Wall clock time and date at job start Wed Apr 1 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46547 * 179.38636 * 3 2 1 5 5 C 1.36964 * 119.99719 * 90.49965 * 4 3 2 6 6 H 1.07998 * 119.99915 * 161.67765 * 5 4 3 7 7 C 1.38941 * 120.00160 * 341.39385 * 5 4 3 8 8 N 1.31440 * 119.99568 * 358.76226 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 178.75715 * 7 5 4 10 10 H 1.48498 * 109.46903 * 60.00639 * 9 7 5 11 11 H 1.48501 * 109.46970 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47397 * 300.00428 * 9 7 5 13 13 C 1.34778 * 119.99961 * 270.49294 * 4 3 2 14 14 O 1.21763 * 119.99772 * 175.01732 * 13 4 3 15 15 C 1.46470 * 120.00365 * 355.01828 * 13 4 3 16 16 C 1.40607 * 126.58962 * 51.20950 * 15 13 4 17 17 N 1.30724 * 108.74112 * 179.81620 * 16 15 13 18 18 N 1.40021 * 109.62863 * 0.45608 * 17 16 15 19 19 C 1.36265 * 132.00662 * 179.73376 * 18 17 16 20 20 C 1.35203 * 120.71998 * 179.97438 * 19 18 17 21 21 C 1.40126 * 120.33052 * 0.02562 * 20 19 18 22 22 C 1.36573 * 119.39779 * 359.95424 * 21 20 19 23 23 Br 1.89095 * 120.38257 * 180.02562 * 22 21 20 24 24 C 1.36578 * 107.91000 * 359.71290 * 18 17 16 25 25 H 1.09000 * 109.46997 * 59.39173 * 3 2 1 26 26 H 1.08992 * 109.47475 * 299.38769 * 3 2 1 27 27 H 0.97005 * 119.99534 * 179.97438 * 8 7 5 28 28 H 1.08009 * 125.63099 * 0.02562 * 16 15 13 29 29 H 1.08000 * 119.63344 * 359.97438 * 19 18 17 30 30 H 1.08006 * 119.83338 * 180.02562 * 20 19 18 31 31 H 1.07994 * 120.30164 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0957 1.3821 -0.0148 5 6 3.3333 2.0370 1.1644 6 1 3.9565 2.9190 1.1761 7 6 2.7678 1.5703 2.3446 8 7 1.9852 0.5144 2.3256 9 14 3.1200 2.4431 3.9581 10 1 2.6563 3.8511 3.8707 11 1 2.4034 1.7531 5.0607 12 1 4.5804 2.4185 4.2258 13 6 3.3105 2.0084 -1.1887 14 8 3.6282 3.1837 -1.2025 15 6 3.1617 1.2752 -2.4480 16 6 2.0560 0.5008 -2.8414 17 7 2.2902 0.0071 -4.0289 18 7 3.5542 0.4189 -4.4686 19 6 4.2459 0.1711 -5.6162 20 6 5.4769 0.6964 -5.8078 21 6 6.0616 1.5059 -4.8248 22 6 5.3763 1.7606 -3.6712 23 35 6.1385 2.8499 -2.3266 24 6 4.1019 1.2052 -3.4954 25 1 2.9716 -0.5224 -0.8845 26 1 2.9717 -0.5034 0.8953 27 1 1.5907 0.1883 3.1496 28 1 1.1595 0.3430 -2.2600 29 1 3.8059 -0.4517 -6.3810 30 1 6.0123 0.4909 -6.7230 31 1 7.0451 1.9249 -4.9781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236271.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:33 Heat of formation + Delta-G solvation = 119.428710 kcal Electronic energy + Delta-G solvation = -22096.174596 eV Core-core repulsion = 18620.029823 eV Total energy + Delta-G solvation = -3476.144773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.23729 -40.31293 -38.29225 -37.53351 -36.09805 -34.55481 -33.57715 -32.07332 -31.23367 -29.73153 -29.02110 -26.72963 -24.66409 -24.23890 -23.18997 -20.94595 -19.70976 -18.86318 -17.99229 -17.80782 -17.59209 -16.85998 -16.77132 -16.29688 -15.83347 -15.61083 -15.30253 -14.82725 -14.56632 -14.13124 -13.71030 -13.44100 -13.40972 -13.33380 -13.13547 -12.91679 -12.90715 -12.42626 -12.30086 -12.11789 -12.06904 -12.01149 -11.21733 -10.86111 -10.65592 -10.51450 -10.32306 -9.76877 -8.67970 -8.28293 -5.92026 -0.51019 -0.09402 0.55827 1.16511 1.23658 1.45784 1.49248 1.56239 1.94797 2.06458 2.20347 2.33097 2.38367 3.02422 3.10983 3.36182 3.41012 3.64262 3.76801 3.82040 4.13693 4.25598 4.38610 4.50901 4.62196 4.77598 4.95409 5.08492 5.13238 5.24971 5.51054 5.70670 6.10853 6.30094 6.50578 6.99050 7.18360 7.41729 8.02811 8.70358 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.005636 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.705408 B = 4966.754897 C = 6632.593790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.267 3.733 3 C 0.229 3.771 4 N -0.453 5.453 5 C -0.313 4.313 6 H 0.088 0.912 7 C -0.004 4.004 8 N -0.908 5.908 9 Si 0.990 3.010 10 H -0.284 1.284 11 H -0.279 1.279 12 H -0.262 1.262 13 C 0.535 3.465 14 O -0.582 6.582 15 C -0.305 4.305 16 C 0.108 3.892 17 N -0.323 5.323 18 N -0.266 5.266 19 C 0.115 3.885 20 C -0.138 4.138 21 C -0.017 4.017 22 C -0.128 4.128 23 Br -0.015 7.015 24 C 0.145 3.855 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.272 0.728 28 H 0.181 0.819 29 H 0.215 0.785 30 H 0.223 0.777 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.468 -3.752 -17.209 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.050 4.050 3 C 0.102 3.898 4 N -0.174 5.174 5 C -0.440 4.440 6 H 0.106 0.894 7 C -0.203 4.203 8 N -0.549 5.549 9 Si 0.815 3.185 10 H -0.210 1.210 11 H -0.204 1.204 12 H -0.186 1.186 13 C 0.324 3.676 14 O -0.464 6.464 15 C -0.320 4.320 16 C -0.071 4.071 17 N -0.145 5.145 18 N -0.032 5.032 19 C -0.010 4.010 20 C -0.159 4.159 21 C -0.043 4.043 22 C -0.210 4.210 23 Br 0.070 6.930 24 C 0.023 3.977 25 H 0.117 0.883 26 H 0.154 0.846 27 H 0.082 0.918 28 H 0.197 0.803 29 H 0.231 0.769 30 H 0.240 0.760 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 11.526 -3.630 -17.415 21.197 hybrid contribution -0.025 0.761 1.840 1.992 sum 11.502 -2.869 -15.575 19.573 Atomic orbital electron populations 1.80902 1.14288 1.09701 1.14460 1.29675 0.95707 0.91315 0.88275 1.18976 0.80395 0.85687 1.04742 1.43494 1.57978 1.11051 1.04870 1.19651 1.28824 1.11536 0.84031 0.89372 1.25921 0.95003 0.97161 1.02219 1.69771 1.31846 1.24094 1.29203 0.85013 0.78839 0.77609 0.77064 1.20999 1.20423 1.18629 1.17070 0.82062 0.86078 0.82391 1.90672 1.52033 1.16503 1.87241 1.19892 0.98198 1.14696 0.99224 1.23946 0.98118 0.92443 0.92602 1.77458 0.94906 1.27436 1.14745 1.46349 1.12429 1.31232 1.13161 1.22744 0.92638 0.99328 0.86289 1.21584 0.93576 0.98379 1.02405 1.21931 1.00576 0.92987 0.88788 1.21298 0.94847 1.05457 0.99434 1.96881 1.80298 1.65052 1.50752 1.18926 0.93791 0.94996 0.89976 0.88293 0.84566 0.91754 0.80252 0.76857 0.76016 0.79720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.17 18.47 20.01 0.37 -24.80 16 2 C 0.27 12.46 10.98 89.44 0.98 13.44 16 3 C 0.23 9.98 4.76 84.57 0.40 10.38 16 4 N -0.45 -22.46 2.58 -650.13 -1.68 -24.14 16 5 C -0.31 -16.65 9.37 84.06 0.79 -15.86 16 6 H 0.09 4.93 7.35 -2.91 -0.02 4.91 16 7 C 0.00 -0.20 5.32 84.92 0.45 0.26 16 8 N -0.91 -46.18 8.39 21.66 0.18 -46.00 16 9 Si 0.99 41.99 29.55 68.60 2.03 44.01 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 C 0.53 26.02 6.53 86.39 0.56 26.59 16 14 O -0.58 -31.23 14.13 -4.55 -0.06 -31.29 16 15 C -0.31 -12.59 4.95 -19.90 -0.10 -12.68 16 16 C 0.11 4.11 9.87 85.44 0.84 4.95 16 17 N -0.32 -10.82 12.57 -56.59 -0.71 -11.53 16 18 N -0.27 -7.47 3.86 -187.17 -0.72 -8.19 16 19 C 0.12 1.74 11.18 83.30 0.93 2.67 16 20 C -0.14 -1.28 9.98 22.03 0.22 -1.06 16 21 C -0.02 -0.28 9.83 22.34 0.22 -0.06 16 22 C -0.13 -3.65 6.23 22.34 0.14 -3.51 16 23 Br -0.02 -0.52 30.08 -20.37 -0.61 -1.13 16 24 C 0.15 4.93 6.73 39.52 0.27 5.20 16 25 H 0.10 3.74 6.03 -2.39 -0.01 3.72 16 26 H 0.14 6.10 6.22 -2.39 -0.01 6.08 16 27 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 28 H 0.18 7.15 5.64 -2.91 -0.02 7.13 16 29 H 0.21 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.22 -0.46 8.06 -2.91 -0.02 -0.49 16 31 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -73.73 294.42 5.71 -68.02 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.21 Total: 4.73 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 5.71 Total: 30.31 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -2.56 Total: -114.65 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.06 Total: -31.29 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.61 Total: -1.13 kcal Total: -73.73 5.71 -68.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236271.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.451 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds