Wall clock time and date at job start Wed Apr 1 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47220 * 2 1 4 4 C 1.47900 * 111.00001 * 184.87983 * 3 2 1 5 5 C 1.53993 * 107.06133 * 145.84669 * 4 3 2 6 6 C 1.54597 * 105.13624 * 358.77224 * 5 4 3 7 7 H 1.08994 * 110.72412 * 96.57732 * 6 5 4 8 8 C 1.52998 * 110.72418 * 219.68510 * 6 5 4 9 9 N 1.46501 * 109.46969 * 293.55043 * 8 6 5 10 10 C 1.36742 * 127.13202 * 276.04394 * 9 8 6 11 11 C 1.50697 * 126.34765 * 359.96786 * 10 9 8 12 12 N 1.30294 * 107.29882 * 180.23076 * 10 9 8 13 13 N 1.28518 * 110.05956 * 359.77370 * 12 10 9 14 14 C 1.31218 * 109.85890 * 0.02562 * 13 12 10 15 15 N 1.38584 * 126.47052 * 179.97438 * 14 13 12 16 16 C 1.46849 * 110.99550 * 271.32193 * 15 14 13 17 17 C 1.53035 * 109.52277 * 185.80551 * 16 15 14 18 18 C 1.53122 * 109.31163 * 300.88336 * 17 16 15 19 19 C 1.50694 * 109.52461 * 177.53935 * 18 17 16 20 20 H 1.07999 * 120.00133 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00120 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00250 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47358 * 89.99207 * 23 21 19 25 25 H 1.48491 * 109.47102 * 209.99765 * 23 21 19 26 26 H 1.48505 * 109.46884 * 329.99548 * 23 21 19 27 27 C 1.53122 * 109.15994 * 57.63460 * 18 17 16 28 28 C 1.46840 * 111.00425 * 35.57689 * 15 14 13 29 29 C 1.48529 * 111.00102 * 302.27597 * 3 2 1 30 30 H 1.09004 * 109.47447 * 65.80525 * 1 2 3 31 31 H 1.08999 * 109.47226 * 185.81173 * 1 2 3 32 32 H 1.08998 * 109.46742 * 305.80429 * 1 2 3 33 33 H 1.09001 * 109.47024 * 240.00338 * 2 1 3 34 34 H 1.08998 * 109.47299 * 120.00541 * 2 1 3 35 35 H 1.08999 * 109.91984 * 26.48654 * 4 3 2 36 36 H 1.09010 * 109.91540 * 265.20019 * 4 3 2 37 37 H 1.09000 * 110.31062 * 239.85879 * 5 4 3 38 38 H 1.08995 * 110.31023 * 117.68435 * 5 4 3 39 39 H 1.09000 * 109.47204 * 173.54367 * 8 6 5 40 40 H 1.09003 * 109.46859 * 53.54552 * 8 6 5 41 41 H 1.09001 * 109.47316 * 270.28033 * 11 10 9 42 42 H 1.08994 * 109.47467 * 30.28835 * 11 10 9 43 43 H 1.09005 * 109.46948 * 150.28609 * 11 10 9 44 44 H 1.08995 * 109.42715 * 65.81254 * 16 15 14 45 45 H 1.09005 * 109.49659 * 305.83803 * 16 15 14 46 46 H 1.08996 * 109.50543 * 180.91940 * 17 16 15 47 47 H 1.09008 * 109.50620 * 60.84190 * 17 16 15 48 48 H 1.09002 * 109.51943 * 297.67055 * 18 17 16 49 49 H 0.96999 * 120.00321 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.50277 * 62.28727 * 27 18 17 51 51 H 1.08997 * 109.50417 * 182.37176 * 27 18 17 52 52 H 1.09005 * 109.46383 * 54.14155 * 28 15 14 53 53 H 1.09003 * 109.45516 * 294.17306 * 28 15 14 54 54 H 1.08995 * 110.67007 * 81.83855 * 29 3 2 55 55 H 1.09005 * 110.66795 * 318.71234 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4934 1.4261 -0.1175 5 6 3.8464 2.6794 -0.9397 6 6 2.4870 3.3201 -1.3027 7 1 2.2350 4.1142 -0.6000 8 6 2.5058 3.8541 -2.7363 9 7 3.4479 4.9722 -2.8286 10 6 3.2063 6.2826 -2.5218 11 6 1.9068 6.8575 -2.0198 12 7 4.3062 6.9430 -2.7492 13 7 5.2206 6.1444 -3.1710 14 6 4.7490 4.9216 -3.2364 15 7 5.4405 3.7929 -3.6468 16 6 5.3277 3.6058 -5.0989 17 6 5.9776 2.2783 -5.4955 18 6 7.4501 2.2900 -5.0756 19 6 8.0796 0.9621 -5.4094 20 1 7.4895 0.1866 -5.8750 21 6 9.4091 0.7376 -5.1213 22 7 9.9584 -0.4214 -5.4121 23 14 10.4299 2.0792 -4.3167 24 1 10.3444 1.9480 -2.8399 25 1 11.8459 1.9475 -4.7442 26 1 9.9109 3.4090 -4.7262 27 6 7.5404 2.5342 -3.5667 28 6 6.8460 3.8548 -3.2262 29 6 1.4990 2.1337 -1.1724 30 1 -0.3634 0.4212 -0.9374 31 1 -0.3633 -1.0224 0.1041 32 1 -0.3633 0.6012 0.8335 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8502 0.5329 -0.6303 36 1 3.9432 1.4932 0.8733 37 1 4.3859 2.3989 -1.8443 38 1 4.4418 3.3690 -0.3415 39 1 1.5077 4.1963 -3.0097 40 1 2.8164 3.0602 -3.4157 41 1 1.2934 7.1634 -2.8673 42 1 1.3755 6.1028 -1.4402 43 1 2.1119 7.7224 -1.3889 44 1 5.8333 4.4248 -5.6104 45 1 4.2755 3.5943 -5.3836 46 1 5.9082 2.1473 -6.5754 47 1 5.4632 1.4574 -4.9956 48 1 7.9738 3.0851 -5.6062 49 1 10.8936 -0.5795 -5.2092 50 1 7.0504 1.7180 -3.0360 51 1 8.5875 2.5856 -3.2684 52 1 6.8961 4.0247 -2.1506 53 1 7.3450 4.6723 -3.7465 54 1 0.4883 2.4940 -0.9809 55 1 1.5238 1.5123 -2.0676 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460536488.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:02 Heat of formation + Delta-G solvation = 70.384078 kcal Electronic energy + Delta-G solvation = -32844.290708 eV Core-core repulsion = 28916.621856 eV Total energy + Delta-G solvation = -3927.668852 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.04710 -40.23705 -40.11094 -36.66631 -35.98394 -34.06774 -33.90457 -32.28520 -31.97156 -31.07948 -29.37519 -28.69592 -27.38794 -26.97181 -24.36175 -24.12030 -23.62171 -22.35863 -22.13770 -21.53971 -20.94304 -20.47393 -18.86016 -18.49211 -17.48452 -17.37551 -17.17858 -16.49558 -16.29332 -15.85829 -15.74779 -15.43600 -15.02305 -14.93165 -14.90959 -14.68070 -14.33397 -14.25533 -13.96073 -13.80902 -13.65420 -13.50868 -13.43038 -13.39934 -13.26067 -12.86987 -12.77471 -12.52194 -12.30920 -12.21080 -12.20729 -12.18875 -12.00392 -11.78624 -11.77376 -11.70728 -11.56797 -11.39237 -11.08323 -11.00215 -10.96246 -10.67319 -10.32204 -9.53762 -9.42419 -8.30493 -6.32714 0.70936 1.21805 1.27874 1.35147 1.43345 1.77999 2.30413 2.62916 2.97770 3.05256 3.41943 3.56799 3.61338 3.64015 3.80612 3.95188 3.96301 4.02286 4.18696 4.20861 4.22265 4.25899 4.29281 4.36397 4.38586 4.44136 4.47636 4.53361 4.55128 4.63085 4.70640 4.71640 4.73269 4.76274 4.81699 4.89501 4.93274 4.97155 4.98679 5.01664 5.02999 5.07542 5.09373 5.15645 5.19444 5.27380 5.35918 5.44137 5.60403 5.66732 5.70878 5.75521 5.88777 6.07358 6.26786 6.31090 6.74421 7.32831 7.72141 8.86135 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.003836 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.600707 B = 7296.638470 C = 9385.925762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.038 3.962 3 N -0.523 5.523 4 C 0.039 3.961 5 C -0.127 4.127 6 C -0.093 4.093 7 H 0.092 0.908 8 C 0.116 3.884 9 N -0.459 5.459 10 C 0.189 3.811 11 C -0.062 4.062 12 N -0.336 5.336 13 N -0.359 5.359 14 C 0.352 3.648 15 N -0.448 5.448 16 C 0.073 3.927 17 C -0.084 4.084 18 C 0.011 3.989 19 C -0.509 4.509 20 H 0.041 0.959 21 C 0.018 3.982 22 N -0.948 5.948 23 Si 0.937 3.063 24 H -0.266 1.266 25 H -0.300 1.300 26 H -0.253 1.253 27 C -0.108 4.108 28 C 0.085 3.915 29 C 0.050 3.950 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.033 0.967 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.016 0.984 49 H 0.265 0.735 50 H 0.068 0.932 51 H 0.041 0.959 52 H 0.072 0.928 53 H 0.036 0.964 54 H 0.108 0.892 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.654 8.009 10.737 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 N -0.248 5.248 4 C -0.089 4.089 5 C -0.166 4.166 6 C -0.113 4.113 7 H 0.111 0.889 8 C -0.006 4.006 9 N -0.152 5.152 10 C -0.080 4.080 11 C -0.121 4.121 12 N -0.176 5.176 13 N -0.202 5.202 14 C -0.005 4.005 15 N -0.173 5.173 16 C -0.053 4.053 17 C -0.122 4.122 18 C -0.008 4.008 19 C -0.547 4.547 20 H 0.059 0.941 21 C -0.180 4.180 22 N -0.588 5.588 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.228 1.228 26 H -0.177 1.177 27 C -0.145 4.145 28 C -0.042 4.042 29 C -0.078 4.078 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.051 0.949 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.034 0.966 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.060 0.940 52 H 0.090 0.910 53 H 0.055 0.945 54 H 0.126 0.874 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.941 8.847 11.348 28.794 hybrid contribution 1.502 -0.899 -0.762 1.909 sum -23.439 7.948 10.585 26.919 Atomic orbital electron populations 1.21766 0.93193 1.02574 1.02615 1.22320 0.97351 0.88643 1.00716 1.64860 1.05647 1.13911 1.40356 1.22777 0.89079 0.97175 0.99875 1.22440 0.97497 0.96360 1.00273 1.22355 0.95287 0.98430 0.95221 0.88932 1.22198 0.93154 0.87006 0.98234 1.46407 1.10286 1.09751 1.48782 1.25710 1.00020 0.80414 1.01819 1.20476 0.86666 1.02206 1.02758 1.73907 0.98380 1.26716 1.18621 1.74552 1.25220 0.99044 1.21402 1.22465 0.84898 0.91084 1.02092 1.58756 1.13387 1.29603 1.15572 1.22224 1.01544 0.98022 0.83540 1.21374 0.94969 0.95296 1.00581 1.19169 0.94601 0.94982 0.92073 1.21305 0.95248 0.99279 1.38917 0.94098 1.25751 0.99109 0.97018 0.96078 1.70024 1.13605 1.25013 1.50199 0.86015 0.77074 0.81147 0.79247 1.19195 1.22773 1.17735 1.21883 0.97780 0.95734 0.99142 1.21916 0.84773 0.97608 0.99946 1.23210 0.99027 0.93320 0.92234 0.91962 0.91405 0.91824 0.95137 0.91013 0.94266 0.91019 0.90777 0.93477 0.84923 0.88334 0.87652 0.87730 0.88350 0.94879 0.88948 0.91259 0.91554 0.96602 0.92644 0.91377 0.94049 0.90974 0.94544 0.87407 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.56 71.98 0.69 -0.85 16 2 C 0.04 0.57 5.58 86.30 0.48 1.05 16 3 N -0.52 -8.76 5.36 -883.02 -4.73 -13.49 16 4 C 0.04 0.80 6.70 86.45 0.58 1.38 16 5 C -0.13 -2.72 6.09 31.47 0.19 -2.53 16 6 C -0.09 -1.34 3.31 -9.59 -0.03 -1.37 16 7 H 0.09 1.28 7.85 -2.39 -0.02 1.26 16 8 C 0.12 1.60 5.19 86.38 0.45 2.05 16 9 N -0.46 -10.07 2.65 -514.85 -1.36 -11.43 16 10 C 0.19 4.19 8.07 137.64 1.11 5.30 16 11 C -0.06 -0.63 10.20 71.23 0.73 0.10 16 12 N -0.34 -10.76 12.18 -49.54 -0.60 -11.36 16 13 N -0.36 -12.87 11.68 -58.01 -0.68 -13.54 16 14 C 0.35 10.64 6.46 260.11 1.68 12.32 16 15 N -0.45 -13.95 3.63 -706.16 -2.56 -16.51 16 16 C 0.07 2.25 5.40 86.32 0.47 2.71 16 17 C -0.08 -3.03 5.32 30.65 0.16 -2.87 16 18 C 0.01 0.48 1.75 -11.46 -0.02 0.46 16 19 C -0.51 -28.16 9.14 25.60 0.23 -27.93 16 20 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 21 C 0.02 1.02 5.45 84.66 0.46 1.48 16 22 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 23 Si 0.94 45.45 24.37 68.60 1.67 47.12 16 24 H -0.27 -12.29 6.89 99.48 0.69 -11.60 16 25 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 26 H -0.25 -11.69 6.53 99.48 0.65 -11.04 16 27 C -0.11 -4.43 4.84 30.65 0.15 -4.29 16 28 C 0.08 3.07 5.09 86.33 0.44 3.51 16 29 C 0.05 0.61 4.79 86.65 0.41 1.03 16 30 H 0.06 0.57 7.21 -2.38 -0.02 0.55 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.03 0.50 7.96 -2.39 -0.02 0.48 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.87 7.66 -2.39 -0.02 0.86 16 36 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 1.90 6.77 -2.39 -0.02 1.88 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.13 0.84 8.08 -2.39 -0.02 0.82 16 40 H 0.10 1.55 8.03 -2.39 -0.02 1.53 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.51 7.69 -2.39 -0.02 0.49 16 43 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 45 H 0.09 2.31 8.10 -2.38 -0.02 2.29 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 48 H 0.02 0.75 7.19 -2.39 -0.02 0.73 16 49 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 50 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 51 H 0.04 1.82 3.38 -2.39 -0.01 1.81 16 52 H 0.07 2.52 8.10 -2.38 -0.02 2.50 16 53 H 0.04 1.42 8.06 -2.39 -0.02 1.40 16 54 H 0.11 0.87 7.78 -2.39 -0.02 0.85 16 55 H 0.05 0.65 7.93 -2.38 -0.02 0.63 16 Total: -1.00 -73.16 414.92 0.98 -72.18 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.77 Total: 14.01 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 8.18 Total: -8.47 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -9.64 Total: -124.84 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -73.16 0.98 -72.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460536488.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.566 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds