Wall clock time and date at job start Wed Apr 1 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31120 * 1 3 3 Br 1.89106 * 119.99557 * 2 1 4 4 C 1.50697 * 120.00382 * 179.97438 * 2 1 3 5 5 N 1.46897 * 109.46987 * 114.99754 * 4 2 1 6 6 C 1.48527 * 111.00393 * 287.40031 * 5 4 2 7 7 C 1.54944 * 103.23085 * 200.27940 * 6 5 4 8 8 C 1.54599 * 102.91756 * 37.41118 * 7 6 5 9 9 H 1.08997 * 110.38988 * 97.00441 * 8 7 6 10 10 N 1.46496 * 110.30604 * 219.12712 * 8 7 6 11 11 C 1.34777 * 120.00271 * 270.71466 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47405 * 90.00153 * 19 17 15 21 21 H 1.48505 * 109.47032 * 209.99913 * 19 17 15 22 22 H 1.48497 * 109.47409 * 329.99921 * 19 17 15 23 23 C 1.47904 * 111.00193 * 170.00171 * 5 4 2 24 24 H 1.08004 * 119.99648 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00581 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46966 * 355.00032 * 4 2 1 27 27 H 1.08999 * 109.47003 * 234.99933 * 4 2 1 28 28 H 1.09005 * 110.66646 * 318.71254 * 6 5 4 29 29 H 1.09003 * 110.67173 * 81.67479 * 6 5 4 30 30 H 1.09001 * 110.72208 * 279.05810 * 7 6 5 31 31 H 1.09001 * 110.72180 * 155.76850 * 7 6 5 32 32 H 0.97005 * 120.00266 * 90.72049 * 10 8 7 33 33 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 34 34 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 35 35 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.91396 * 26.48939 * 23 5 4 37 37 H 1.09003 * 110.07916 * 265.29166 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2566 1.6378 0.0000 4 6 2.0648 -1.3050 0.0006 5 7 2.8164 -1.4369 -1.2546 6 6 1.9055 -1.7169 -2.3938 7 6 2.8482 -2.3307 -3.4592 8 6 3.8201 -3.1828 -2.6110 9 1 3.4982 -4.2241 -2.5960 10 7 5.1818 -3.0800 -3.1412 11 6 5.6032 -3.9416 -4.0881 12 8 4.8548 -4.8018 -4.5015 13 6 7.0042 -3.8362 -4.6332 14 16 7.2649 -5.1221 -5.8800 15 6 8.9319 -4.7754 -6.3333 16 1 9.4622 -3.9621 -5.8601 17 6 9.5639 -5.5481 -7.2977 18 7 8.9181 -6.5401 -7.8732 19 14 11.3314 -5.1808 -7.7777 20 1 12.2519 -5.9572 -6.9087 21 1 11.5489 -5.5637 -9.1960 22 1 11.5986 -3.7297 -7.6102 23 6 3.7511 -2.5817 -1.1949 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.3599 -2.1316 0.0905 27 1 2.7569 -1.3245 0.8424 28 1 1.1354 -2.4319 -2.1038 29 1 1.4540 -0.7953 -2.7610 30 1 3.3872 -1.5485 -3.9938 31 1 2.2893 -2.9589 -4.1528 32 1 5.7804 -2.3918 -2.8108 33 1 7.7205 -3.9658 -3.8218 34 1 7.1442 -2.8556 -5.0883 35 1 9.3597 -7.0799 -8.5475 36 1 3.3799 -3.3278 -0.4924 37 1 4.7400 -2.2418 -0.8872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567886016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:06 Heat of formation + Delta-G solvation = -31.706994 kcal Electronic energy + Delta-G solvation = -19533.856015 eV Core-core repulsion = 16290.141801 eV Total energy + Delta-G solvation = -3243.714214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 348.025 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05831 -39.60554 -36.46110 -34.72164 -34.57442 -32.08308 -30.78793 -30.55484 -28.91314 -27.64721 -26.33578 -22.49448 -22.15606 -21.55406 -20.35344 -19.82275 -17.98835 -17.60291 -16.89890 -16.86129 -16.40156 -16.24666 -16.07045 -15.64540 -15.04897 -14.77023 -14.52932 -14.23470 -13.78529 -13.65236 -13.34896 -13.16032 -12.91340 -12.84220 -12.72171 -12.62946 -12.42318 -12.13856 -11.91215 -11.83483 -11.71626 -11.13995 -10.97998 -10.92326 -10.27328 -10.11768 -9.99447 -9.44020 -8.66026 -8.34444 -6.12212 0.87399 0.95799 1.27534 1.42681 1.47386 1.58027 1.61772 2.25758 2.30258 2.98096 2.99687 3.32448 3.49473 3.63423 3.83817 4.00226 4.13161 4.26011 4.30563 4.34412 4.34601 4.52463 4.57957 4.68190 4.71359 4.79099 4.88324 5.00528 5.11639 5.16678 5.26942 5.42298 5.53304 5.79820 5.95425 6.20210 6.51765 7.06991 7.25654 8.74726 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.001927 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.014369 B =14527.651252 C =15236.512611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 Br -0.079 7.079 4 C 0.086 3.914 5 N -0.515 5.515 6 C 0.047 3.953 7 C -0.133 4.133 8 C 0.136 3.864 9 H 0.078 0.922 10 N -0.704 5.704 11 C 0.536 3.464 12 O -0.564 6.564 13 C -0.130 4.130 14 S -0.151 6.151 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.259 1.259 23 C 0.041 3.959 24 H 0.138 0.862 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.416 0.584 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.637 17.866 21.753 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.206 4.206 3 Br 0.005 6.995 4 C -0.043 4.043 5 N -0.240 5.240 6 C -0.080 4.080 7 C -0.172 4.172 8 C 0.030 3.970 9 H 0.096 0.904 10 N -0.358 5.358 11 C 0.322 3.678 12 O -0.442 6.442 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.694 4.694 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.087 4.087 24 H 0.155 0.845 25 H 0.136 0.864 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.253 0.747 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.248 17.383 20.912 32.749 hybrid contribution 1.376 0.050 0.081 1.379 sum -16.872 17.434 20.993 32.083 Atomic orbital electron populations 1.24406 0.93553 1.04835 0.94169 1.23971 0.96111 0.92093 1.08395 1.96736 1.78000 1.27168 1.97619 1.21399 0.97070 0.92721 0.93071 1.64759 1.16064 1.39719 1.03433 1.23170 0.94183 1.00199 0.90490 1.22876 0.97400 0.99019 0.97943 1.21810 0.81748 0.99997 0.93437 0.90376 1.45856 1.15114 1.34385 1.40470 1.20038 0.88086 0.80652 0.78993 1.90683 1.57164 1.36685 1.59694 1.23375 0.96991 1.04710 1.03022 1.85543 1.17749 1.41504 1.47552 1.23202 0.98350 1.20482 1.27337 0.89969 1.26128 1.04035 0.94079 0.94971 1.70182 1.39256 1.19057 1.26264 0.84954 0.76304 0.79191 0.77534 1.19271 1.20304 1.18255 1.23033 0.99144 0.92140 0.94378 0.84464 0.86409 0.91004 0.88838 0.92239 0.89642 0.90978 0.91562 0.74651 0.87189 0.87436 0.92003 0.91069 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 14.00 67.66 0.95 -0.07 16 2 C -0.13 -1.47 5.51 25.53 0.14 -1.32 16 3 Br -0.08 -1.21 33.73 -20.37 -0.69 -1.90 16 4 C 0.09 0.94 5.00 85.56 0.43 1.37 16 5 N -0.52 -7.43 5.23 -887.58 -4.64 -12.07 16 6 C 0.05 0.71 6.12 86.65 0.53 1.24 16 7 C -0.13 -2.76 6.78 31.80 0.22 -2.55 16 8 C 0.14 2.92 3.34 45.87 0.15 3.07 16 9 H 0.08 2.01 7.56 -2.39 -0.02 1.99 16 10 N -0.70 -17.46 5.06 -438.39 -2.22 -19.68 16 11 C 0.54 19.48 7.85 87.66 0.69 20.17 16 12 O -0.56 -25.68 15.51 -3.02 -0.05 -25.73 16 13 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 14 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 15 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 16 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.72 5.49 84.86 0.47 1.19 16 18 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 19 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 C 0.04 0.61 6.43 86.44 0.56 1.16 16 24 H 0.14 0.56 7.84 -2.91 -0.02 0.54 16 25 H 0.12 0.83 8.05 -2.91 -0.02 0.81 16 26 H 0.07 0.58 7.48 -2.39 -0.02 0.56 16 27 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.06 0.76 7.81 -2.38 -0.02 0.74 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.42 7.83 8.35 -92.70 -0.77 7.06 16 33 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 34 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 36 H 0.07 0.88 7.77 -2.39 -0.02 0.86 16 37 H 0.10 1.33 7.65 -2.39 -0.02 1.31 16 Total: -1.00 -74.66 347.71 -0.94 -75.60 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.30 Total: 14.41 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.21 Total: -11.03 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -6.58 Total: -87.57 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Atomic # 35 Polarization: -1.21 SS G_CDS: -0.69 Total: -1.90 kcal Total: -74.66 -0.94 -75.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.893 kcal (2) G-P(sol) polarization free energy of solvation -74.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds