Wall clock time and date at job start Wed Apr 1 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36740 * 127.13472 * 2 1 4 4 C 1.50703 * 126.34844 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47222 * 89.99882 * 4 3 2 6 6 C 1.53003 * 109.46916 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47029 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99893 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00020 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99697 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00013 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47164 * 90.00440 * 11 9 7 13 13 H 1.48507 * 109.47297 * 210.00049 * 11 9 7 14 14 H 1.48502 * 109.47607 * 330.00174 * 11 9 7 15 15 N 1.30293 * 107.30371 * 179.97438 * 3 2 1 16 16 N 1.28532 * 110.05421 * 359.72851 * 15 3 2 17 17 C 1.31215 * 109.85697 * 0.45071 * 16 15 3 18 18 N 1.38581 * 126.47059 * 179.82059 * 17 16 15 19 19 C 1.48556 * 110.99795 * 119.81466 * 18 17 16 20 20 C 1.54375 * 104.59344 * 200.95704 * 19 18 17 21 21 C 1.54262 * 105.06151 * 23.85777 * 20 19 18 22 22 H 1.09002 * 110.32521 * 241.10068 * 21 20 19 23 23 N 1.46904 * 110.32272 * 118.99425 * 21 20 19 24 24 C 1.46846 * 110.99655 * 187.04065 * 23 21 20 25 25 C 1.53035 * 109.52257 * 174.16226 * 24 23 21 26 26 C 1.53112 * 109.27914 * 59.17709 * 25 24 23 27 27 C 1.53116 * 109.16270 * 302.34720 * 26 25 24 28 28 C 1.46840 * 110.99913 * 62.83017 * 23 21 20 29 29 C 1.48821 * 110.96858 * 4.39683 * 18 17 16 30 30 H 1.09001 * 109.47007 * 270.02123 * 1 2 3 31 31 H 1.08994 * 109.47581 * 30.02053 * 1 2 3 32 32 H 1.08997 * 109.47044 * 150.02373 * 1 2 3 33 33 H 1.09000 * 109.46803 * 209.99672 * 4 3 2 34 34 H 1.09005 * 109.46814 * 329.99336 * 4 3 2 35 35 H 1.09001 * 109.46538 * 299.99648 * 5 4 3 36 36 H 1.08993 * 109.47350 * 60.00100 * 5 4 3 37 37 H 1.09000 * 109.46825 * 299.99616 * 6 5 4 38 38 H 1.09005 * 109.47098 * 59.99467 * 6 5 4 39 39 H 0.97001 * 119.99374 * 179.97438 * 10 9 7 40 40 H 1.09009 * 110.40917 * 82.18755 * 19 18 17 41 41 H 1.08990 * 110.41815 * 319.74399 * 19 18 17 42 42 H 1.08997 * 110.33138 * 264.96030 * 20 19 18 43 43 H 1.09004 * 110.40992 * 142.79504 * 20 19 18 44 44 H 1.09000 * 109.46268 * 294.17467 * 24 23 21 45 45 H 1.08997 * 109.46630 * 54.14087 * 24 23 21 46 46 H 1.08998 * 109.50487 * 299.23412 * 25 24 23 47 47 H 1.09007 * 109.50425 * 179.11814 * 25 24 23 48 48 H 1.09004 * 109.52492 * 182.43805 * 26 25 24 49 49 H 1.09006 * 109.52551 * 62.25282 * 26 25 24 50 50 H 1.09000 * 109.50465 * 297.71295 * 27 26 25 51 51 H 1.09005 * 109.53563 * 177.61473 * 27 26 25 52 52 H 1.08994 * 109.46682 * 305.85330 * 28 23 21 53 53 H 1.09008 * 109.46542 * 65.82211 * 28 23 21 54 54 H 1.09001 * 110.45345 * 40.32634 * 29 18 17 55 55 H 1.09001 * 110.49959 * 277.79396 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8620 2.5350 0.0005 5 6 1.7175 3.0235 1.4432 6 6 1.2819 4.4903 1.4437 7 6 1.1390 4.9713 2.8646 8 1 1.3384 4.2982 3.6852 9 6 0.7536 6.2709 3.1170 10 7 0.5102 7.0904 2.1176 11 14 0.5757 6.8670 4.8783 12 1 1.8709 7.4230 5.3459 13 1 -0.4674 7.9222 4.9409 14 1 0.1821 5.7298 5.7485 15 7 3.5162 0.6481 0.0006 16 7 3.5212 -0.6372 0.0066 17 6 2.2888 -1.0877 0.0006 18 7 1.8978 -2.4172 0.0008 19 6 1.0794 -2.7313 1.2001 20 6 1.1818 -4.2643 1.3504 21 6 2.4937 -4.6503 0.6367 22 1 2.2883 -5.3249 -0.1945 23 7 3.4244 -5.2781 1.5842 24 6 4.7368 -5.4999 0.9640 25 6 5.7190 -6.0181 2.0170 26 6 5.1846 -7.3263 2.6063 27 6 3.7963 -7.0787 3.2028 28 6 2.8698 -6.5297 2.1155 29 6 3.0762 -3.3189 0.1154 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 2.6119 3.1364 -0.5133 34 1 0.9053 2.6304 -0.5131 35 1 0.9677 2.4220 1.9570 36 1 2.6742 2.9281 1.9567 37 1 2.0315 5.0920 0.9297 38 1 0.3251 4.5853 0.9302 39 1 0.2387 8.0046 2.2952 40 1 0.0429 -2.4333 1.0417 41 1 1.4883 -2.2349 2.0801 42 1 0.3324 -4.7495 0.8696 43 1 1.2283 -4.5407 2.4037 44 1 4.6411 -6.2341 0.1641 45 1 5.1074 -4.5610 0.5525 46 1 5.8259 -5.2784 2.8104 47 1 6.6889 -6.1975 1.5529 48 1 5.8595 -7.6766 3.3874 49 1 5.1145 -8.0782 1.8202 50 1 3.8727 -6.3557 4.0148 51 1 3.3920 -8.0155 3.5864 52 1 1.8844 -6.3389 2.5403 53 1 2.7828 -7.2591 1.3101 54 1 3.7971 -2.9151 0.8263 55 1 3.5423 -3.4637 -0.8592 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519656612.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:05 Heat of formation + Delta-G solvation = 58.730765 kcal Electronic energy + Delta-G solvation = -30951.989791 eV Core-core repulsion = 27023.815613 eV Total energy + Delta-G solvation = -3928.174177 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.07166 -40.90488 -38.92136 -36.79085 -35.92613 -34.90972 -34.14461 -32.33718 -31.79760 -30.55789 -29.29301 -28.41745 -28.36690 -25.60000 -25.11272 -24.35340 -23.19542 -22.56590 -21.71343 -21.69060 -20.89479 -20.55468 -18.67238 -18.39330 -17.70387 -17.45358 -17.06878 -16.54347 -16.23379 -15.91930 -15.64829 -15.57820 -15.27653 -15.02788 -14.74288 -14.42368 -14.36747 -14.32579 -14.09926 -13.94000 -13.76306 -13.65167 -13.35537 -13.21740 -13.06927 -12.74423 -12.67222 -12.59057 -12.43185 -12.37089 -12.30210 -12.10630 -11.98819 -11.67306 -11.57743 -11.48190 -11.44993 -11.26518 -11.21750 -11.20412 -11.16702 -10.76460 -10.53682 -9.42945 -9.28447 -8.19025 -6.28981 0.68560 1.22447 1.40350 1.41672 1.52062 1.72223 2.41659 2.54257 2.97133 3.14368 3.32084 3.37051 3.46925 3.74713 3.89488 3.90049 3.98088 4.01998 4.04322 4.17887 4.20866 4.25289 4.32271 4.36389 4.37055 4.39652 4.49114 4.52569 4.60565 4.63095 4.67111 4.70509 4.74307 4.77316 4.79334 4.92463 4.93934 4.99446 5.01211 5.04876 5.06536 5.08619 5.09292 5.16959 5.23937 5.29466 5.35680 5.45400 5.49221 5.52335 5.74898 5.86161 6.07837 6.13269 6.18179 6.26497 6.86640 7.39538 7.69041 8.92245 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.001940 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.406659 B =14428.437179 C =15030.360258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.477 5.477 3 C 0.195 3.805 4 C -0.022 4.022 5 C -0.083 4.083 6 C 0.027 3.973 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.003 3.997 10 N -0.928 5.928 11 Si 0.960 3.040 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.265 1.265 15 N -0.328 5.328 16 N -0.357 5.357 17 C 0.345 3.655 18 N -0.422 5.422 19 C 0.035 3.965 20 C -0.106 4.106 21 C 0.087 3.913 22 H 0.067 0.933 23 N -0.543 5.543 24 C 0.053 3.947 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.116 4.116 28 C 0.055 3.945 29 C 0.063 3.937 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.038 0.962 37 H -0.004 1.004 38 H 0.008 0.992 39 H 0.264 0.736 40 H 0.111 0.889 41 H 0.037 0.963 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.081 0.919 52 H 0.086 0.914 53 H 0.038 0.962 54 H 0.056 0.944 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -33.567 -3.170 33.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.171 5.171 3 C -0.075 4.075 4 C -0.062 4.062 5 C -0.122 4.122 6 C -0.010 4.010 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.195 4.195 10 N -0.568 5.568 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.189 1.189 15 N -0.167 5.167 16 N -0.201 5.201 17 C -0.013 4.013 18 N -0.147 5.147 19 C -0.091 4.091 20 C -0.144 4.144 21 C -0.022 4.022 22 H 0.085 0.915 23 N -0.269 5.269 24 C -0.075 4.075 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.073 4.073 29 C -0.064 4.064 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.099 0.901 52 H 0.105 0.895 53 H 0.057 0.943 54 H 0.075 0.925 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.218 -33.189 -3.320 33.355 hybrid contribution -0.763 0.638 0.599 1.161 sum -0.545 -32.551 -2.721 32.669 Atomic orbital electron populations 1.22506 0.72782 1.06943 1.05421 1.46231 1.10097 1.04636 1.56157 1.25094 0.86435 0.92529 1.03409 1.20138 1.03211 0.83673 0.99171 1.21331 0.99921 0.97208 0.93755 1.18988 0.95358 0.91059 0.95609 1.21640 1.45812 0.96889 0.93787 0.92809 1.25896 0.95061 0.97124 1.01469 1.70074 1.47582 1.06354 1.32823 0.85525 0.77979 0.78181 0.79828 1.20180 1.20463 1.18948 1.73903 1.19244 1.03173 1.20392 1.74430 1.17513 1.03530 1.24660 1.23012 0.86696 0.88725 1.02847 1.62391 1.18186 0.95482 1.38627 1.23401 0.98855 0.98143 0.88749 1.22429 0.96914 0.92456 1.02571 1.22292 0.92424 0.93643 0.93891 0.91469 1.62026 1.02810 1.26218 1.35853 1.22106 0.89415 1.00061 0.95935 1.21573 0.98014 0.97550 0.98336 1.21572 0.96874 0.96784 1.00456 1.21588 0.95071 1.01041 0.97694 1.22166 0.98863 0.88985 0.97254 1.23099 0.90562 0.91019 1.01761 0.88946 0.87622 0.86730 0.89013 0.87881 0.92798 0.94317 0.98564 0.97387 0.92744 0.87094 0.94483 0.87925 0.88878 0.94207 0.91728 0.92539 0.90837 0.91323 0.91741 0.92236 0.90060 0.89549 0.94332 0.92516 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 9.78 127.77 1.25 2.38 16 2 N -0.48 -13.32 3.21 -538.20 -1.73 -15.05 16 3 C 0.19 6.71 7.32 137.64 1.01 7.72 16 4 C -0.02 -0.75 5.59 29.85 0.17 -0.59 16 5 C -0.08 -3.42 5.14 30.60 0.16 -3.26 16 6 C 0.03 1.38 4.97 29.85 0.15 1.53 16 7 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.00 0.15 5.46 84.66 0.46 0.61 16 10 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 11 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 15 N -0.33 -13.25 12.18 -49.53 -0.60 -13.85 16 16 N -0.36 -13.37 11.04 -58.01 -0.64 -14.01 16 17 C 0.34 10.31 7.05 260.11 1.83 12.14 16 18 N -0.42 -9.35 5.44 -691.38 -3.76 -13.11 16 19 C 0.04 0.58 5.88 86.45 0.51 1.09 16 20 C -0.11 -1.23 6.07 31.49 0.19 -1.04 16 21 C 0.09 1.26 2.79 45.81 0.13 1.39 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 23 N -0.54 -8.11 4.43 -865.88 -3.84 -11.95 16 24 C 0.05 0.80 5.23 86.33 0.45 1.25 16 25 C -0.12 -1.61 6.09 30.64 0.19 -1.42 16 26 C -0.12 -1.28 6.00 30.67 0.18 -1.10 16 27 C -0.12 -1.22 6.09 30.65 0.19 -1.03 16 28 C 0.05 0.59 5.23 86.33 0.45 1.05 16 29 C 0.06 1.33 4.36 86.40 0.38 1.71 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 1.66 7.25 -2.39 -0.02 1.65 16 32 H 0.11 1.43 7.74 -2.39 -0.02 1.42 16 33 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.10 2.93 7.27 -2.38 -0.02 2.91 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.11 1.34 6.99 -2.38 -0.02 1.32 16 41 H 0.04 0.80 7.97 -2.39 -0.02 0.78 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.09 1.05 6.68 -2.39 -0.02 1.03 16 44 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 1.17 6.58 -2.39 -0.02 1.16 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 52 H 0.09 0.78 6.38 -2.39 -0.02 0.76 16 53 H 0.04 0.39 8.14 -2.38 -0.02 0.37 16 54 H 0.06 1.54 6.96 -2.39 -0.02 1.52 16 55 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -73.39 420.89 0.51 -72.88 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.85 Total: 12.22 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 7.92 Total: -8.09 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -10.28 Total: -123.23 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -73.39 0.51 -72.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519656612.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.608 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds