Wall clock time and date at job start Wed Apr 1 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.47093 * 2 1 4 4 C 1.46897 * 111.00136 * 164.93615 * 3 2 1 5 5 C 1.53000 * 109.47267 * 293.95496 * 4 3 2 6 6 N 1.46499 * 109.47246 * 179.97438 * 5 4 3 7 7 C 1.36736 * 127.13991 * 274.76124 * 6 5 4 8 8 C 1.50697 * 126.34996 * 0.05357 * 7 6 5 9 9 N 1.30298 * 107.30816 * 180.02562 * 7 6 5 10 10 N 1.28529 * 110.04987 * 359.72651 * 9 7 6 11 11 C 1.31218 * 109.86106 * 0.45541 * 10 9 7 12 12 N 1.38576 * 126.47581 * 179.82236 * 11 10 9 13 13 C 1.46850 * 110.99915 * 27.77202 * 12 11 10 14 14 C 1.53033 * 109.52686 * 174.16593 * 13 12 11 15 15 C 1.53122 * 109.28353 * 59.17300 * 14 13 12 16 16 C 1.50692 * 109.52591 * 182.44554 * 15 14 13 17 17 H 1.08001 * 119.99814 * 119.68358 * 16 15 14 18 18 C 1.37882 * 119.99891 * 299.68590 * 16 15 14 19 19 N 1.31511 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99797 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47095 * 89.99647 * 20 18 16 22 22 H 1.48504 * 109.46850 * 209.99754 * 20 18 16 23 23 H 1.48494 * 109.47062 * 329.99579 * 20 18 16 24 24 C 1.53120 * 109.15753 * 302.35288 * 15 14 13 25 25 C 1.46847 * 111.00184 * 263.56032 * 12 11 10 26 26 C 1.46904 * 110.99698 * 288.89315 * 3 2 1 27 27 C 1.52998 * 117.49417 * 240.36379 * 26 3 2 28 28 C 1.52993 * 60.00252 * 252.51381 * 27 26 3 29 29 H 1.09005 * 109.46725 * 305.54242 * 1 2 3 30 30 H 1.08991 * 109.47095 * 65.54264 * 1 2 3 31 31 H 1.08997 * 109.46469 * 185.54481 * 1 2 3 32 32 H 1.09002 * 109.47071 * 239.99705 * 2 1 3 33 33 H 1.09000 * 109.47259 * 119.99786 * 2 1 3 34 34 H 1.08997 * 109.47263 * 173.95348 * 4 3 2 35 35 H 1.09010 * 109.46684 * 53.95316 * 4 3 2 36 36 H 1.09008 * 109.46853 * 60.00125 * 5 4 3 37 37 H 1.08998 * 109.47303 * 299.99967 * 5 4 3 38 38 H 1.09001 * 109.47249 * 89.99482 * 8 7 6 39 39 H 1.09002 * 109.47770 * 210.00241 * 8 7 6 40 40 H 1.09001 * 109.46900 * 330.00577 * 8 7 6 41 41 H 1.09005 * 109.45946 * 294.17840 * 13 12 11 42 42 H 1.08995 * 109.46742 * 54.14206 * 13 12 11 43 43 H 1.08997 * 109.50806 * 179.12023 * 14 13 12 44 44 H 1.09005 * 109.49873 * 299.23181 * 14 13 12 45 45 H 1.08998 * 109.51630 * 62.24855 * 15 14 13 46 46 H 0.97003 * 119.99462 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.50673 * 297.70747 * 24 15 14 48 48 H 1.09006 * 109.50194 * 177.59020 * 24 15 14 49 49 H 1.08994 * 109.46057 * 305.85782 * 25 12 11 50 50 H 1.09003 * 109.45914 * 65.82297 * 25 12 11 51 51 H 1.08993 * 115.54992 * 26.07612 * 26 3 2 52 52 H 1.08999 * 117.50400 * 0.02562 * 27 26 3 53 53 H 1.09001 * 117.49707 * 145.02310 * 27 26 3 54 54 H 1.09002 * 117.50112 * 252.51734 * 28 27 26 55 55 H 1.08998 * 117.51941 * 107.48182 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4437 1.4400 0.3564 5 6 3.6240 0.9902 1.8077 6 7 5.0442 1.0444 2.1629 7 6 5.9868 0.0778 1.9465 8 6 5.7605 -1.2593 1.2893 9 7 7.1173 0.5273 2.4132 10 7 6.9554 1.7054 2.9008 11 6 5.7007 2.0698 2.7790 12 7 5.1479 3.2713 3.1925 13 6 6.1525 4.3425 3.1865 14 6 5.4778 5.6783 3.5064 15 6 4.8071 5.5898 4.8801 16 6 4.0901 6.8821 5.1746 17 1 3.0231 6.8818 5.3413 18 6 4.7964 8.0650 5.2312 19 7 6.0958 8.0652 5.0286 20 14 3.9078 9.6668 5.5971 21 1 3.8869 9.8975 7.0639 22 1 4.6152 10.7890 4.9295 23 1 2.5148 9.5874 5.0886 24 6 3.8005 4.4360 4.8744 25 6 4.5238 3.1361 4.5149 26 6 1.7765 2.0293 -1.2976 27 6 2.9941 2.5319 -2.0760 28 6 2.0507 3.5309 -1.4031 29 1 -0.3633 0.5974 0.8362 30 1 -0.3633 0.4254 -0.9354 31 1 -0.3632 -1.0229 0.0993 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8071 2.4615 0.2449 35 1 4.0087 0.7795 -0.3015 36 1 3.2607 -0.0315 1.9192 37 1 3.0591 1.6505 2.4656 38 1 5.9199 -1.1678 0.2149 39 1 6.4589 -1.9888 1.6995 40 1 4.7387 -1.5886 1.4781 41 1 6.9135 4.1309 3.9377 42 1 6.6189 4.3975 2.2029 43 1 6.2262 6.4707 3.5172 44 1 4.7263 5.8972 2.7478 45 1 5.5636 5.4095 5.6437 46 1 6.5928 8.8973 5.0688 47 1 3.0225 4.6353 4.1374 48 1 3.3506 4.3407 5.8627 49 1 3.8074 2.3150 4.4960 50 1 5.2925 2.9303 5.2599 51 1 0.9416 1.6285 -1.8723 52 1 3.9755 2.3841 -1.6255 53 1 2.9604 2.4616 -3.1632 54 1 1.3963 4.1178 -2.0476 55 1 2.4110 4.0407 -0.5096 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515711070.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:10 Heat of formation + Delta-G solvation = 102.030084 kcal Electronic energy + Delta-G solvation = -32385.931177 eV Core-core repulsion = 28459.634599 eV Total energy + Delta-G solvation = -3926.296578 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.06938 -40.17517 -39.96552 -36.70613 -35.94197 -35.17283 -33.66990 -32.32285 -31.84008 -31.54458 -29.02515 -28.43693 -27.33196 -24.94905 -24.31179 -23.97841 -23.80865 -23.22401 -22.20059 -21.67080 -20.59103 -20.34525 -18.59762 -18.38648 -17.68067 -17.52447 -17.00585 -16.51864 -16.29264 -16.03616 -15.64876 -15.46204 -15.15038 -14.97195 -14.64278 -14.56206 -14.33712 -14.26074 -13.95821 -13.66014 -13.54302 -13.41787 -13.27736 -13.11769 -12.93354 -12.77547 -12.59980 -12.58390 -12.42441 -12.37817 -12.26761 -12.15008 -12.02053 -11.95473 -11.66053 -11.56186 -11.37135 -11.22941 -11.08910 -10.92340 -10.78442 -10.44097 -10.38915 -9.45348 -9.18040 -8.06815 -6.20194 0.66662 1.15590 1.43265 1.44379 1.54260 1.74327 2.45265 2.51183 2.77856 3.03046 3.21040 3.44002 3.52284 3.71301 3.81003 3.86654 3.96491 3.99846 4.05434 4.08673 4.11177 4.15871 4.30577 4.37237 4.43878 4.47269 4.50497 4.52236 4.63249 4.67238 4.69591 4.70768 4.74460 4.80732 4.83231 4.88019 4.96234 4.98479 5.02310 5.04410 5.10239 5.15279 5.18766 5.20247 5.21568 5.44586 5.48280 5.59223 5.66127 5.73267 5.92239 5.98226 6.11664 6.12283 6.26474 6.38336 6.91150 7.48110 7.69104 8.98334 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.003283 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.343785 B = 8527.233761 C =10214.023884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.512 5.512 4 C 0.055 3.945 5 C 0.115 3.885 6 N -0.465 5.465 7 C 0.185 3.815 8 C -0.060 4.060 9 N -0.333 5.333 10 N -0.360 5.360 11 C 0.353 3.647 12 N -0.450 5.450 13 C 0.092 3.908 14 C -0.090 4.090 15 C 0.044 3.956 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.953 3.047 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.266 1.266 24 C -0.093 4.093 25 C 0.076 3.924 26 C 0.032 3.968 27 C -0.216 4.216 28 C -0.183 4.183 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.026 0.974 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.040 0.960 45 H -0.010 1.010 46 H 0.260 0.740 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.025 0.975 51 H 0.139 0.861 52 H 0.083 0.917 53 H 0.108 0.892 54 H 0.109 0.891 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 -21.753 -14.607 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.235 5.235 4 C -0.074 4.074 5 C -0.007 4.007 6 N -0.160 5.160 7 C -0.084 4.084 8 C -0.119 4.119 9 N -0.172 5.172 10 N -0.204 5.204 11 C -0.005 4.005 12 N -0.175 5.175 13 C -0.035 4.035 14 C -0.128 4.128 15 C 0.025 3.975 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.131 4.131 25 C -0.050 4.050 26 C -0.077 4.077 27 C -0.254 4.254 28 C -0.221 4.221 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.008 0.992 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.044 0.956 51 H 0.156 0.844 52 H 0.101 0.899 53 H 0.126 0.874 54 H 0.127 0.873 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.047 -21.208 -14.194 27.807 hybrid contribution 0.018 1.121 0.046 1.123 sum -11.029 -20.086 -14.148 26.930 Atomic orbital electron populations 1.21770 0.93945 1.02407 1.02167 1.22326 0.96960 0.86987 1.02028 1.61748 1.14904 1.18646 1.28169 1.22220 0.89720 1.01303 0.94162 1.22045 0.75598 1.05603 0.97486 1.46345 1.11523 1.13547 1.44534 1.25752 0.84489 0.95759 1.02366 1.20467 1.05400 0.85449 1.00544 1.73899 1.23046 1.04471 1.15818 1.74594 1.15282 1.07977 1.22536 1.22697 0.88390 0.89891 0.99522 1.58844 1.31108 0.99126 1.28467 1.21911 0.91411 0.90274 0.99869 1.21465 0.99624 0.93458 0.98264 1.18669 0.93275 0.93067 0.92474 1.21522 0.94525 0.92918 1.47695 0.92448 1.25750 0.95479 1.02286 0.95124 1.70021 1.07605 1.27593 1.50618 0.85631 0.78941 0.79381 0.78154 1.20341 1.21214 1.19015 1.21542 0.98215 0.92540 1.00758 1.22186 0.97320 0.99859 0.85682 1.22719 0.99188 0.95479 0.90307 1.23538 0.95474 1.05968 1.00468 1.23074 1.03525 0.92958 1.02510 0.92759 0.92733 0.90658 0.93249 0.89428 0.92204 0.93013 0.85559 0.88289 0.88147 0.87880 0.87606 0.95549 0.92144 0.91357 0.94139 0.99232 0.93119 0.91714 0.91365 0.89212 0.95625 0.84393 0.89894 0.87401 0.87281 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 71.98 0.71 -0.60 16 2 C 0.04 0.42 5.53 86.30 0.48 0.90 16 3 N -0.51 -7.90 4.67 -870.96 -4.07 -11.96 16 4 C 0.05 0.99 3.91 86.30 0.34 1.32 16 5 C 0.11 2.09 5.94 86.38 0.51 2.60 16 6 N -0.46 -12.06 2.81 -514.85 -1.45 -13.51 16 7 C 0.18 4.64 8.07 137.64 1.11 5.75 16 8 C -0.06 -0.71 10.26 71.23 0.73 0.02 16 9 N -0.33 -11.72 12.18 -49.54 -0.60 -12.32 16 10 N -0.36 -14.55 11.55 -58.01 -0.67 -15.22 16 11 C 0.35 12.47 6.81 260.11 1.77 14.24 16 12 N -0.45 -16.78 4.65 -706.17 -3.28 -20.06 16 13 C 0.09 4.01 4.99 86.32 0.43 4.44 16 14 C -0.09 -4.37 5.12 30.65 0.16 -4.21 16 15 C 0.04 2.20 2.16 -11.46 -0.02 2.17 16 16 C -0.53 -28.88 8.56 25.60 0.22 -28.66 16 17 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 18 C 0.01 0.67 5.31 84.66 0.45 1.12 16 19 N -0.92 -53.73 11.37 21.45 0.24 -53.49 16 20 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.09 -3.71 5.32 30.65 0.16 -3.55 16 25 C 0.08 2.72 5.40 86.32 0.47 3.18 16 26 C 0.03 0.49 5.79 44.91 0.26 0.75 16 27 C -0.22 -3.60 9.50 30.59 0.29 -3.31 16 28 C -0.18 -3.47 10.00 30.59 0.31 -3.17 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.05 0.49 6.90 -2.39 -0.02 0.47 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.40 8.06 -2.39 -0.02 0.38 16 33 H 0.09 0.62 5.96 -2.39 -0.01 0.61 16 34 H 0.06 1.50 6.24 -2.39 -0.01 1.48 16 35 H 0.05 0.83 7.75 -2.38 -0.02 0.82 16 36 H 0.13 1.36 5.55 -2.38 -0.01 1.35 16 37 H 0.10 2.12 7.60 -2.39 -0.02 2.10 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 0.61 7.37 -2.39 -0.02 0.59 16 41 H 0.03 1.24 8.06 -2.38 -0.02 1.22 16 42 H 0.06 2.59 8.10 -2.39 -0.02 2.57 16 43 H 0.07 3.78 6.17 -2.39 -0.01 3.76 16 44 H 0.04 1.96 8.14 -2.38 -0.02 1.95 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 46 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 49 H 0.09 2.63 7.59 -2.39 -0.02 2.61 16 50 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.14 1.59 6.77 -2.39 -0.02 1.57 16 52 H 0.08 1.64 5.88 -2.39 -0.01 1.63 16 53 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 55 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 Total: -1.00 -70.91 422.07 1.43 -69.48 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.86 Total: 18.35 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 8.37 Total: -7.00 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -9.82 Total: -126.56 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.91 1.43 -69.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515711070.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.508 kcal (2) G-P(sol) polarization free energy of solvation -70.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds