Wall clock time and date at job start Wed Apr 1 2020 04:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47673 * 2 1 4 4 C 1.50698 * 109.47168 * 120.00235 * 2 1 3 5 5 H 1.07998 * 120.00439 * 119.99532 * 4 2 1 6 6 C 1.37887 * 119.99953 * 299.99797 * 4 2 1 7 7 N 1.31516 * 119.99689 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00075 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46949 * 89.99926 * 8 6 4 10 10 H 1.48497 * 109.46929 * 209.99474 * 8 6 4 11 11 H 1.48492 * 109.47395 * 330.00084 * 8 6 4 12 12 N 1.46908 * 109.47017 * 239.99789 * 2 1 3 13 13 C 1.46897 * 110.99782 * 306.04842 * 12 2 1 14 14 C 1.38576 * 110.99677 * 70.00387 * 12 2 1 15 15 N 1.31218 * 126.47613 * 341.08389 * 14 12 2 16 16 N 1.28530 * 109.85898 * 180.02562 * 15 14 12 17 17 C 1.30286 * 110.05244 * 359.71886 * 16 15 14 18 18 C 1.50704 * 126.34600 * 180.31107 * 17 16 15 19 19 C 1.53002 * 117.49837 * 8.77782 * 18 17 16 20 20 C 1.53003 * 117.49831 * 300.15560 * 18 17 16 21 21 N 1.36457 * 126.47170 * 161.13323 * 14 12 2 22 22 C 1.46498 * 127.13546 * 359.95765 * 21 14 12 23 23 C 1.52998 * 109.47335 * 276.64660 * 22 21 14 24 24 H 1.09002 * 109.47457 * 53.16314 * 23 22 21 25 25 C 1.53003 * 109.47182 * 173.15896 * 23 22 21 26 26 C 1.53002 * 117.49921 * 186.95772 * 25 23 22 27 27 C 1.52995 * 60.03420 * 107.50017 * 26 25 23 28 28 N 1.46897 * 109.47183 * 293.16142 * 23 22 21 29 29 C 1.46903 * 111.00022 * 154.41731 * 28 23 22 30 30 C 1.46903 * 110.99828 * 278.36620 * 28 23 22 31 31 H 1.08997 * 109.47020 * 59.99884 * 1 2 3 32 32 H 1.08996 * 109.47344 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46566 * 300.00358 * 1 2 3 34 34 H 0.96997 * 120.00240 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.47026 * 188.42299 * 13 12 2 36 36 H 1.09002 * 109.47198 * 308.42478 * 13 12 2 37 37 H 1.09001 * 109.47225 * 68.42804 * 13 12 2 38 38 H 1.09000 * 115.55145 * 154.48494 * 18 17 16 39 39 H 1.08998 * 117.49809 * 359.97438 * 19 18 17 40 40 H 1.08998 * 117.50023 * 145.02158 * 19 18 17 41 41 H 1.09002 * 117.49864 * 214.97731 * 20 18 17 42 42 H 1.08993 * 117.49782 * 359.97438 * 20 18 17 43 43 H 1.08999 * 109.47195 * 156.64299 * 22 21 14 44 44 H 1.09010 * 109.47187 * 36.64781 * 22 21 14 45 45 H 1.08996 * 115.55165 * 41.28575 * 25 23 22 46 46 H 1.09005 * 117.50020 * 215.00289 * 26 25 23 47 47 H 1.09000 * 117.49861 * 359.97438 * 26 25 23 48 48 H 1.08999 * 117.49793 * 107.49636 * 27 26 25 49 49 H 1.08996 * 117.50522 * 252.52615 * 27 26 25 50 50 H 1.08997 * 109.47431 * 68.55747 * 29 28 23 51 51 H 1.09000 * 109.46767 * 188.56160 * 29 28 23 52 52 H 1.09003 * 109.46710 * 308.55196 * 29 28 23 53 53 H 1.08999 * 109.47081 * 58.53261 * 30 28 23 54 54 H 1.08995 * 109.47012 * 178.53131 * 30 28 23 55 55 H 1.09002 * 109.47113 * 298.53499 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0197 -0.6926 -1.1995 13 6 1.4342 -2.0355 -1.3078 14 6 1.7681 0.0525 -2.3405 15 7 0.8975 1.0270 -2.4596 16 7 0.9274 1.4954 -3.6562 17 6 1.8157 0.8569 -4.3638 18 6 2.1572 1.1115 -5.8093 19 6 1.5502 2.3504 -6.4710 20 6 1.0353 0.9571 -6.8381 21 7 2.3782 -0.0894 -3.5528 22 6 3.4240 -1.0513 -3.9094 23 6 4.7877 -0.5033 -3.4839 24 1 4.7560 -0.2284 -2.4296 25 6 5.8580 -1.5752 -3.6994 26 6 7.2673 -1.2805 -3.1819 27 6 6.3876 -2.3045 -2.4621 28 7 5.1122 0.6816 -4.2893 29 6 6.0370 1.5689 -3.5714 30 6 5.6609 0.2956 -5.5962 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 0.7095 1.1619 3.4844 35 1 1.9226 -2.5807 -2.1155 36 1 1.5774 -2.5711 -0.3693 37 1 0.3682 -1.9512 -1.5191 38 1 3.1625 0.8198 -6.1133 39 1 0.9035 2.9809 -5.8609 40 1 2.1561 2.8740 -7.2104 41 1 1.3026 0.5642 -7.8191 42 1 0.0503 0.6709 -6.4695 43 1 3.4174 -1.2123 -4.9874 44 1 3.2373 -1.9967 -3.3997 45 1 5.7704 -2.1481 -4.6225 46 1 8.1070 -1.6594 -3.7646 47 1 7.4321 -0.3227 -2.6883 48 1 6.6483 -3.3572 -2.5713 49 1 5.9731 -2.0206 -1.4948 50 1 7.0108 1.0868 -3.4863 51 1 6.1417 2.5050 -4.1200 52 1 5.6445 1.7736 -2.5753 53 1 4.9376 -0.3252 -6.1249 54 1 5.8680 1.1911 -6.1820 55 1 6.5840 -0.2655 -5.4513 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509952014.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:50 Heat of formation + Delta-G solvation = 149.994482 kcal Electronic energy + Delta-G solvation = -33477.994550 eV Core-core repulsion = 29553.777865 eV Total energy + Delta-G solvation = -3924.216686 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.82977 -40.31713 -39.10739 -37.79056 -36.37322 -35.64997 -34.71908 -31.10487 -30.77414 -30.18369 -28.55193 -27.29644 -27.11307 -25.70808 -24.72926 -23.78907 -23.34808 -23.18594 -22.98294 -21.18413 -20.78206 -20.52823 -18.38210 -17.95253 -17.42124 -17.18910 -16.89517 -16.70181 -16.45551 -16.16545 -15.67770 -15.58382 -15.31024 -15.24389 -14.85140 -14.37019 -14.25684 -13.82996 -13.46473 -13.42018 -13.36929 -13.13339 -12.99594 -12.92986 -12.73585 -12.63498 -12.59033 -12.38400 -12.32848 -12.30434 -12.18782 -12.10644 -11.98220 -11.95705 -11.75636 -11.44083 -11.42477 -11.27414 -11.14804 -10.84912 -10.74706 -10.49626 -10.11900 -9.15341 -8.99223 -8.11071 -6.26101 0.93515 1.41593 1.44350 1.47413 1.55614 1.97298 2.41812 2.70040 3.05622 3.06973 3.09978 3.18229 3.40262 3.63560 3.73946 3.85426 3.98334 4.04638 4.07855 4.09696 4.15490 4.23597 4.28053 4.33395 4.40052 4.47538 4.53490 4.56367 4.64751 4.70323 4.74300 4.76641 4.85524 4.85675 4.90486 4.97252 4.99859 5.01902 5.03352 5.10218 5.13289 5.16971 5.22982 5.25678 5.28165 5.32622 5.37966 5.50107 5.64873 5.68652 5.92816 6.01652 6.13408 6.19928 6.24888 6.68857 6.83918 7.42656 8.00368 8.95509 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.004297 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.518496 B = 6515.040328 C = 8434.697700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.247 3.753 3 H -0.009 1.009 4 C -0.518 4.518 5 H 0.070 0.930 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.455 5.455 13 C 0.043 3.957 14 C 0.357 3.643 15 N -0.365 5.365 16 N -0.344 5.344 17 C 0.227 3.773 18 C -0.080 4.080 19 C -0.151 4.151 20 C -0.148 4.148 21 N -0.457 5.457 22 C 0.126 3.874 23 C 0.107 3.893 24 H 0.050 0.950 25 C -0.168 4.168 26 C -0.172 4.172 27 C -0.178 4.178 28 N -0.544 5.544 29 C 0.026 3.974 30 C 0.019 3.981 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.261 0.739 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.133 0.867 46 H 0.115 0.885 47 H 0.084 0.916 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.050 0.950 51 H 0.074 0.926 52 H 0.030 0.970 53 H 0.079 0.921 54 H 0.074 0.926 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.953 -7.393 -22.527 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.141 3.859 3 H 0.009 0.991 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.183 1.183 12 N -0.179 5.179 13 C -0.104 4.104 14 C -0.001 4.001 15 N -0.208 5.208 16 N -0.183 5.183 17 C -0.041 4.041 18 C -0.100 4.100 19 C -0.189 4.189 20 C -0.186 4.186 21 N -0.150 5.150 22 C 0.003 3.997 23 C -0.003 4.003 24 H 0.069 0.931 25 C -0.188 4.188 26 C -0.209 4.209 27 C -0.216 4.216 28 N -0.267 5.267 29 C -0.122 4.122 30 C -0.129 4.129 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.039 0.961 38 H 0.167 0.833 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.151 0.849 46 H 0.133 0.867 47 H 0.102 0.898 48 H 0.130 0.870 49 H 0.092 0.908 50 H 0.068 0.932 51 H 0.093 0.907 52 H 0.049 0.951 53 H 0.098 0.902 54 H 0.092 0.908 55 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.859 -6.097 -22.031 25.752 hybrid contribution 0.804 -0.925 1.683 2.082 sum 12.663 -7.022 -20.348 24.974 Atomic orbital electron populations 1.22253 0.99346 0.98933 1.01035 1.18834 0.90805 0.91777 0.84508 0.99124 1.21286 1.31421 1.12954 0.90024 0.91206 1.25790 0.95128 0.95704 1.02152 1.70099 1.37482 1.24258 1.24144 0.85412 0.77700 0.79332 0.78306 1.20421 1.21180 1.18277 1.59234 1.56945 1.03413 0.98282 1.22354 0.96572 0.87829 1.03680 1.22942 0.92770 0.97534 0.86807 1.74651 1.20234 1.13777 1.12121 1.73787 1.20660 1.24902 0.98942 1.24169 0.94453 0.89632 0.95857 1.20293 1.00316 1.07097 0.82339 1.22991 1.02967 0.90776 1.02158 1.23133 0.96661 0.99708 0.99139 1.46024 1.31316 1.29142 1.08473 1.22086 0.84103 0.90074 1.03393 1.21483 0.92432 0.89542 0.96814 0.93117 1.22708 0.94886 1.01376 0.99803 1.23081 0.93534 1.00347 1.03904 1.23009 1.04018 0.98724 0.95819 1.62161 1.44439 1.15431 1.04660 1.22443 0.94844 0.97303 0.97584 1.22555 0.99311 1.01586 0.89408 0.94134 0.95104 0.92377 0.92940 0.89946 0.89479 0.96140 0.83251 0.90419 0.85234 0.84484 0.90550 0.85968 0.88249 0.84908 0.86722 0.89766 0.86960 0.90774 0.93210 0.90729 0.95126 0.90249 0.90754 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.59 8.19 71.98 0.59 -8.00 16 2 C 0.25 13.53 2.04 44.17 0.09 13.62 16 3 H -0.01 -0.60 8.03 -2.39 -0.02 -0.62 16 4 C -0.52 -28.71 7.85 25.60 0.20 -28.51 16 5 H 0.07 3.68 7.16 -2.91 -0.02 3.66 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -55.50 11.32 21.45 0.24 -55.26 16 8 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 N -0.45 -20.47 4.73 -710.99 -3.37 -23.84 16 13 C 0.04 1.62 8.53 127.69 1.09 2.70 16 14 C 0.36 15.66 6.64 260.11 1.73 17.39 16 15 N -0.36 -18.22 9.25 -58.00 -0.54 -18.76 16 16 N -0.34 -15.19 11.79 -49.54 -0.58 -15.77 16 17 C 0.23 7.71 7.59 137.64 1.04 8.75 16 18 C -0.08 -1.78 5.80 -11.54 -0.07 -1.85 16 19 C -0.15 -3.07 10.15 30.60 0.31 -2.76 16 20 C -0.15 -2.65 10.23 30.60 0.31 -2.34 16 21 N -0.46 -15.26 2.76 -514.86 -1.42 -16.68 16 22 C 0.13 2.89 5.61 86.38 0.48 3.37 16 23 C 0.11 2.41 2.17 44.92 0.10 2.51 16 24 H 0.05 1.66 7.47 -2.39 -0.02 1.64 16 25 C -0.17 -2.66 3.31 -10.77 -0.04 -2.69 16 26 C -0.17 -2.69 8.68 30.59 0.27 -2.42 16 27 C -0.18 -3.24 10.18 30.62 0.31 -2.93 16 28 N -0.54 -11.14 4.61 -923.27 -4.26 -15.39 16 29 C 0.03 0.58 9.12 127.69 1.17 1.75 16 30 C 0.02 0.23 7.75 127.69 0.99 1.22 16 31 H 0.04 2.24 5.73 -2.39 -0.01 2.23 16 32 H 0.03 1.57 6.52 -2.39 -0.02 1.55 16 33 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.08 2.44 6.38 -2.38 -0.02 2.42 16 36 H 0.09 3.38 6.67 -2.39 -0.02 3.36 16 37 H 0.02 0.80 6.72 -2.39 -0.02 0.79 16 38 H 0.15 2.52 5.97 -2.39 -0.01 2.50 16 39 H 0.08 2.09 7.92 -2.39 -0.02 2.07 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.12 1.94 6.56 -2.39 -0.02 1.93 16 44 H 0.10 2.22 6.34 -2.38 -0.02 2.21 16 45 H 0.13 1.44 7.87 -2.39 -0.02 1.42 16 46 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.08 1.58 5.82 -2.39 -0.01 1.56 16 48 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 49 H 0.07 1.80 8.10 -2.39 -0.02 1.79 16 50 H 0.05 0.92 5.23 -2.39 -0.01 0.91 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.03 0.88 7.83 -2.39 -0.02 0.86 16 53 H 0.08 0.73 6.35 -2.39 -0.02 0.71 16 54 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 55 H 0.05 0.50 6.16 -2.39 -0.01 0.49 16 Total: -1.00 -75.86 414.69 2.02 -73.85 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.89 Total: 25.14 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 9.02 Total: 0.90 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -9.92 Total: -145.70 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.86 2.02 -73.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509952014.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.842 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds