Wall clock time and date at job start Wed Apr 1 2020 05:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 120.00105 * 2 1 4 4 H 1.48500 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46998 * 299.99647 * 3 2 1 6 6 H 1.48497 * 109.47195 * 59.99629 * 3 2 1 7 7 C 1.38803 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00081 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00131 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47301 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00240 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.40097 * 119.99738 * 180.02562 * 13 11 10 15 15 C 1.39720 * 119.99671 * 180.02562 * 14 13 11 16 16 C 1.38856 * 120.06694 * 0.02562 * 15 14 13 17 17 C 1.38322 * 119.91417 * 179.97438 * 16 15 14 18 18 F 1.35093 * 119.98233 * 180.02562 * 17 16 15 19 19 C 1.38522 * 120.03633 * 0.02562 * 17 16 15 20 20 C 1.38241 * 120.12936 * 359.95741 * 19 17 16 21 21 C 1.38200 * 120.08884 * 0.04492 * 20 19 17 22 22 Br 1.89105 * 120.01717 * 180.25573 * 21 20 19 23 23 H 0.97000 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47274 * 59.99569 * 10 9 7 25 25 H 1.09006 * 109.47208 * 299.99999 * 10 9 7 26 26 H 0.96998 * 119.99839 * 359.97438 * 13 11 10 27 27 H 0.96998 * 120.00423 * 359.97438 * 14 13 11 28 28 H 1.08006 * 120.04323 * 359.95850 * 16 15 14 29 29 H 1.07994 * 119.93596 * 179.97438 * 19 17 16 30 30 H 1.08001 * 119.95338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8441 -6.3432 -0.0007 14 7 2.3528 -7.6551 -0.0019 15 6 3.2410 -8.7337 -0.0020 16 6 4.6109 -8.5068 -0.0004 17 6 5.4874 -9.5769 0.0000 18 9 6.8204 -9.3577 0.0020 19 6 4.9990 -10.8731 -0.0017 20 6 3.6355 -11.1010 -0.0029 21 6 2.7550 -10.0357 -0.0033 22 35 0.8903 -10.3497 0.0024 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7313 0.8905 25 1 3.1245 -3.7314 -0.8895 26 1 3.8009 -6.1835 -0.0012 27 1 1.3960 -7.8148 -0.0018 28 1 4.9916 -7.4960 0.0002 29 1 5.6848 -11.7074 -0.0018 30 1 3.2578 -12.1128 -0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557046461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:19 Heat of formation + Delta-G solvation = -13.609587 kcal Electronic energy + Delta-G solvation = -18720.951015 eV Core-core repulsion = 15218.728164 eV Total energy + Delta-G solvation = -3502.222851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.30140 -40.24907 -39.03902 -36.02130 -32.84241 -32.51432 -32.13005 -30.20532 -29.27697 -27.64047 -25.56602 -23.39394 -22.67965 -20.99236 -19.04215 -18.00751 -17.69292 -16.49815 -16.42411 -16.26477 -16.02108 -15.39081 -15.27698 -14.87796 -14.34375 -14.25095 -13.97089 -13.70559 -13.41818 -12.70751 -12.55761 -12.37311 -11.84213 -11.73584 -11.12605 -11.11678 -11.00117 -10.84613 -10.60526 -9.92523 -9.86767 -9.72482 -9.15403 -9.08173 -8.37338 -7.65816 -6.61862 -6.30344 -4.02590 0.56798 0.90131 1.29696 1.64994 2.73331 3.09410 3.10427 3.17048 3.25369 3.33989 3.67088 4.10592 4.14305 4.18599 4.58373 4.72475 4.87370 5.02085 5.05521 5.27007 5.40770 5.45304 5.66624 5.69071 5.71632 5.93923 6.22177 6.50811 7.08429 7.43433 7.52078 8.26759 8.31519 9.15357 10.77066 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.002582 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.892677 B =10841.541251 C =12418.287022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.075 0.925 9 S -0.050 6.050 10 C -0.145 4.145 11 C 0.534 3.466 12 O -0.509 6.509 13 N -0.535 5.535 14 N -0.523 5.523 15 C 0.279 3.721 16 C -0.239 4.239 17 C 0.173 3.827 18 F -0.132 7.132 19 C -0.214 4.214 20 C -0.004 4.004 21 C -0.185 4.185 22 Br -0.038 7.038 23 H 0.269 0.731 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.421 0.579 27 H 0.440 0.560 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -24.616 -0.001 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.176 5.824 10 C -0.297 4.297 11 C 0.320 3.680 12 O -0.381 6.381 13 N -0.285 5.285 14 N -0.247 5.247 15 C 0.168 3.832 16 C -0.264 4.264 17 C 0.153 3.847 18 F -0.110 7.110 19 C -0.236 4.236 20 C -0.024 4.024 21 C -0.271 4.271 22 Br 0.047 6.953 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.263 0.737 27 H 0.287 0.713 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.641 -24.681 0.001 25.559 hybrid contribution 2.716 1.423 -0.001 3.066 sum 9.356 -23.258 0.000 25.069 Atomic orbital electron populations 1.70017 1.05986 1.27548 1.46602 1.25005 0.95052 0.99123 0.94353 0.86085 0.79575 0.81681 0.77967 1.19543 1.20505 1.20511 1.22899 0.95026 0.91385 1.59332 0.90647 1.85496 1.03916 0.96191 1.96775 1.23491 1.07384 0.93101 1.05727 1.20722 0.86485 0.85216 0.75578 1.90745 1.14969 1.84864 1.47502 1.45255 1.09885 0.94444 1.78950 1.43819 1.08029 0.93407 1.79399 1.16988 0.88959 0.85340 0.91941 1.20261 0.90603 0.99663 1.15867 1.17351 0.76998 0.93476 0.96924 1.91533 1.30573 1.95672 1.93219 1.20868 0.95885 0.95516 1.11373 1.20690 0.91359 0.97938 0.92423 1.21058 0.91611 0.93283 1.21105 1.96750 1.04570 1.95919 1.98073 0.92100 0.88435 0.88440 0.73704 0.71277 0.84279 0.84027 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 8 H 0.08 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.05 -1.29 20.57 -107.50 -2.21 -3.50 16 10 C -0.15 -2.68 6.16 36.00 0.22 -2.46 16 11 C 0.53 9.30 7.96 -10.98 -0.09 9.22 16 12 O -0.51 -10.88 15.70 5.56 0.09 -10.79 16 13 N -0.53 -7.00 6.22 31.22 0.19 -6.80 16 14 N -0.52 -6.69 6.40 32.42 0.21 -6.48 16 15 C 0.28 3.02 6.71 -83.76 -0.56 2.45 16 16 C -0.24 -2.30 9.46 -39.32 -0.37 -2.67 16 17 C 0.17 1.57 7.30 -39.45 -0.29 1.28 16 18 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 19 C -0.21 -1.62 10.02 -39.48 -0.40 -2.02 16 20 C 0.00 -0.03 9.78 -39.59 -0.39 -0.42 16 21 C -0.18 -1.80 6.24 -39.32 -0.25 -2.05 16 22 Br -0.04 -0.38 32.11 -68.01 -2.18 -2.56 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 25 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 26 H 0.42 4.13 6.61 -182.60 -1.21 2.93 16 27 H 0.44 6.11 6.39 -182.60 -1.17 4.95 16 28 H 0.14 1.14 6.20 -52.48 -0.33 0.82 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -32.30 308.70 -9.36 -41.66 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.93 Total: 3.10 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.92 Total: -9.14 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 1.14 Total: -38.01 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.21 Total: -3.50 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.18 Total: -2.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.30 -9.36 -41.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557046461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.053 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds