Wall clock time and date at job start Wed Apr 1 2020 04:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47238 * 2 1 4 4 C 1.50704 * 109.47032 * 120.00123 * 2 1 3 5 5 H 1.08000 * 119.99929 * 119.99950 * 4 2 1 6 6 C 1.37874 * 119.99865 * 299.99903 * 4 2 1 7 7 N 1.31517 * 120.00204 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99950 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46940 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47134 * 119.99634 * 8 6 4 11 11 H 1.48498 * 109.46856 * 240.00058 * 8 6 4 12 12 N 1.46902 * 109.46728 * 240.00061 * 2 1 3 13 13 C 1.46900 * 111.00201 * 306.04398 * 12 2 1 14 14 C 1.38574 * 111.00236 * 70.00271 * 12 2 1 15 15 N 1.31224 * 126.47311 * 358.59128 * 14 12 2 16 16 N 1.28526 * 109.85854 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05504 * 0.02562 * 16 15 14 18 18 C 1.50705 * 126.34496 * 179.97438 * 17 16 15 19 19 C 1.53003 * 117.50006 * 6.67022 * 18 17 16 20 20 C 1.53004 * 117.49409 * 298.00951 * 18 17 16 21 21 N 1.36451 * 126.47496 * 178.28325 * 14 12 2 22 22 C 1.46508 * 127.13557 * 0.03273 * 21 14 12 23 23 C 1.52994 * 109.47028 * 80.99570 * 22 21 14 24 24 H 1.08999 * 109.47196 * 311.72787 * 23 22 21 25 25 C 1.52997 * 109.47205 * 191.72504 * 23 22 21 26 26 C 1.52993 * 117.49974 * 243.34247 * 25 23 22 27 27 C 1.53000 * 117.49674 * 174.68330 * 25 23 22 28 28 N 1.46906 * 109.47212 * 71.72388 * 23 22 21 29 29 C 1.46901 * 111.00173 * 282.46693 * 28 23 22 30 30 C 1.46900 * 110.99688 * 46.42267 * 28 23 22 31 31 H 1.08995 * 109.47080 * 299.99971 * 1 2 3 32 32 H 1.08999 * 109.47107 * 59.99562 * 1 2 3 33 33 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99698 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47419 * 202.55192 * 13 12 2 36 36 H 1.09007 * 109.46860 * 322.55218 * 13 12 2 37 37 H 1.09002 * 109.46933 * 82.55135 * 13 12 2 38 38 H 1.09001 * 115.55081 * 152.34262 * 18 17 16 39 39 H 1.09003 * 117.49539 * 359.97438 * 19 18 17 40 40 H 1.08997 * 117.50087 * 145.02410 * 19 18 17 41 41 H 1.08998 * 117.49508 * 214.98085 * 20 18 17 42 42 H 1.08993 * 117.50086 * 359.97438 * 20 18 17 43 43 H 1.09001 * 109.46582 * 200.99522 * 22 21 14 44 44 H 1.08995 * 109.46606 * 320.99344 * 22 21 14 45 45 H 1.08995 * 115.54821 * 29.01708 * 25 23 22 46 46 H 1.09004 * 117.49982 * 0.02562 * 26 25 23 47 47 H 1.09001 * 117.49880 * 145.01969 * 26 25 23 48 48 H 1.09002 * 117.49575 * 214.97892 * 27 25 23 49 49 H 1.09000 * 117.50450 * 359.97438 * 27 25 23 50 50 H 1.09005 * 109.46979 * 66.60762 * 29 28 23 51 51 H 1.08997 * 109.46851 * 186.60178 * 29 28 23 52 52 H 1.09002 * 109.46886 * 306.60877 * 29 28 23 53 53 H 1.08997 * 109.47408 * 62.22569 * 30 28 23 54 54 H 1.09002 * 109.46972 * 182.23104 * 30 28 23 55 55 H 1.09007 * 109.46683 * 302.22907 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1677 -1.5866 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0355 -1.3079 14 6 1.7680 0.0525 -2.3405 15 7 1.1533 1.2105 -2.3963 16 7 1.0949 1.6156 -3.6146 17 6 1.6637 0.7471 -4.4020 18 6 1.8009 0.8542 -5.8990 19 6 1.3631 2.1645 -6.5566 20 6 0.5137 0.9020 -6.7247 21 7 2.1178 -0.2767 -3.6177 22 6 2.8291 -1.4796 -4.0578 23 6 1.8432 -2.6447 -4.1642 24 1 1.2408 -2.6949 -3.2572 25 6 2.6170 -3.9535 -4.3355 26 6 2.4160 -4.7274 -5.6398 27 6 1.8124 -5.2549 -4.3358 28 7 0.9656 -2.4393 -5.3242 29 6 -0.0771 -1.4482 -5.0265 30 6 1.7415 -2.0477 -6.5085 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 0.7090 1.1613 3.4844 35 1 2.0739 -2.6616 -1.9300 36 1 1.3498 -2.4762 -0.3144 37 1 0.4447 -1.9651 -1.7595 38 1 2.6570 0.3358 -6.3308 39 1 0.9753 2.9488 -5.9066 40 1 1.9308 2.5079 -7.4214 41 1 0.5232 0.4155 -7.7000 42 1 -0.4322 0.8556 -6.1853 43 1 3.2827 -1.2973 -5.0321 44 1 3.6069 -1.7265 -3.3353 45 1 3.6092 -3.9753 -3.8850 46 1 1.7328 -4.3039 -6.3762 47 1 3.2761 -5.2587 -6.0474 48 1 2.2757 -6.1330 -3.8860 49 1 0.7320 -5.1788 -4.2136 50 1 0.3819 -0.4699 -4.8830 51 1 -0.7811 -1.4008 -5.8573 52 1 -0.6055 -1.7383 -4.1184 53 1 2.4321 -2.8489 -6.7716 54 1 1.0639 -1.8636 -7.3422 55 1 2.3042 -1.1400 -6.2903 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509952010.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:47 Heat of formation + Delta-G solvation = 194.249539 kcal Electronic energy + Delta-G solvation = -34272.880791 eV Core-core repulsion = 30350.583149 eV Total energy + Delta-G solvation = -3922.297642 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.27495 -40.47578 -39.36621 -38.07266 -36.58188 -35.33692 -34.68395 -31.22133 -30.95719 -30.47366 -28.85330 -27.34091 -27.06008 -26.20304 -25.14941 -23.86264 -23.34363 -23.05989 -22.71361 -21.31483 -20.87013 -20.39739 -18.63263 -18.09447 -17.75051 -17.30008 -17.14321 -16.92910 -16.38948 -16.29418 -15.60863 -15.51447 -15.40774 -15.17520 -14.80770 -14.47643 -14.29109 -13.92226 -13.85817 -13.52314 -13.40030 -13.11752 -13.01935 -12.85148 -12.78829 -12.63499 -12.55455 -12.42244 -12.39211 -12.27788 -12.11154 -12.03184 -11.92598 -11.85011 -11.72438 -11.48528 -11.35665 -11.23212 -11.00413 -10.97018 -10.72242 -10.53642 -10.42273 -9.12987 -8.96188 -8.14293 -6.29330 0.77710 1.25127 1.43194 1.44564 1.56779 1.83229 2.40239 2.82033 2.89813 2.94433 3.06667 3.15344 3.25520 3.51026 3.64539 3.79542 3.83916 3.93550 4.00207 4.04428 4.14047 4.23537 4.28269 4.30723 4.34699 4.38384 4.44620 4.56497 4.60249 4.64113 4.71327 4.75685 4.77649 4.82860 4.90839 4.94940 4.95878 4.99021 5.02408 5.04564 5.05834 5.13338 5.15428 5.18247 5.29524 5.35375 5.41660 5.51550 5.54756 5.60917 5.83396 5.97927 6.04862 6.10794 6.17561 6.54669 6.80135 7.39621 7.87455 8.92686 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004087 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.303953 B = 6850.103024 C = 8615.318245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.242 3.758 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.453 5.453 13 C 0.036 3.964 14 C 0.370 3.630 15 N -0.366 5.366 16 N -0.328 5.328 17 C 0.210 3.790 18 C -0.098 4.098 19 C -0.150 4.150 20 C -0.140 4.140 21 N -0.477 5.477 22 C 0.072 3.928 23 C 0.083 3.917 24 H 0.084 0.916 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.172 4.172 28 N -0.521 5.521 29 C 0.001 3.999 30 C -0.015 4.015 31 H 0.063 0.937 32 H 0.023 0.977 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.021 0.979 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.081 0.919 50 H 0.055 0.945 51 H 0.081 0.919 52 H 0.024 0.976 53 H 0.095 0.905 54 H 0.083 0.917 55 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -11.021 -24.457 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.136 3.864 3 H 0.022 0.978 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.176 5.176 13 C -0.110 4.110 14 C 0.013 3.987 15 N -0.210 5.210 16 N -0.167 5.167 17 C -0.057 4.057 18 C -0.118 4.118 19 C -0.188 4.188 20 C -0.178 4.178 21 N -0.173 5.173 22 C -0.051 4.051 23 C -0.027 4.027 24 H 0.102 0.898 25 C -0.176 4.176 26 C -0.192 4.192 27 C -0.209 4.209 28 N -0.243 5.243 29 C -0.147 4.147 30 C -0.162 4.162 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.099 0.901 43 H 0.148 0.852 44 H 0.114 0.886 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.100 0.900 52 H 0.043 0.957 53 H 0.113 0.887 54 H 0.102 0.898 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.372 -10.178 -23.870 26.168 hybrid contribution 0.253 -0.020 1.587 1.607 sum 3.625 -10.198 -22.283 24.772 Atomic orbital electron populations 1.22110 0.99277 0.98751 1.00437 1.18953 0.90713 0.92617 0.84118 0.97768 1.21307 1.31704 1.13085 0.90021 0.91204 1.25778 0.95058 0.95649 1.02139 1.70089 1.37353 1.24084 1.24240 0.85338 0.78078 0.78604 0.78590 1.18330 1.20984 1.20532 1.59121 1.55910 1.03796 0.98759 1.22775 0.96453 0.87782 1.04013 1.23091 0.96281 0.94302 0.85076 1.74738 1.21370 1.11998 1.12905 1.73826 1.21022 1.25299 0.96508 1.23961 0.99866 0.85942 0.95922 1.20621 1.02664 1.06786 0.81745 1.23160 1.02694 0.90688 1.02208 1.23292 0.92629 1.00902 1.01007 1.46314 1.46317 1.19668 1.05028 1.22975 0.95993 0.82426 1.03696 1.22050 0.93081 0.92233 0.95332 0.89811 1.22100 1.00042 0.90327 1.05112 1.23233 1.03397 1.01714 0.90903 1.22873 0.99285 0.96173 1.02574 1.62253 1.13042 1.44924 1.04130 1.23004 0.95557 0.95674 1.00496 1.23277 0.99195 1.01267 0.92439 0.91798 0.95825 0.95030 0.92805 0.88551 0.89720 0.96031 0.82997 0.90069 0.84827 0.84339 0.90111 0.85246 0.88590 0.86612 0.86607 0.87867 0.88337 0.90007 0.92740 0.90014 0.95742 0.88676 0.89785 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.85 8.28 71.98 0.60 -7.25 16 2 C 0.24 13.07 1.99 44.17 0.09 13.16 16 3 H 0.00 0.28 7.77 -2.39 -0.02 0.26 16 4 C -0.52 -28.75 7.65 25.60 0.20 -28.55 16 5 H 0.07 3.68 7.36 -2.91 -0.02 3.66 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.56 11.32 21.45 0.24 -54.31 16 8 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 N -0.45 -20.29 4.76 -710.97 -3.38 -23.67 16 13 C 0.04 1.35 6.41 127.69 0.82 2.17 16 14 C 0.37 15.85 6.62 260.11 1.72 17.57 16 15 N -0.37 -17.82 9.58 -58.01 -0.56 -18.38 16 16 N -0.33 -13.75 11.78 -49.54 -0.58 -14.33 16 17 C 0.21 6.60 4.96 137.64 0.68 7.28 16 18 C -0.10 -1.90 3.71 -11.54 -0.04 -1.94 16 19 C -0.15 -2.61 10.15 30.62 0.31 -2.30 16 20 C -0.14 -2.14 7.76 30.62 0.24 -1.90 16 21 N -0.48 -15.25 2.07 -514.85 -1.07 -16.31 16 22 C 0.07 1.63 4.49 86.38 0.39 2.02 16 23 C 0.08 1.71 1.47 44.91 0.07 1.78 16 24 H 0.08 2.26 3.65 -2.39 -0.01 2.25 16 25 C -0.16 -2.51 5.54 -10.80 -0.06 -2.57 16 26 C -0.16 -1.95 8.36 30.62 0.26 -1.70 16 27 C -0.17 -2.76 10.23 30.62 0.31 -2.45 16 28 N -0.52 -9.60 4.02 -923.26 -3.71 -13.31 16 29 C 0.00 0.03 7.59 127.69 0.97 1.00 16 30 C -0.02 -0.18 6.88 127.69 0.88 0.70 16 31 H 0.06 3.77 6.07 -2.39 -0.01 3.76 16 32 H 0.02 1.25 6.29 -2.39 -0.02 1.23 16 33 H 0.03 1.56 6.77 -2.39 -0.02 1.55 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.10 2.90 5.04 -2.38 -0.01 2.89 16 36 H 0.08 3.37 6.49 -2.38 -0.02 3.36 16 37 H 0.02 0.81 6.72 -2.39 -0.02 0.80 16 38 H 0.15 2.04 5.82 -2.39 -0.01 2.03 16 39 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.14 1.12 8.03 -2.39 -0.02 1.11 16 42 H 0.08 1.64 7.15 -2.39 -0.02 1.62 16 43 H 0.13 2.14 5.13 -2.39 -0.01 2.12 16 44 H 0.10 2.27 7.84 -2.39 -0.02 2.26 16 45 H 0.12 1.70 7.98 -2.39 -0.02 1.68 16 46 H 0.12 1.49 5.27 -2.38 -0.01 1.47 16 47 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.05 1.43 1.38 -2.38 0.00 1.42 16 51 H 0.08 1.64 7.89 -2.39 -0.02 1.62 16 52 H 0.02 0.72 7.93 -2.39 -0.02 0.70 16 53 H 0.09 0.88 5.23 -2.39 -0.01 0.87 16 54 H 0.08 0.79 7.97 -2.39 -0.02 0.77 16 55 H 0.04 0.54 1.71 -2.38 0.00 0.53 16 Total: -1.00 -73.03 386.08 1.77 -71.26 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.93 Total: 25.42 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 7.87 Total: -1.83 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -9.06 Total: -140.32 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -73.03 1.77 -71.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509952010.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 265.514 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds