Wall clock time and date at job start Wed Apr 1 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46980 * 270.00009 * 3 2 1 5 5 H 1.48501 * 109.47256 * 29.99597 * 3 2 1 6 6 H 1.48499 * 109.47493 * 149.99978 * 3 2 1 7 7 C 1.38793 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00401 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46908 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21633 * 120.00238 * 359.72097 * 17 16 15 19 19 C 1.47160 * 119.99509 * 179.72415 * 17 16 15 20 20 C 1.36041 * 123.46794 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.82846 * 180.02562 * 20 19 17 22 22 C 1.75496 * 92.46089 * 0.02562 * 21 20 19 23 23 C 1.32851 * 110.57865 * 359.71123 * 22 21 20 24 24 Cl 1.73600 * 123.46940 * 180.28036 * 23 22 21 25 25 H 0.97003 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47277 * 60.00374 * 10 9 7 27 27 H 1.08998 * 109.47382 * 300.00026 * 10 9 7 28 28 H 0.97000 * 119.99549 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47424 * 60.00473 * 14 13 11 30 30 H 1.09006 * 109.46868 * 300.00024 * 14 13 11 31 31 H 1.09009 * 109.46730 * 59.99787 * 15 14 13 32 32 H 1.08998 * 109.46846 * 300.00332 * 15 14 13 33 33 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 34 34 H 1.08003 * 124.58807 * 0.02562 * 20 19 17 35 35 H 1.08001 * 124.71357 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8442 -6.3430 0.0039 14 6 2.3305 -7.7150 0.0039 15 6 3.5026 -8.6985 0.0049 16 7 2.9889 -10.0704 0.0056 17 6 3.8457 -11.1108 0.0122 18 8 5.0455 -10.9106 0.0125 19 6 3.3296 -12.4889 0.0190 20 6 2.0037 -12.7935 0.0185 21 16 1.7697 -14.4818 0.0282 22 6 3.4961 -14.7971 0.0338 23 6 4.1790 -13.6576 0.0222 24 17 5.9133 -13.5807 0.0164 25 1 -0.4851 0.8400 -0.0004 26 1 3.1245 -3.7305 0.8928 27 1 3.1245 -3.7320 -0.8871 28 1 3.8010 -6.1833 0.0041 29 1 1.7222 -7.8752 -0.8862 30 1 1.7217 -7.8749 0.8938 31 1 4.1107 -8.5381 0.8953 32 1 4.1118 -8.5386 -0.8847 33 1 2.0321 -10.2300 0.0057 34 1 1.2071 -12.0642 0.0128 35 1 3.9416 -15.7809 0.0403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522525169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:25 Heat of formation + Delta-G solvation = -45.690938 kcal Electronic energy + Delta-G solvation = -21389.207126 eV Core-core repulsion = 17666.233985 eV Total energy + Delta-G solvation = -3722.973141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36325 -39.24127 -37.84531 -36.34279 -35.97666 -34.03308 -32.44778 -31.03754 -29.91944 -27.99042 -25.61830 -25.42113 -23.16956 -21.89541 -20.48734 -19.83720 -18.91423 -17.89414 -17.64464 -16.54564 -16.22935 -16.00606 -15.52976 -15.32215 -15.26342 -14.81769 -14.42424 -14.02788 -13.96840 -13.80980 -13.67664 -13.44034 -13.20565 -12.58790 -12.42050 -12.09835 -12.06248 -11.91768 -11.69978 -11.20364 -11.07632 -11.04202 -10.78116 -10.26376 -9.84073 -9.64260 -9.52273 -9.50310 -9.09925 -9.02668 -8.97234 -8.27123 -6.52774 -6.23587 -3.94521 0.06233 0.65256 1.06063 1.22149 2.10127 2.46426 2.86319 3.00606 3.09706 3.21611 3.27884 3.33465 3.72578 3.98399 4.18624 4.31513 4.48898 4.64884 4.72506 4.78271 5.08975 5.11842 5.14130 5.19244 5.27211 5.54644 5.58816 5.70750 5.85595 5.93227 6.10899 6.45687 7.00314 7.56933 7.58807 7.78137 8.33500 8.50439 9.21957 10.83837 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.001512 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.614719 B =18513.472758 C =19406.315683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.111 3.889 15 C 0.111 3.889 16 N -0.721 5.721 17 C 0.575 3.425 18 O -0.514 6.514 19 C -0.148 4.148 20 C -0.207 4.207 21 S 0.240 5.760 22 C -0.238 4.238 23 C -0.008 4.008 24 Cl -0.016 7.016 25 H 0.269 0.731 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.402 0.598 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.401 0.599 34 H 0.180 0.820 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.409 -32.880 0.049 33.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.392 5.392 14 C -0.014 4.014 15 C -0.013 4.013 16 N -0.375 5.375 17 C 0.360 3.640 18 O -0.390 6.390 19 C -0.166 4.166 20 C -0.346 4.346 21 S 0.505 5.495 22 C -0.374 4.374 23 C -0.047 4.047 24 Cl 0.013 6.987 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.197 0.803 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.000 -33.866 0.055 34.102 hybrid contribution 3.292 2.224 -0.009 3.973 sum 7.291 -31.642 0.045 32.471 Atomic orbital electron populations 1.70012 1.05958 1.27488 1.46835 1.24990 0.95033 0.99049 0.94491 0.86161 0.79418 0.81519 0.78367 1.20257 1.20742 1.19679 1.22869 0.94940 0.91595 1.59015 0.90861 1.85385 1.04854 0.96384 1.96743 1.23532 1.06685 0.95064 1.05141 1.20330 0.86419 0.86226 0.74936 1.90706 1.15349 1.85557 1.47399 1.45801 1.10298 1.04813 1.78316 1.21313 0.95522 0.81450 1.03132 1.21479 0.96375 0.79833 1.03620 1.45593 1.10045 1.05631 1.76192 1.17384 0.86184 0.83492 0.76955 1.90878 1.14429 1.85369 1.48287 1.19921 0.91739 0.94051 1.10911 1.25719 0.99699 1.03409 1.05749 1.83256 1.02049 0.96478 1.67736 1.25487 0.97752 1.02224 1.11957 1.20654 0.87636 0.91999 1.04394 1.98414 1.05227 1.98548 1.96503 0.92165 0.89029 0.89037 0.76420 0.90921 0.90933 0.90363 0.90347 0.76402 0.80251 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.09 5.49 -17.44 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.50 7.85 -10.98 -0.09 9.42 16 12 O -0.52 -11.21 15.86 5.55 0.09 -11.12 16 13 N -0.74 -9.01 5.56 -60.29 -0.33 -9.35 16 14 C 0.11 1.10 5.79 -4.04 -0.02 1.08 16 15 C 0.11 0.93 5.79 -4.04 -0.02 0.90 16 16 N -0.72 -5.54 5.52 -61.46 -0.34 -5.88 16 17 C 0.58 5.79 7.79 -12.64 -0.10 5.69 16 18 O -0.51 -6.92 15.05 5.25 0.08 -6.84 16 19 C -0.15 -1.20 5.98 -104.61 -0.63 -1.83 16 20 C -0.21 -1.03 10.38 29.94 0.31 -0.72 16 21 S 0.24 0.89 23.02 -107.50 -2.47 -1.58 16 22 C -0.24 -1.31 11.00 28.88 0.32 -0.99 16 23 C -0.01 -0.07 6.49 -38.98 -0.25 -0.32 16 24 Cl -0.02 -0.16 27.24 -51.86 -1.41 -1.57 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 27 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 28 H 0.40 3.81 8.47 -40.82 -0.35 3.46 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.03 6.97 -40.82 -0.28 1.74 16 34 H 0.18 0.41 7.01 -52.48 -0.37 0.04 16 35 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -36.98 354.63 -9.12 -46.09 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.50 Total: 0.10 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.06 Total: -2.40 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.06 Total: -40.46 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -4.69 Total: -5.40 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.41 Total: -1.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.98 -9.12 -46.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522525169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.403 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds