Wall clock time and date at job start Wed Apr 1 2020 04:53:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50699 * 119.99828 * 2 1
4 4 C 1.52994 * 109.47107 * 125.00334 * 3 2 1
5 5 C 1.53004 * 109.47359 * 180.02562 * 4 3 2
6 6 N 1.46496 * 109.47294 * 179.97438 * 5 4 3
7 7 C 1.36746 * 127.13732 * 94.70099 * 6 5 4
8 8 C 1.50703 * 126.34436 * 0.02562 * 7 6 5
9 9 H 1.08998 * 109.53750 * 359.61808 * 8 7 6
10 10 C 1.53122 * 109.49889 * 119.71654 * 8 7 6
11 11 C 1.53123 * 109.15587 * 177.59224 * 10 8 7
12 12 C 1.53032 * 109.28123 * 302.34847 * 11 10 8
13 13 N 1.46843 * 109.52541 * 59.17983 * 12 11 10
14 14 C 1.46847 * 111.19679 * 298.25887 * 13 12 11
15 15 N 1.30293 * 107.30249 * 179.75585 * 7 6 5
16 16 N 1.28520 * 110.05858 * 0.23768 * 15 7 6
17 17 C 1.31217 * 109.85828 * 0.02562 * 16 15 7
18 18 N 1.38583 * 126.47358 * 180.02562 * 17 16 15
19 19 C 1.46902 * 111.00149 * 57.47877 * 18 17 16
20 20 C 1.46901 * 110.99926 * 293.52958 * 18 17 16
21 21 H 1.09008 * 109.47136 * 309.99454 * 20 18 17
22 22 C 1.52996 * 109.47478 * 69.99476 * 20 18 17
23 23 C 1.50699 * 109.47104 * 189.99809 * 20 18 17
24 24 H 1.08004 * 120.00219 * 0.02562 * 23 20 18
25 25 C 1.37878 * 120.00184 * 179.97438 * 23 20 18
26 26 N 1.31516 * 120.00236 * 180.02562 * 25 23 20
27 27 Si 1.86800 * 119.99704 * 0.02562 * 25 23 20
28 28 H 1.48494 * 109.47219 * 89.99673 * 27 25 23
29 29 H 1.48503 * 109.47086 * 209.99250 * 27 25 23
30 30 H 1.48497 * 109.47325 * 329.99186 * 27 25 23
31 31 H 1.08003 * 119.99871 * 180.02562 * 1 2 3
32 32 H 1.07994 * 120.00070 * 0.02562 * 1 2 3
33 33 H 1.08000 * 120.00025 * 180.02562 * 2 1 3
34 34 H 1.08996 * 109.47286 * 5.00223 * 3 2 1
35 35 H 1.09004 * 109.46991 * 244.99884 * 3 2 1
36 36 H 1.09004 * 109.47621 * 60.00157 * 4 3 2
37 37 H 1.09000 * 109.47541 * 299.99716 * 4 3 2
38 38 H 1.08996 * 109.47209 * 59.99783 * 5 4 3
39 39 H 1.09004 * 109.46816 * 299.99597 * 5 4 3
40 40 H 1.08998 * 109.52258 * 57.68952 * 10 8 7
41 41 H 1.08996 * 109.52263 * 297.49537 * 10 8 7
42 42 H 1.08997 * 109.50051 * 182.40015 * 11 10 8
43 43 H 1.09006 * 109.53252 * 62.30750 * 11 10 8
44 44 H 1.09002 * 109.46113 * 299.16013 * 12 11 10
45 45 H 1.08997 * 109.45833 * 179.19277 * 12 11 10
46 46 H 1.00892 * 111.00165 * 62.35871 * 13 12 11
47 47 H 1.09006 * 109.46494 * 181.76069 * 14 13 12
48 48 H 1.09003 * 109.46361 * 301.72411 * 14 13 12
49 49 H 1.08999 * 109.46891 * 65.53466 * 19 18 17
50 50 H 1.09002 * 109.47315 * 185.54425 * 19 18 17
51 51 H 1.09002 * 109.46844 * 305.54089 * 19 18 17
52 52 H 1.09001 * 109.46871 * 179.97438 * 22 20 18
53 53 H 1.08993 * 109.47464 * 300.00320 * 22 20 18
54 54 H 1.09003 * 109.46876 * 60.00359 * 22 20 18
55 55 H 0.96999 * 119.99814 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 6 3.0350 1.3331 1.1815
5 6 3.7995 2.6584 1.1820
6 7 4.7294 2.6854 2.3137
7 6 6.0518 2.3375 2.3041
8 6 6.8382 1.8488 1.1150
9 1 6.1878 1.8035 0.2415
10 6 7.9981 2.8097 0.8395
11 6 8.8268 2.2742 -0.3316
12 6 9.3269 0.8676 0.0047
13 7 8.1800 -0.0133 0.2592
14 6 7.3961 0.4545 1.4094
15 7 6.5073 2.5124 3.5122
16 7 5.5688 2.9390 4.2797
17 6 4.4548 3.0597 3.5968
18 7 3.2320 3.4922 4.0849
19 6 3.3451 4.8327 4.6752
20 6 2.6838 2.5346 5.0547
21 1 2.7104 1.5313 4.6294
22 6 3.5216 2.5685 6.3344
23 6 1.2592 2.9059 5.3769
24 1 0.8062 3.7669 4.9078
25 6 0.5338 2.1459 6.2696
26 7 -0.7096 2.4696 6.5504
27 14 1.3170 0.6563 7.0803
28 1 1.9725 1.0697 8.3470
29 1 0.2703 -0.3560 7.3721
30 1 2.3305 0.0711 6.1664
31 1 -0.5400 -0.9353 0.0004
32 1 -0.5400 0.9352 -0.0004
33 1 1.8500 -0.9353 -0.0004
34 1 1.3585 2.1316 0.0896
35 1 2.6213 1.4026 -0.9314
36 1 3.7400 0.5066 1.0920
37 1 2.4773 1.2356 2.1130
38 1 3.0944 3.4846 1.2718
39 1 4.3573 2.7563 0.2506
40 1 8.6272 2.8851 1.7264
41 1 7.6037 3.7938 0.5867
42 1 9.6786 2.9316 -0.5052
43 1 8.2081 2.2357 -1.2283
44 1 9.9573 0.9090 0.8931
45 1 9.9053 0.4779 -0.8329
46 1 7.6007 -0.0992 -0.5623
47 1 6.5720 -0.2353 1.5921
48 1 8.0354 0.4979 2.2912
49 1 3.5916 5.5534 3.8955
50 1 2.3970 5.1073 5.1375
51 1 4.1309 4.8319 5.4306
52 1 3.1144 1.8582 7.0540
53 1 4.5519 2.2999 6.1014
54 1 3.4949 3.5717 6.7597
55 1 -1.2198 1.9351 7.1788
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001574915395.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:53:10
Heat of formation + Delta-G solvation = 86.212976 kcal
Electronic energy + Delta-G solvation = -32679.715678 eV
Core-core repulsion = 28752.733219 eV
Total energy + Delta-G solvation = -3926.982459 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-44.06458 -39.88295 -39.06847 -37.70173 -35.55824 -34.88723 -33.58342 -32.39178
-32.14534 -31.59645 -29.58818 -27.54852 -27.27707 -26.83007 -24.88213 -24.48478
-23.56859 -23.07205 -22.00962 -21.19125 -20.70700 -20.60410 -18.85654 -18.02925
-17.62881 -16.99552 -16.97597 -16.68356 -16.44955 -16.01991 -15.78541 -15.53218
-15.36232 -15.31738 -15.16906 -14.68460 -14.40400 -14.09437 -14.07824 -13.79826
-13.59509 -13.44375 -13.21683 -13.20289 -13.10034 -13.02244 -12.84426 -12.65825
-12.42030 -12.36901 -12.25773 -12.08584 -11.94492 -11.83863 -11.66013 -11.60260
-11.57083 -11.49445 -11.17470 -10.98267 -10.82977 -10.19559 -10.10907 -9.61220
-9.27832 -8.34810 -6.37055 0.69793 1.23518 1.26218 1.29053 1.36483
1.45254 1.77697 2.24024 2.87448 3.00286 3.10504 3.48516 3.53843
3.65856 3.73643 3.88856 3.98705 4.05342 4.06285 4.14523 4.22468
4.28721 4.33375 4.35608 4.37843 4.41275 4.48333 4.49686 4.54532
4.55000 4.59313 4.72950 4.79432 4.80212 4.91636 4.93752 4.94752
4.98504 5.04303 5.05381 5.05991 5.12081 5.16831 5.20841 5.25527
5.25928 5.36995 5.49253 5.66511 5.76851 5.83774 5.90121 6.01187
6.18051 6.52914 6.56642 6.67352 7.26599 7.72727 8.80683
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.009844 B = 0.003798 C = 0.003170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2843.598020 B = 7370.521489 C = 8829.427810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.162 4.162
3 C -0.080 4.080
4 C -0.122 4.122
5 C 0.111 3.889
6 N -0.461 5.461
7 C 0.190 3.810
8 C -0.021 4.021
9 H 0.111 0.889
10 C -0.106 4.106
11 C -0.145 4.145
12 C 0.053 3.947
13 N -0.682 5.682
14 C 0.078 3.922
15 N -0.322 5.322
16 N -0.345 5.345
17 C 0.349 3.651
18 N -0.456 5.456
19 C 0.048 3.952
20 C 0.210 3.790
21 H 0.018 0.982
22 C -0.179 4.179
23 C -0.499 4.499
24 H 0.058 0.942
25 C 0.033 3.967
26 N -0.934 5.934
27 Si 0.932 3.068
28 H -0.269 1.269
29 H -0.291 1.291
30 H -0.268 1.268
31 H 0.102 0.898
32 H 0.094 0.906
33 H 0.115 0.885
34 H 0.066 0.934
35 H 0.104 0.896
36 H 0.073 0.927
37 H 0.037 0.963
38 H 0.096 0.904
39 H 0.131 0.869
40 H 0.056 0.944
41 H 0.063 0.937
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.063 0.937
45 H 0.095 0.905
46 H 0.353 0.647
47 H 0.069 0.931
48 H 0.063 0.937
49 H 0.072 0.928
50 H 0.079 0.921
51 H 0.035 0.965
52 H 0.034 0.966
53 H 0.058 0.942
54 H 0.060 0.940
55 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.074 -2.366 -21.259 26.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.180 4.180
3 C -0.117 4.117
4 C -0.160 4.160
5 C -0.011 4.011
6 N -0.152 5.152
7 C -0.079 4.079
8 C -0.044 4.044
9 H 0.129 0.871
10 C -0.144 4.144
11 C -0.184 4.184
12 C -0.077 4.077
13 N -0.310 5.310
14 C -0.053 4.053
15 N -0.161 5.161
16 N -0.189 5.189
17 C -0.008 4.008
18 N -0.181 5.181
19 C -0.099 4.099
20 C 0.103 3.897
21 H 0.035 0.965
22 C -0.238 4.238
23 C -0.537 4.537
24 H 0.076 0.924
25 C -0.166 4.166
26 N -0.573 5.573
27 Si 0.761 3.239
28 H -0.196 1.196
29 H -0.219 1.219
30 H -0.193 1.193
31 H 0.121 0.879
32 H 0.112 0.888
33 H 0.133 0.867
34 H 0.085 0.915
35 H 0.123 0.877
36 H 0.092 0.908
37 H 0.056 0.944
38 H 0.114 0.886
39 H 0.149 0.851
40 H 0.075 0.925
41 H 0.082 0.918
42 H 0.101 0.899
43 H 0.099 0.901
44 H 0.081 0.919
45 H 0.114 0.886
46 H 0.172 0.828
47 H 0.087 0.913
48 H 0.082 0.918
49 H 0.091 0.909
50 H 0.098 0.902
51 H 0.054 0.946
52 H 0.053 0.947
53 H 0.077 0.923
54 H 0.079 0.921
55 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 15.899 -2.796 -20.041 25.734
hybrid contribution -1.339 0.169 0.645 1.496
sum 14.560 -2.627 -19.395 24.394
Atomic orbital electron populations
1.24021 0.96476 1.02272 1.01139 1.23041 0.96112 0.98957 0.99868
1.20608 0.97624 0.95612 0.97873 1.21782 0.98426 0.96329 0.99463
1.22160 0.91871 1.00272 0.86769 1.46592 1.10441 1.48622 1.09595
1.25208 0.81978 1.02558 0.98111 1.20558 0.95505 0.97746 0.90609
0.87086 1.21554 0.95579 0.97678 0.99623 1.22216 1.00536 0.98355
0.97272 1.22129 0.93140 0.90179 1.02216 1.60664 1.11736 1.50158
1.08475 1.21846 0.97134 0.91376 0.94964 1.73833 1.24022 1.17954
1.00323 1.74572 0.97960 1.20178 1.26141 1.22718 0.92755 1.01485
0.83884 1.59002 1.15481 1.04549 1.39100 1.22271 1.02273 0.86845
0.98511 1.19434 0.93157 0.90299 0.86835 0.96455 1.22752 0.99917
1.01467 0.99673 1.20906 0.94978 1.13336 1.24522 0.92391 1.25422
0.94974 0.99420 0.96810 1.69957 1.10155 1.41109 1.36117 0.86117
0.77588 0.80377 0.79813 1.19565 1.21856 1.19323 0.87927 0.88772
0.86662 0.91479 0.87748 0.90821 0.94365 0.88599 0.85149 0.92529
0.91831 0.89880 0.90061 0.91870 0.88626 0.82813 0.91271 0.91825
0.90893 0.90183 0.94646 0.94707 0.92285 0.92116 0.92242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -4.44 14.32 67.78 0.97 -3.47 16
2 C -0.16 -3.32 9.52 25.65 0.24 -3.07 16
3 C -0.08 -1.44 5.66 29.85 0.17 -1.27 16
4 C -0.12 -2.81 5.52 30.59 0.17 -2.64 16
5 C 0.11 2.41 5.97 86.38 0.52 2.93 16
6 N -0.46 -13.85 2.81 -514.85 -1.45 -15.29 16
7 C 0.19 5.42 6.58 137.64 0.91 6.32 16
8 C -0.02 -0.38 2.70 -11.49 -0.03 -0.42 16
9 H 0.11 1.38 6.84 -2.39 -0.02 1.37 16
10 C -0.11 -1.72 5.27 30.68 0.16 -1.56 16
11 C -0.14 -1.44 6.08 30.65 0.19 -1.26 16
12 C 0.05 0.60 6.55 86.32 0.57 1.17 16
13 N -0.68 -9.46 6.87 -514.02 -3.53 -12.99 16
14 C 0.08 1.48 5.82 86.32 0.50 1.98 16
15 N -0.32 -11.81 12.18 -49.53 -0.60 -12.42 16
16 N -0.35 -14.31 9.84 -58.00 -0.57 -14.88 16
17 C 0.35 13.51 6.27 260.11 1.63 15.14 16
18 N -0.46 -19.06 4.74 -710.99 -3.37 -22.42 16
19 C 0.05 1.86 8.53 127.69 1.09 2.95 16
20 C 0.21 10.15 1.87 44.17 0.08 10.23 16
21 H 0.02 0.91 7.11 -2.38 -0.02 0.89 16
22 C -0.18 -8.42 7.88 71.98 0.57 -7.86 16
23 C -0.50 -27.53 8.41 25.60 0.22 -27.32 16
24 H 0.06 3.46 7.42 -2.91 -0.02 3.44 16
25 C 0.03 1.88 5.45 84.65 0.46 2.34 16
26 N -0.93 -56.44 13.96 21.45 0.30 -56.14 16
27 Si 0.93 45.97 24.37 68.60 1.67 47.64 16
28 H -0.27 -12.89 6.87 99.48 0.68 -12.21 16
29 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16
30 H -0.27 -13.03 6.53 99.48 0.65 -12.38 16
31 H 0.10 2.04 8.06 -2.91 -0.02 2.02 16
32 H 0.09 2.11 7.84 -2.91 -0.02 2.08 16
33 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16
34 H 0.07 1.33 7.79 -2.39 -0.02 1.31 16
35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16
37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
38 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16
39 H 0.13 1.68 7.04 -2.39 -0.02 1.66 16
40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
43 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16
44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
46 H 0.35 3.38 8.86 -89.70 -0.79 2.59 16
47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16
48 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
50 H 0.08 3.31 6.65 -2.39 -0.02 3.30 16
51 H 0.03 1.38 6.59 -2.39 -0.02 1.37 16
52 H 0.03 1.67 3.27 -2.39 -0.01 1.66 16
53 H 0.06 2.73 6.00 -2.39 -0.01 2.72 16
54 H 0.06 2.76 6.54 -2.39 -0.02 2.75 16
55 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
Total: -1.00 -70.75 419.87 0.85 -69.90
By element:
Atomic # 1 Polarization: 22.42 SS G_CDS: -0.01 Total: 22.41 kcal
Atomic # 6 Polarization: -14.21 SS G_CDS: 8.40 Total: -5.80 kcal
Atomic # 7 Polarization: -124.93 SS G_CDS: -9.22 Total: -134.15 kcal
Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal
Total: -70.75 0.85 -69.90 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001574915395.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.110 kcal
(2) G-P(sol) polarization free energy of solvation -70.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds