Wall clock time and date at job start Wed Apr 1 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46980 * 270.00009 * 3 2 1 5 5 H 1.48501 * 109.47256 * 29.99597 * 3 2 1 6 6 H 1.48499 * 109.47493 * 149.99978 * 3 2 1 7 7 C 1.38793 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00401 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46908 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21633 * 120.00238 * 359.72097 * 17 16 15 19 19 C 1.47160 * 119.99509 * 179.72415 * 17 16 15 20 20 C 1.36041 * 123.46794 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.82846 * 180.02562 * 20 19 17 22 22 C 1.75496 * 92.46089 * 0.02562 * 21 20 19 23 23 C 1.32851 * 110.57865 * 359.71123 * 22 21 20 24 24 Cl 1.73600 * 123.46940 * 180.28036 * 23 22 21 25 25 H 0.97003 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47277 * 60.00374 * 10 9 7 27 27 H 1.08998 * 109.47382 * 300.00026 * 10 9 7 28 28 H 0.97000 * 119.99549 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47424 * 60.00473 * 14 13 11 30 30 H 1.09006 * 109.46868 * 300.00024 * 14 13 11 31 31 H 1.09009 * 109.46730 * 59.99787 * 15 14 13 32 32 H 1.08998 * 109.46846 * 300.00332 * 15 14 13 33 33 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 34 34 H 1.08003 * 124.58807 * 0.02562 * 20 19 17 35 35 H 1.08001 * 124.71357 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8442 -6.3430 0.0039 14 6 2.3305 -7.7150 0.0039 15 6 3.5026 -8.6985 0.0049 16 7 2.9889 -10.0704 0.0056 17 6 3.8457 -11.1108 0.0122 18 8 5.0455 -10.9106 0.0125 19 6 3.3296 -12.4889 0.0190 20 6 2.0037 -12.7935 0.0185 21 16 1.7697 -14.4818 0.0282 22 6 3.4961 -14.7971 0.0338 23 6 4.1790 -13.6576 0.0222 24 17 5.9133 -13.5807 0.0164 25 1 -0.4851 0.8400 -0.0004 26 1 3.1245 -3.7305 0.8928 27 1 3.1245 -3.7320 -0.8871 28 1 3.8010 -6.1833 0.0041 29 1 1.7222 -7.8752 -0.8862 30 1 1.7217 -7.8749 0.8938 31 1 4.1107 -8.5381 0.8953 32 1 4.1118 -8.5386 -0.8847 33 1 2.0321 -10.2300 0.0057 34 1 1.2071 -12.0642 0.0128 35 1 3.9416 -15.7809 0.0403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522525169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:24 Heat of formation + Delta-G solvation = -73.647821 kcal Electronic energy + Delta-G solvation = -21390.419427 eV Core-core repulsion = 17666.233985 eV Total energy + Delta-G solvation = -3724.185442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08260 -40.54813 -38.42407 -36.96292 -36.88666 -35.06049 -34.57843 -31.94342 -30.88275 -29.02134 -27.64174 -26.09156 -23.96323 -22.57783 -21.74037 -20.46688 -19.88266 -19.31683 -18.24772 -17.87496 -17.10304 -17.08740 -16.87077 -16.53766 -16.32501 -15.92898 -15.67959 -15.35717 -14.73572 -14.56116 -14.43859 -14.39037 -14.34610 -13.83347 -13.66067 -13.16011 -12.91539 -12.88944 -12.82522 -12.60244 -12.58029 -12.49089 -11.76895 -11.73033 -11.13893 -11.11373 -10.91736 -10.31123 -10.27605 -10.16761 -10.01649 -9.38012 -8.65693 -8.34404 -6.12023 -0.36746 0.25018 0.65161 0.66386 1.24968 1.42792 1.45031 1.55705 1.58889 1.59838 1.85287 2.20034 2.27616 2.53836 2.99925 3.32539 3.53542 3.64105 3.90055 4.00555 4.00835 4.25739 4.31760 4.33512 4.39044 4.53374 4.72259 4.80756 4.81315 4.89844 5.21273 5.37945 5.42818 6.20394 6.38758 6.45589 7.07328 7.11823 7.19658 8.74695 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.001512 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.614719 B =18513.472758 C =19406.315683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.712 5.712 14 C 0.116 3.884 15 C 0.122 3.878 16 N -0.711 5.711 17 C 0.572 3.428 18 O -0.558 6.558 19 C -0.182 4.182 20 C -0.199 4.199 21 S 0.312 5.688 22 C -0.240 4.240 23 C -0.037 4.037 24 Cl -0.044 7.044 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.418 0.582 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.415 0.585 34 H 0.207 0.793 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -33.999 0.054 34.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.008 4.008 15 C -0.002 4.002 16 N -0.364 5.364 17 C 0.358 3.642 18 O -0.437 6.437 19 C -0.200 4.200 20 C -0.338 4.338 21 S 0.578 5.422 22 C -0.376 4.376 23 C -0.076 4.076 24 Cl -0.016 7.016 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.255 0.745 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.224 0.776 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.328 -35.028 0.059 35.295 hybrid contribution 3.115 2.349 -0.011 3.901 sum 7.443 -32.679 0.048 33.516 Atomic orbital electron populations 1.70172 1.07910 1.28599 1.48001 1.26099 0.95960 1.03250 0.93763 0.84971 0.78205 0.76145 0.78769 1.19352 1.20303 1.18294 1.23216 0.95381 0.92082 1.58845 0.89923 1.85524 1.10436 0.99143 1.97060 1.23384 1.03655 0.94293 1.06976 1.19982 0.86126 0.86508 0.74992 1.90697 1.17225 1.86017 1.49989 1.45513 1.10607 1.04707 1.75899 1.21378 0.96060 0.80049 1.03360 1.21292 0.95492 0.79854 1.03593 1.45462 1.10672 1.04908 1.75403 1.17737 0.85793 0.84555 0.76088 1.90848 1.16212 1.86072 1.50585 1.19801 0.92936 0.92931 1.14339 1.26121 0.99124 1.05362 1.03178 1.83112 0.99446 0.94480 1.65163 1.25845 0.99291 1.02301 1.10134 1.20845 0.86510 0.93205 1.06992 1.98392 1.07717 1.98651 1.96812 0.91989 0.87105 0.87091 0.74461 0.90709 0.90723 0.90455 0.90431 0.74776 0.77621 0.78566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.41 13.22 21.65 0.29 -55.13 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 18.57 7.85 87.66 0.69 19.26 16 12 O -0.56 -24.42 15.86 -3.04 -0.05 -24.47 16 13 N -0.71 -16.03 5.56 -463.05 -2.57 -18.60 16 14 C 0.12 2.08 5.79 86.38 0.50 2.58 16 15 C 0.12 1.85 5.79 86.38 0.50 2.35 16 16 N -0.71 -9.90 5.52 -466.61 -2.58 -12.48 16 17 C 0.57 11.25 7.79 86.59 0.67 11.92 16 18 O -0.56 -15.34 15.05 -4.14 -0.06 -15.40 16 19 C -0.18 -2.77 5.98 -19.86 -0.12 -2.88 16 20 C -0.20 -1.45 10.38 67.31 0.70 -0.75 16 21 S 0.31 1.32 23.02 -56.49 -1.30 0.02 16 22 C -0.24 -2.22 11.00 66.64 0.73 -1.48 16 23 C -0.04 -0.60 6.49 22.68 0.15 -0.46 16 24 Cl -0.04 -0.91 27.24 -2.72 -0.07 -0.99 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 27 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 28 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.41 3.28 6.97 -92.71 -0.65 2.64 16 34 H 0.21 0.20 7.01 -2.91 -0.02 0.18 16 35 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -83.67 354.63 -0.38 -84.04 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.26 Total: 9.98 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.37 Total: -3.06 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -4.86 Total: -86.21 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.11 Total: -39.87 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -2.46 Total: -9.24 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.07 Total: -0.99 kcal Total: -83.67 -0.38 -84.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522525169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.396 kcal (2) G-P(sol) polarization free energy of solvation -83.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds