78558 * 17 16 15 48 48 H 1.09002 * 109.51999 * 297.74945 * 18 17 16 49 49 H 0.97001 * 119.99819 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.50312 * 182.40881 * 27 18 17 51 51 H 1.09002 * 109.53551 * 62.30695 * 27 18 17 52 52 H 1.09001 * 109.46664 * 294.17589 * 28 15 14 53 53 H 1.09003 * 109.46514 * 54.15674 * 28 15 14 54 54 H 1.09004 * 109.91183 * 333.50596 * 29 3 2 55 55 H 1.09004 * 109.91776 * 94.79751 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1015 5 6 2.3782 3.3585 1.2791 6 6 3.7624 2.7090 1.0511 7 1 4.2236 2.4563 2.0059 8 6 4.6673 3.6526 0.2564 9 7 5.0226 4.8047 1.0886 10 6 4.4080 6.0260 1.1134 11 6 3.2247 6.4475 0.2808 12 7 5.0335 6.7568 1.9924 13 7 5.9996 6.0886 2.5138 14 6 6.0391 4.8837 1.9955 15 7 6.9421 3.8807 2.3102 16 6 8.1370 3.9630 1.4606 17 6 9.0427 2.7600 1.7342 18 6 9.4435 2.7546 3.2120 19 6 10.2873 1.5401 3.5018 20 1 9.9164 0.7699 4.1618 21 6 11.5328 1.4123 2.9244 22 7 11.9455 2.3012 2.0474 23 14 12.6341 -0.0237 3.3878 24 1 12.4561 -1.1217 2.4038 25 1 14.0517 0.4186 3.3849 26 1 12.2700 -0.5096 4.7430 27 6 8.1796 2.7175 4.0754 28 6 7.2990 3.9217 3.7340 29 6 3.4784 1.4314 0.2398 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 0.4126 2.5208 0.8150 36 1 1.3517 1.5732 2.0138 37 1 2.3061 3.7693 2.2862 38 1 2.1860 4.1291 0.5325 39 1 5.5739 3.1241 -0.0385 40 1 4.1412 3.9962 -0.6343 41 1 2.3034 6.2141 0.8144 42 1 3.2751 7.5203 0.0948 43 1 3.2398 5.9129 -0.6690 44 1 7.8382 3.9617 0.4125 45 1 8.6780 4.8828 1.6829 46 1 9.9369 2.8294 1.1148 47 1 8.5077 1.8400 1.4989 48 1 10.0129 3.6562 3.4382 49 1 12.8216 2.2110 1.6409 50 1 8.4572 2.7567 5.1288 51 1 7.6301 1.7971 3.8778 52 1 7.8439 4.8418 3.9456 53 1 6.3914 3.8903 4.3370 54 1 3.7895 0.5543 0.8073 55 1 4.0100 1.4695 -0.7111 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460536102.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = 63.945909 kcal Electronic energy + Delta-G solvation = -32304.372273 eV Core-core repulsion = 28376.424241 eV Total energy + Delta-G solvation = -3927.948032 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.03625 -40.27724 -39.94185 -36.68909 -35.91542 -34.02936 -33.66818 -32.19013 -31.69928 -30.50771 -30.18064 -28.50693 -27.33518 -26.49897 -24.43065 -24.10833 -23.91736 -22.32196 -22.00038 -21.49388 -20.98875 -20.33714 -18.59365 -18.30567 -17.50358 -17.44023 -16.88733 -16.51249 -16.25181 -15.78382 -15.70092 -15.35689 -15.01436 -14.90914 -14.65910 -14.55253 -14.38296 -14.20314 -13.95669 -13.69715 -13.49736 -13.44964 -13.25331 -13.10698 -12.95317 -12.82783 -12.75114 -12.44846 -12.40938 -12.30878 -12.21706 -12.14335 -12.07222 -11.98920 -11.86982 -11.64339 -11.58902 -11.41426 -11.00621 -10.90616 -10.78854 -10.40632 -10.29739 -9.51482 -9.42084 -8.09327 -6.20985 0.71522 1.24858 1.41740 1.44045 1.53899 1.77782 2.44480 2.69403 3.01925 3.19465 3.43666 3.48152 3.55902 3.69495 3.86297 3.92894 4.02510 4.12049 4.19795 4.22906 4.25666 4.30975 4.34967 4.35656 4.46264 4.52388 4.58200 4.59854 4.61958 4.64401 4.70367 4.73116 4.84381 4.87241 4.87980 4.91192 4.95467 4.96394 4.98765 5.05421 5.11862 5.12642 5.18837 5.20801 5.23200 5.32713 5.46396 5.57707 5.71512 5.72009 5.88616 5.97501 6.06270 6.09817 6.29683 6.37805 6.90112 7.46989 7.72226 8.96806 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.003064 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.105294 B = 9136.555660 C =11145.640798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.037 3.963 3 N -0.518 5.518 4 C 0.039 3.961 5 C -0.116 4.116 6 C -0.103 4.103 7 H 0.062 0.938 8 C 0.121 3.879 9 N -0.460 5.460 10 C 0.190 3.810 11 C -0.064 4.064 12 N -0.335 5.335 13 N -0.358 5.358 14 C 0.348 3.652 15 N -0.450 5.450 16 C 0.081 3.919 17 C -0.086 4.086 18 C 0.043 3.957 19 C -0.528 4.528 20 H 0.055 0.945 21 C 0.014 3.986 22 N -0.918 5.918 23 Si 0.952 3.048 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.269 1.269 27 C -0.094 4.094 28 C 0.087 3.913 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.017 0.983 46 H 0.065 0.935 47 H 0.048 0.952 48 H -0.010 1.010 49 H 0.260 0.740 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.030 0.970 53 H 0.075 0.925 54 H 0.044 0.956 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.574 -0.886 -8.584 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 N -0.242 5.242 4 C -0.089 4.089 5 C -0.154 4.154 6 C -0.124 4.124 7 H 0.080 0.920 8 C 0.000 4.000 9 N -0.153 5.153 10 C -0.079 4.079 11 C -0.122 4.122 12 N -0.175 5.175 13 N -0.201 5.201 14 C -0.010 4.010 15 N -0.175 5.175 16 C -0.046 4.046 17 C -0.124 4.124 18 C 0.025 3.975 19 C -0.566 4.566 20 H 0.073 0.927 21 C -0.185 4.185 22 N -0.558 5.558 23 Si 0.778 3.222 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.193 1.193 27 C -0.132 4.132 28 C -0.040 4.040 29 C -0.081 4.081 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.147 0.853 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.035 0.965 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.008 0.992 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.048 0.952 53 H 0.093 0.907 54 H 0.062 0.938 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.417 0.068 -8.447 26.784 hybrid contribution 1.717 -1.438 0.742 2.359 sum -23.701 -1.370 -7.706 24.959 Atomic orbital electron populations 1.21811 0.93717 1.02501 1.02469 1.22336 0.96956 0.88877 1.00908 1.64911 1.03758 1.12482 1.43094 1.23228 0.99138 0.94031 0.92459 1.22647 0.92549 0.98206 1.02004 1.22215 0.96266 0.95138 0.98735 0.91994 1.22213 1.00966 0.83943 0.92914 1.46441 1.23014 1.13755 1.32097 1.25668 1.00101 0.82049 1.00040 1.20544 0.89903 1.04174 0.97615 1.73895 1.05829 1.26883 1.10902 1.74555 1.17109 1.02309 1.26148 1.22610 0.93270 0.91371 0.93774 1.58857 1.12917 1.38745 1.07026 1.22145 0.88247 0.98665 0.95501 1.21426 0.96652 0.94368 0.99995 1.18675 0.91736 0.95038 0.92061 1.21495 1.01425 1.06042 1.27646 0.92690 1.25723 0.99273 0.98651 0.94851 1.70026 1.19964 1.37059 1.28710 0.85639 0.78039 0.79731 0.78816 1.20086 1.21260 1.19318 1.21570 0.95814 0.96283 0.99523 1.21940 0.99007 0.98346 0.84728 1.22783 0.89758 0.95524 1.00000 0.91680 0.92577 0.91370 0.95328 0.90239 0.88424 0.94444 0.92299 0.88639 0.88946 0.85335 0.87695 0.88058 0.87744 0.90701 0.96484 0.91627 0.93339 0.99217 0.93077 0.91944 0.91901 0.95186 0.90697 0.93806 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.57 71.98 0.69 -0.83 16 2 C 0.04 0.49 5.75 86.31 0.50 0.99 16 3 N -0.52 -7.49 5.40 -883.04 -4.76 -12.25 16 4 C 0.04 0.52 5.10 86.65 0.44 0.96 16 5 C -0.12 -1.67 6.29 31.80 0.20 -1.47 16 6 C -0.10 -1.83 3.23 -9.92 -0.03 -1.86 16 7 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 8 C 0.12 2.21 5.16 86.38 0.45 2.66 16 9 N -0.46 -11.81 2.68 -514.83 -1.38 -13.19 16 10 C 0.19 4.71 7.88 137.64 1.08 5.80 16 11 C -0.06 -0.79 9.08 71.24 0.65 -0.14 16 12 N -0.33 -11.58 12.18 -49.53 -0.60 -12.18 16 13 N -0.36 -14.03 11.67 -58.00 -0.68 -14.70 16 14 C 0.35 11.99 6.72 260.11 1.75 13.74 16 15 N -0.45 -16.29 4.67 -706.13 -3.30 -19.59 16 16 C 0.08 3.21 5.40 86.33 0.47 3.68 16 17 C -0.09 -3.93 5.18 30.65 0.16 -3.77 16 18 C 0.04 2.16 2.10 -11.46 -0.02 2.14 16 19 C -0.53 -28.55 8.49 25.60 0.22 -28.34 16 20 H 0.05 2.91 7.75 -2.91 -0.02 2.89 16 21 C 0.01 0.75 5.36 84.65 0.45 1.20 16 22 N -0.92 -52.56 11.60 21.45 0.25 -52.31 16 23 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C -0.09 -3.88 5.32 30.65 0.16 -3.72 16 28 C 0.09 3.33 5.08 86.33 0.44 3.76 16 29 C 0.05 0.77 6.36 86.44 0.55 1.32 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.57 6.79 -2.39 -0.02 0.55 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.03 0.42 7.81 -2.39 -0.02 0.40 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.05 7.66 -2.39 -0.02 1.03 16 36 H 0.04 0.56 8.00 -2.38 -0.02 0.54 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.10 1.04 5.78 -2.39 -0.01 1.03 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.13 1.51 6.95 -2.38 -0.02 1.50 16 41 H 0.10 0.94 7.47 -2.39 -0.02 0.92 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.10 0.75 7.18 -2.39 -0.02 0.73 16 44 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 3.40 6.43 -2.39 -0.02 3.38 16 47 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 48 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 50 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 51 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.03 1.26 8.06 -2.39 -0.02 1.24 16 53 H 0.07 2.66 8.10 -2.39 -0.02 2.64 16 54 H 0.04 0.79 7.57 -2.38 -0.02 0.78 16 55 H 0.09 1.34 7.68 -2.39 -0.02 1.32 16 Total: -1.00 -68.34 418.50 0.54 -67.79 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.85 Total: 15.19 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 8.14 Total: -3.90 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -10.48 Total: -124.22 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.34 0.54 -67.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460536102.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.740 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds