Wall clock time and date at job start Wed Apr 1 2020 05:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00140 * 2 1 4 4 C 1.52991 * 109.47062 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47530 * 65.00342 * 4 3 2 6 6 C 1.36776 * 119.99790 * 270.00352 * 5 4 3 7 7 H 1.07994 * 120.00228 * 130.58741 * 6 5 4 8 8 C 1.39087 * 119.99853 * 310.58195 * 6 5 4 9 9 N 1.31349 * 119.99601 * 353.45295 * 8 6 5 10 10 Si 1.86795 * 120.00182 * 173.45021 * 8 6 5 11 11 H 1.48499 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47345 * 119.99910 * 10 8 6 13 13 H 1.48501 * 109.47501 * 240.00602 * 10 8 6 14 14 C 1.34781 * 120.00196 * 89.99400 * 5 4 3 15 15 O 1.21689 * 119.99569 * 3.88125 * 14 5 4 16 16 C 1.46995 * 119.99743 * 183.88033 * 14 5 4 17 17 N 1.30657 * 125.52908 * 173.42583 * 16 14 5 18 18 C 1.30683 * 115.90246 * 180.02562 * 17 16 14 19 19 C 1.50693 * 122.12292 * 179.72955 * 18 17 16 20 20 C 1.34397 * 115.75246 * 0.02562 * 18 17 16 21 21 Br 1.89101 * 125.45216 * 179.97438 * 20 18 17 22 22 S 1.71070 * 109.09537 * 0.02562 * 20 18 17 23 23 H 1.09007 * 109.46559 * 299.99791 * 1 2 3 24 24 H 1.09000 * 109.47564 * 59.99365 * 1 2 3 25 25 H 1.08997 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46804 * 60.00289 * 3 2 1 27 27 H 1.09002 * 109.46904 * 300.00936 * 3 2 1 28 28 H 1.08995 * 109.47311 * 304.99883 * 4 3 2 29 29 H 1.09006 * 109.47107 * 185.00111 * 4 3 2 30 30 H 0.97001 * 119.99431 * 184.99713 * 9 8 6 31 31 H 1.09007 * 109.47044 * 90.02587 * 19 18 17 32 32 H 1.09005 * 109.47238 * 210.02220 * 19 18 17 33 33 H 1.09001 * 109.47687 * 330.02353 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0966 -0.7954 -1.3369 7 1 3.6489 -1.3272 -2.1633 8 6 4.7961 -1.4932 -0.3580 9 7 5.4487 -0.8387 0.5753 10 14 4.8076 -3.3611 -0.3706 11 1 4.0029 -3.8533 -1.5176 12 1 6.2047 -3.8467 -0.5023 13 1 4.2245 -3.8683 0.8974 14 6 4.2615 1.3338 -2.3219 15 8 4.2222 2.5463 -2.2268 16 6 4.6207 0.7081 -3.6026 17 7 4.7985 1.3395 -4.7326 18 6 5.1144 0.5948 -5.7590 19 6 5.3455 1.1762 -7.1299 20 6 5.2140 -0.7232 -5.5157 21 35 5.6530 -2.0447 -6.7950 22 16 4.8787 -1.0141 -3.8636 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8514 0.5682 0.8409 29 1 3.9785 2.1765 0.0889 30 1 5.9954 -1.3220 1.2144 31 1 6.3981 1.4367 -7.2414 32 1 5.0708 0.4418 -7.8872 33 1 4.7348 2.0707 -7.2530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556908680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:26 Heat of formation + Delta-G solvation = -47.591020 kcal Electronic energy + Delta-G solvation = -20805.842168 eV Core-core repulsion = 17425.606077 eV Total energy + Delta-G solvation = -3380.236092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13960 -40.21202 -38.51179 -36.78296 -33.79537 -33.72609 -31.75808 -31.07925 -28.12636 -27.38159 -27.32524 -26.13923 -23.61237 -21.57868 -20.47569 -19.66404 -18.52016 -17.95169 -17.36017 -16.92115 -16.60299 -16.30268 -16.10546 -15.84559 -15.34920 -14.93922 -14.60891 -14.12755 -13.74798 -13.62738 -13.46120 -13.34772 -13.12604 -12.96743 -12.79033 -12.58120 -12.30465 -12.17581 -12.03689 -11.85153 -11.49170 -11.15572 -10.88102 -10.52304 -10.42822 -10.21162 -9.60074 -9.46204 -8.47338 -6.37674 -0.77811 -0.02229 0.80069 0.87188 1.30909 1.47970 1.48831 1.59797 2.14296 2.33336 2.48242 2.91365 3.06838 3.60231 4.04503 4.10973 4.24908 4.40918 4.50965 4.60072 4.61093 4.67084 4.71231 4.78697 4.84318 4.88257 5.17949 5.25277 5.33766 5.82916 6.15825 6.39808 6.61930 6.88076 7.27746 7.71212 8.54399 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.004863 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.575523 B = 5756.374598 C = 6775.356110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.062 3.938 4 C 0.117 3.883 5 N -0.416 5.416 6 C -0.341 4.341 7 H 0.101 0.899 8 C 0.040 3.960 9 N -0.865 5.865 10 Si 0.956 3.044 11 H -0.243 1.243 12 H -0.265 1.265 13 H -0.269 1.269 14 C 0.525 3.475 15 O -0.608 6.608 16 C 0.002 3.998 17 N -0.452 5.452 18 C 0.074 3.926 19 C -0.080 4.080 20 C -0.342 4.342 21 Br 0.038 6.962 22 S 0.333 5.667 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.285 0.715 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -6.556 -8.308 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.006 4.006 5 N -0.133 5.133 6 C -0.476 4.476 7 H 0.117 0.883 8 C -0.170 4.170 9 N -0.498 5.498 10 Si 0.777 3.223 11 H -0.165 1.165 12 H -0.190 1.190 13 H -0.194 1.194 14 C 0.313 3.687 15 O -0.495 6.495 16 C -0.271 4.271 17 N -0.171 5.171 18 C -0.068 4.068 19 C -0.139 4.139 20 C -0.543 4.543 21 Br 0.120 6.880 22 S 0.596 5.404 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.425 -6.969 -7.889 10.802 hybrid contribution 0.001 0.526 -0.259 0.586 sum -2.424 -6.443 -8.149 10.668 Atomic orbital electron populations 1.22893 0.80620 1.03457 1.00186 1.88061 1.20401 1.27457 1.95320 1.22827 0.93941 0.84936 0.99858 1.21580 0.91818 0.98477 0.88750 1.43260 1.54517 1.06459 1.09101 1.19464 1.35716 0.81060 1.11316 0.88295 1.26260 0.92498 1.04426 0.93848 1.69786 1.25361 1.39004 1.15642 0.85397 0.79518 0.77165 0.80264 1.16547 1.19016 1.19361 1.17460 0.81569 0.86016 0.83690 1.90641 1.59382 1.14533 1.84964 1.27225 1.08092 0.94968 0.96811 1.66745 1.14576 1.37515 0.98221 1.20608 1.00470 0.88338 0.97406 1.20550 1.03518 1.01795 0.88020 1.28653 1.19244 0.99370 1.07056 1.96540 1.92294 1.47688 1.51468 1.85131 1.55105 1.06557 0.93637 0.92865 0.94551 0.88607 0.90655 0.95249 0.87855 0.91356 0.90488 0.89405 0.88813 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.39 -15.21 10.18 -148.98 -1.52 -16.73 16 3 C 0.06 2.39 6.28 71.98 0.45 2.84 16 4 C 0.12 5.31 5.43 86.38 0.47 5.78 16 5 N -0.42 -20.45 2.42 -639.75 -1.55 -22.00 16 6 C -0.34 -15.95 6.38 84.13 0.54 -15.41 16 7 H 0.10 4.49 5.29 -16.30 -0.09 4.41 16 8 C 0.04 1.80 5.21 84.97 0.44 2.25 16 9 N -0.86 -41.60 11.47 21.69 0.25 -41.35 16 10 Si 0.96 35.24 29.56 68.60 2.03 37.27 16 11 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 12 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 13 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 14 C 0.53 27.40 7.62 86.54 0.66 28.06 16 15 O -0.61 -34.65 16.63 -4.31 -0.07 -34.73 16 16 C 0.00 0.11 7.29 87.16 0.64 0.74 16 17 N -0.45 -20.56 10.57 -178.33 -1.89 -22.44 16 18 C 0.07 2.74 6.68 41.85 0.28 3.02 16 19 C -0.08 -2.22 10.00 71.23 0.71 -1.51 16 20 C -0.34 -11.93 6.79 66.94 0.45 -11.47 16 21 Br 0.04 0.99 32.87 -20.37 -0.67 0.32 16 22 S 0.33 13.09 18.50 -56.49 -1.04 12.05 16 23 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 4.91 5.88 -2.39 -0.01 4.90 16 29 H 0.07 3.18 7.37 -2.38 -0.02 3.16 16 30 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 31 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.09 2.17 7.25 -2.38 -0.02 2.15 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -60.61 317.33 2.51 -58.10 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.08 Total: 13.29 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 5.89 Total: 16.23 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.18 Total: -85.80 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.59 Total: -51.45 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Atomic # 16 Polarization: 13.09 SS G_CDS: -1.04 Total: 12.05 kcal Atomic # 35 Polarization: 0.99 SS G_CDS: -0.67 Total: 0.32 kcal Total: -60.61 2.51 -58.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556908680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.510 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds