Wall clock time and date at job start Wed Apr 1 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31120 * 1 3 3 Br 1.89106 * 119.99557 * 2 1 4 4 C 1.50697 * 120.00382 * 179.97438 * 2 1 3 5 5 N 1.46897 * 109.46987 * 114.99754 * 4 2 1 6 6 C 1.48527 * 111.00393 * 287.40031 * 5 4 2 7 7 C 1.54944 * 103.23085 * 200.27940 * 6 5 4 8 8 C 1.54599 * 102.91756 * 37.41118 * 7 6 5 9 9 H 1.08997 * 110.38988 * 97.00441 * 8 7 6 10 10 N 1.46496 * 110.30604 * 219.12712 * 8 7 6 11 11 C 1.34777 * 120.00271 * 270.71466 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47405 * 90.00153 * 19 17 15 21 21 H 1.48505 * 109.47032 * 209.99913 * 19 17 15 22 22 H 1.48497 * 109.47409 * 329.99921 * 19 17 15 23 23 C 1.47904 * 111.00193 * 170.00171 * 5 4 2 24 24 H 1.08004 * 119.99648 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00581 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46966 * 355.00032 * 4 2 1 27 27 H 1.08999 * 109.47003 * 234.99933 * 4 2 1 28 28 H 1.09005 * 110.66646 * 318.71254 * 6 5 4 29 29 H 1.09003 * 110.67173 * 81.67479 * 6 5 4 30 30 H 1.09001 * 110.72208 * 279.05810 * 7 6 5 31 31 H 1.09001 * 110.72180 * 155.76850 * 7 6 5 32 32 H 0.97005 * 120.00266 * 90.72049 * 10 8 7 33 33 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 34 34 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 35 35 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.91396 * 26.48939 * 23 5 4 37 37 H 1.09003 * 110.07916 * 265.29166 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2566 1.6378 0.0000 4 6 2.0648 -1.3050 0.0006 5 7 2.8164 -1.4369 -1.2546 6 6 1.9055 -1.7169 -2.3938 7 6 2.8482 -2.3307 -3.4592 8 6 3.8201 -3.1828 -2.6110 9 1 3.4982 -4.2241 -2.5960 10 7 5.1818 -3.0800 -3.1412 11 6 5.6032 -3.9416 -4.0881 12 8 4.8548 -4.8018 -4.5015 13 6 7.0042 -3.8362 -4.6332 14 16 7.2649 -5.1221 -5.8800 15 6 8.9319 -4.7754 -6.3333 16 1 9.4622 -3.9621 -5.8601 17 6 9.5639 -5.5481 -7.2977 18 7 8.9181 -6.5401 -7.8732 19 14 11.3314 -5.1808 -7.7777 20 1 12.2519 -5.9572 -6.9087 21 1 11.5489 -5.5637 -9.1960 22 1 11.5986 -3.7297 -7.6102 23 6 3.7511 -2.5817 -1.1949 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.3599 -2.1316 0.0905 27 1 2.7569 -1.3245 0.8424 28 1 1.1354 -2.4319 -2.1038 29 1 1.4540 -0.7953 -2.7610 30 1 3.3872 -1.5485 -3.9938 31 1 2.2893 -2.9589 -4.1528 32 1 5.7804 -2.3918 -2.8108 33 1 7.7205 -3.9658 -3.8218 34 1 7.1442 -2.8556 -5.0883 35 1 9.3597 -7.0799 -8.5475 36 1 3.3799 -3.3278 -0.4924 37 1 4.7400 -2.2418 -0.8872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567886016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:06 Heat of formation + Delta-G solvation = -7.858906 kcal Electronic energy + Delta-G solvation = -19532.821885 eV Core-core repulsion = 16290.141801 eV Total energy + Delta-G solvation = -3242.680083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 348.025 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99210 -38.50815 -35.70207 -33.70407 -32.42251 -31.15073 -30.04372 -29.55071 -27.91524 -25.74482 -25.40764 -21.63669 -21.22688 -20.33501 -19.85530 -17.85484 -16.70063 -16.62842 -15.89857 -15.57098 -15.32254 -14.82414 -14.79493 -14.42421 -14.05931 -13.56604 -13.13322 -13.08894 -12.73798 -12.51668 -12.33096 -12.09682 -11.80924 -11.63875 -11.58249 -11.29934 -11.05938 -11.01912 -10.97163 -10.75175 -10.40236 -9.80864 -9.49916 -9.39530 -9.06536 -8.94266 -8.78701 -8.23083 -6.49326 -6.21114 -3.91517 1.32599 1.44092 3.02965 3.08287 3.23016 3.28473 3.32648 3.58676 3.74496 4.15899 4.21187 4.32248 4.55900 4.78965 4.95869 4.99477 5.05882 5.08159 5.14132 5.15746 5.19929 5.37982 5.52179 5.58209 5.62319 5.67903 5.73043 5.89428 5.91613 6.02668 6.15904 6.46524 6.55713 6.67706 7.60379 7.72395 8.35982 8.61771 9.24350 10.86302 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.001927 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.014369 B =14527.651252 C =15236.512611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 Br -0.057 7.057 4 C 0.085 3.915 5 N -0.508 5.508 6 C 0.037 3.963 7 C -0.134 4.134 8 C 0.140 3.860 9 H 0.096 0.904 10 N -0.729 5.729 11 C 0.533 3.467 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.031 3.969 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.056 0.944 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.810 16.336 20.092 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.187 4.187 3 Br 0.027 6.973 4 C -0.044 4.044 5 N -0.232 5.232 6 C -0.091 4.091 7 C -0.173 4.173 8 C 0.033 3.967 9 H 0.114 0.886 10 N -0.384 5.384 11 C 0.320 3.680 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.097 4.097 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.235 0.765 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.409 15.804 19.201 30.941 hybrid contribution 1.574 0.470 0.504 1.718 sum -16.835 16.275 19.705 30.603 Atomic orbital electron populations 1.24166 0.94045 1.03669 0.96805 1.23962 0.95726 0.92945 1.06071 1.96750 1.77412 1.25669 1.97455 1.21367 0.96776 0.92296 0.94007 1.64755 1.15732 1.39997 1.02674 1.23273 0.94533 1.00083 0.91235 1.22951 0.97182 0.99619 0.97548 1.21664 0.83108 1.00446 0.91459 0.88647 1.46089 1.14052 1.35720 1.42537 1.20333 0.89089 0.80346 0.78279 1.90693 1.56323 1.34472 1.57770 1.23532 0.95097 1.07024 1.04733 1.85379 1.16907 1.37170 1.43988 1.22868 0.98255 1.20158 1.27022 0.90921 1.24993 0.98917 0.94511 0.95200 1.70019 1.37010 1.17789 1.25506 0.86167 0.82759 0.78725 0.77843 1.20279 1.20761 1.19684 1.23120 0.98396 0.91742 0.96444 0.86392 0.86857 0.92564 0.89123 0.93510 0.89800 0.89977 0.90210 0.76504 0.89220 0.89181 0.92201 0.92588 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 14.00 28.98 0.41 -0.38 16 2 C -0.11 -0.75 5.51 -36.06 -0.20 -0.95 16 3 Br -0.06 -0.47 33.73 -68.01 -2.29 -2.77 16 4 C 0.08 0.58 5.00 -4.98 -0.02 0.56 16 5 N -0.51 -4.28 5.23 -231.89 -1.21 -5.49 16 6 C 0.04 0.31 6.12 -1.90 -0.01 0.30 16 7 C -0.13 -1.44 6.78 -24.86 -0.17 -1.61 16 8 C 0.14 1.58 3.34 -66.58 -0.22 1.36 16 9 H 0.10 1.24 7.56 -51.93 -0.39 0.85 16 10 N -0.73 -9.53 5.06 -52.50 -0.27 -9.80 16 11 C 0.53 9.75 7.85 -10.98 -0.09 9.67 16 12 O -0.52 -11.52 15.51 5.56 0.09 -11.43 16 13 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 15 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 19 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.03 0.27 6.43 -2.76 -0.02 0.25 16 24 H 0.12 0.46 7.84 -52.48 -0.41 0.05 16 25 H 0.11 0.54 8.05 -52.48 -0.42 0.12 16 26 H 0.06 0.33 7.48 -51.93 -0.39 -0.06 16 27 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.05 0.36 7.81 -51.93 -0.41 -0.05 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.40 4.24 8.35 -40.82 -0.34 3.90 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 34 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 0.43 7.77 -51.93 -0.40 0.02 16 37 H 0.09 0.75 7.65 -51.93 -0.40 0.35 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -33.53 347.71 -10.09 -43.62 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.24 Total: 0.15 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 0.10 Total: -6.61 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.75 Total: -40.76 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.53 -10.09 -43.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.756 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds