Wall clock time and date at job start Wed Apr 1 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 120.00105 * 2 1 4 4 H 1.48500 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46998 * 299.99647 * 3 2 1 6 6 H 1.48497 * 109.47195 * 59.99629 * 3 2 1 7 7 C 1.38803 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00081 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00131 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47301 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00240 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.40097 * 119.99738 * 180.02562 * 13 11 10 15 15 C 1.39720 * 119.99671 * 180.02562 * 14 13 11 16 16 C 1.38856 * 120.06694 * 0.02562 * 15 14 13 17 17 C 1.38322 * 119.91417 * 179.97438 * 16 15 14 18 18 F 1.35093 * 119.98233 * 180.02562 * 17 16 15 19 19 C 1.38522 * 120.03633 * 0.02562 * 17 16 15 20 20 C 1.38241 * 120.12936 * 359.95741 * 19 17 16 21 21 C 1.38200 * 120.08884 * 0.04492 * 20 19 17 22 22 Br 1.89105 * 120.01717 * 180.25573 * 21 20 19 23 23 H 0.97000 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47274 * 59.99569 * 10 9 7 25 25 H 1.09006 * 109.47208 * 299.99999 * 10 9 7 26 26 H 0.96998 * 119.99839 * 359.97438 * 13 11 10 27 27 H 0.96998 * 120.00423 * 359.97438 * 14 13 11 28 28 H 1.08006 * 120.04323 * 359.95850 * 16 15 14 29 29 H 1.07994 * 119.93596 * 179.97438 * 19 17 16 30 30 H 1.08001 * 119.95338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8441 -6.3432 -0.0007 14 7 2.3528 -7.6551 -0.0019 15 6 3.2410 -8.7337 -0.0020 16 6 4.6109 -8.5068 -0.0004 17 6 5.4874 -9.5769 0.0000 18 9 6.8204 -9.3577 0.0020 19 6 4.9990 -10.8731 -0.0017 20 6 3.6355 -11.1010 -0.0029 21 6 2.7550 -10.0357 -0.0033 22 35 0.8903 -10.3497 0.0024 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7313 0.8905 25 1 3.1245 -3.7314 -0.8895 26 1 3.8009 -6.1835 -0.0012 27 1 1.3960 -7.8148 -0.0018 28 1 4.9916 -7.4960 0.0002 29 1 5.6848 -11.7074 -0.0018 30 1 3.2578 -12.1128 -0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557046461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:18 Heat of formation + Delta-G solvation = -34.339174 kcal Electronic energy + Delta-G solvation = -18721.849917 eV Core-core repulsion = 15218.728164 eV Total energy + Delta-G solvation = -3503.121753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.01914 -41.28802 -40.09656 -37.07803 -34.58863 -33.80348 -33.01150 -31.22747 -30.23690 -28.64301 -27.63357 -24.22739 -23.45744 -22.15686 -20.23351 -19.45564 -18.93593 -17.69531 -17.11928 -17.08826 -16.88035 -16.84093 -16.62878 -16.19653 -16.07188 -15.14979 -14.90132 -14.84354 -14.52915 -14.29194 -13.82846 -13.16941 -13.06985 -12.93298 -12.82946 -12.63532 -12.50389 -11.75161 -11.74343 -11.36908 -11.32276 -11.16255 -10.64342 -10.29987 -9.82282 -8.70096 -8.56325 -8.35576 -6.13601 -0.14773 0.18149 0.49435 0.60328 1.34648 1.38982 1.42433 1.52478 1.64183 2.25611 2.37543 2.74424 2.99588 3.16973 3.36478 3.48901 3.74736 3.93897 4.17658 4.21922 4.23765 4.45981 4.56666 4.76507 5.04958 5.05307 5.32223 5.43193 5.67633 6.01288 6.20035 6.38202 7.06595 7.09278 8.73687 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.002582 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.892677 B =10841.541251 C =12418.287022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.087 0.913 9 S -0.141 6.141 10 C -0.121 4.121 11 C 0.536 3.464 12 O -0.556 6.556 13 N -0.511 5.511 14 N -0.537 5.537 15 C 0.260 3.740 16 C -0.241 4.241 17 C 0.163 3.837 18 F -0.135 7.135 19 C -0.198 4.198 20 C 0.000 4.000 21 C -0.189 4.189 22 Br -0.045 7.045 23 H 0.271 0.729 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.438 0.562 27 H 0.433 0.567 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.270 -25.807 -0.002 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.693 4.693 8 H 0.105 0.895 9 S 0.086 5.914 10 C -0.273 4.273 11 C 0.323 3.677 12 O -0.432 6.432 13 N -0.261 5.261 14 N -0.262 5.262 15 C 0.152 3.848 16 C -0.266 4.266 17 C 0.143 3.857 18 F -0.113 7.113 19 C -0.220 4.220 20 C -0.020 4.020 21 C -0.274 4.274 22 Br 0.040 6.960 23 H 0.080 0.920 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.283 0.717 27 H 0.279 0.721 28 H 0.167 0.833 29 H 0.187 0.813 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.544 -25.932 0.000 27.632 hybrid contribution 1.965 1.532 -0.001 2.492 sum 11.509 -24.400 -0.001 26.978 Atomic orbital electron populations 1.70181 1.07976 1.28581 1.48053 1.26112 0.95934 1.03309 0.93761 0.84908 0.78729 0.76387 0.77944 1.17841 1.20115 1.20126 1.23256 0.95546 0.91758 1.58751 0.89472 1.85667 1.09635 0.98992 1.97098 1.23269 1.04224 0.91808 1.08020 1.20371 0.86045 0.85683 0.75638 1.90733 1.16921 1.85427 1.50140 1.44740 1.10061 0.94485 1.76782 1.43856 1.08075 0.93022 1.81252 1.17147 0.89148 0.85106 0.93404 1.20412 0.90215 1.00622 1.15307 1.17503 0.76830 0.93998 0.97402 1.91531 1.30726 1.95742 1.93292 1.21219 0.96216 0.95723 1.08822 1.21025 0.91116 0.98585 0.91278 1.21282 0.91652 0.93534 1.20979 1.96757 1.05365 1.95800 1.98079 0.92001 0.86015 0.86022 0.71697 0.72100 0.83277 0.81299 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.80 13.22 21.65 0.29 -54.51 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -29.88 9.50 67.96 0.65 -29.23 16 8 H 0.09 4.39 7.80 -2.91 -0.02 4.36 16 9 S -0.14 -7.44 20.57 -56.49 -1.16 -8.61 16 10 C -0.12 -4.36 6.16 71.24 0.44 -3.93 16 11 C 0.54 18.56 7.96 87.66 0.70 19.26 16 12 O -0.56 -24.43 15.70 -3.02 -0.05 -24.48 16 13 N -0.51 -12.78 6.22 -173.53 -1.08 -13.86 16 14 N -0.54 -13.36 6.40 -51.34 -0.33 -13.69 16 15 C 0.26 5.25 6.71 38.21 0.26 5.51 16 16 C -0.24 -4.14 9.46 22.44 0.21 -3.92 16 17 C 0.16 2.53 7.30 22.36 0.16 2.69 16 18 F -0.13 -2.24 17.27 44.97 0.78 -1.46 16 19 C -0.20 -2.31 10.02 22.34 0.22 -2.09 16 20 C 0.00 0.00 9.78 22.26 0.22 0.22 16 21 C -0.19 -3.36 6.24 22.44 0.14 -3.22 16 22 Br -0.04 -0.86 32.11 -20.37 -0.65 -1.51 16 23 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 25 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 26 H 0.44 7.69 6.61 -213.32 -1.41 6.28 16 27 H 0.43 12.12 6.39 -213.32 -1.36 10.76 16 28 H 0.15 2.12 6.20 -2.91 -0.02 2.10 16 29 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -72.05 308.70 1.73 -70.32 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -1.55 Total: 16.79 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.46 Total: -13.49 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.12 Total: -82.06 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.78 Total: -1.46 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.16 Total: -8.61 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.65 Total: -1.51 kcal Total: -72.05 1.73 -70.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557046461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.981 kcal (2) G-P(sol) polarization free energy of solvation -72.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds