Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99828 * 2 1 4 4 C 1.52994 * 109.47107 * 125.00334 * 3 2 1 5 5 C 1.53004 * 109.47359 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47294 * 179.97438 * 5 4 3 7 7 C 1.36746 * 127.13732 * 94.70099 * 6 5 4 8 8 C 1.50703 * 126.34436 * 0.02562 * 7 6 5 9 9 H 1.08998 * 109.53750 * 359.61808 * 8 7 6 10 10 C 1.53122 * 109.49889 * 119.71654 * 8 7 6 11 11 C 1.53123 * 109.15587 * 177.59224 * 10 8 7 12 12 C 1.53032 * 109.28123 * 302.34847 * 11 10 8 13 13 N 1.46843 * 109.52541 * 59.17983 * 12 11 10 14 14 C 1.46847 * 111.19679 * 298.25887 * 13 12 11 15 15 N 1.30293 * 107.30249 * 179.75585 * 7 6 5 16 16 N 1.28520 * 110.05858 * 0.23768 * 15 7 6 17 17 C 1.31217 * 109.85828 * 0.02562 * 16 15 7 18 18 N 1.38583 * 126.47358 * 180.02562 * 17 16 15 19 19 C 1.46902 * 111.00149 * 57.47877 * 18 17 16 20 20 C 1.46901 * 110.99926 * 293.52958 * 18 17 16 21 21 H 1.09008 * 109.47136 * 309.99454 * 20 18 17 22 22 C 1.52996 * 109.47478 * 69.99476 * 20 18 17 23 23 C 1.50699 * 109.47104 * 189.99809 * 20 18 17 24 24 H 1.08004 * 120.00219 * 0.02562 * 23 20 18 25 25 C 1.37878 * 120.00184 * 179.97438 * 23 20 18 26 26 N 1.31516 * 120.00236 * 180.02562 * 25 23 20 27 27 Si 1.86800 * 119.99704 * 0.02562 * 25 23 20 28 28 H 1.48494 * 109.47219 * 89.99673 * 27 25 23 29 29 H 1.48503 * 109.47086 * 209.99250 * 27 25 23 30 30 H 1.48497 * 109.47325 * 329.99186 * 27 25 23 31 31 H 1.08003 * 119.99871 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00070 * 0.02562 * 1 2 3 33 33 H 1.08000 * 120.00025 * 180.02562 * 2 1 3 34 34 H 1.08996 * 109.47286 * 5.00223 * 3 2 1 35 35 H 1.09004 * 109.46991 * 244.99884 * 3 2 1 36 36 H 1.09004 * 109.47621 * 60.00157 * 4 3 2 37 37 H 1.09000 * 109.47541 * 299.99716 * 4 3 2 38 38 H 1.08996 * 109.47209 * 59.99783 * 5 4 3 39 39 H 1.09004 * 109.46816 * 299.99597 * 5 4 3 40 40 H 1.08998 * 109.52258 * 57.68952 * 10 8 7 41 41 H 1.08996 * 109.52263 * 297.49537 * 10 8 7 42 42 H 1.08997 * 109.50051 * 182.40015 * 11 10 8 43 43 H 1.09006 * 109.53252 * 62.30750 * 11 10 8 44 44 H 1.09002 * 109.46113 * 299.16013 * 12 11 10 45 45 H 1.08997 * 109.45833 * 179.19277 * 12 11 10 46 46 H 1.00892 * 111.00165 * 62.35871 * 13 12 11 47 47 H 1.09006 * 109.46494 * 181.76069 * 14 13 12 48 48 H 1.09003 * 109.46361 * 301.72411 * 14 13 12 49 49 H 1.08999 * 109.46891 * 65.53466 * 19 18 17 50 50 H 1.09002 * 109.47315 * 185.54425 * 19 18 17 51 51 H 1.09002 * 109.46844 * 305.54089 * 19 18 17 52 52 H 1.09001 * 109.46871 * 179.97438 * 22 20 18 53 53 H 1.08993 * 109.47464 * 300.00320 * 22 20 18 54 54 H 1.09003 * 109.46876 * 60.00359 * 22 20 18 55 55 H 0.96999 * 119.99814 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 6 3.7995 2.6584 1.1820 6 7 4.7294 2.6854 2.3137 7 6 6.0518 2.3375 2.3041 8 6 6.8382 1.8488 1.1150 9 1 6.1878 1.8035 0.2415 10 6 7.9981 2.8097 0.8395 11 6 8.8268 2.2742 -0.3316 12 6 9.3269 0.8676 0.0047 13 7 8.1800 -0.0133 0.2592 14 6 7.3961 0.4545 1.4094 15 7 6.5073 2.5124 3.5122 16 7 5.5688 2.9390 4.2797 17 6 4.4548 3.0597 3.5968 18 7 3.2320 3.4922 4.0849 19 6 3.3451 4.8327 4.6752 20 6 2.6838 2.5346 5.0547 21 1 2.7104 1.5313 4.6294 22 6 3.5216 2.5685 6.3344 23 6 1.2592 2.9059 5.3769 24 1 0.8062 3.7669 4.9078 25 6 0.5338 2.1459 6.2696 26 7 -0.7096 2.4696 6.5504 27 14 1.3170 0.6563 7.0803 28 1 1.9725 1.0697 8.3470 29 1 0.2703 -0.3560 7.3721 30 1 2.3305 0.0711 6.1664 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9352 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1316 0.0896 35 1 2.6213 1.4026 -0.9314 36 1 3.7400 0.5066 1.0920 37 1 2.4773 1.2356 2.1130 38 1 3.0944 3.4846 1.2718 39 1 4.3573 2.7563 0.2506 40 1 8.6272 2.8851 1.7264 41 1 7.6037 3.7938 0.5867 42 1 9.6786 2.9316 -0.5052 43 1 8.2081 2.2357 -1.2283 44 1 9.9573 0.9090 0.8931 45 1 9.9053 0.4779 -0.8329 46 1 7.6007 -0.0992 -0.5623 47 1 6.5720 -0.2353 1.5921 48 1 8.0354 0.4979 2.2912 49 1 3.5916 5.5534 3.8955 50 1 2.3970 5.1073 5.1375 51 1 4.1309 4.8319 5.4306 52 1 3.1144 1.8582 7.0540 53 1 4.5519 2.2999 6.1014 54 1 3.4949 3.5717 6.7597 55 1 -1.2198 1.9351 7.1788 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574915395.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = 86.212976 kcal Electronic energy + Delta-G solvation = -32679.715678 eV Core-core repulsion = 28752.733219 eV Total energy + Delta-G solvation = -3926.982459 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.06458 -39.88295 -39.06847 -37.70173 -35.55824 -34.88723 -33.58342 -32.39178 -32.14534 -31.59645 -29.58818 -27.54852 -27.27707 -26.83007 -24.88213 -24.48478 -23.56859 -23.07205 -22.00962 -21.19125 -20.70700 -20.60410 -18.85654 -18.02925 -17.62881 -16.99552 -16.97597 -16.68356 -16.44955 -16.01991 -15.78541 -15.53218 -15.36232 -15.31738 -15.16906 -14.68460 -14.40400 -14.09437 -14.07824 -13.79826 -13.59509 -13.44375 -13.21683 -13.20289 -13.10034 -13.02244 -12.84426 -12.65825 -12.42030 -12.36901 -12.25773 -12.08584 -11.94492 -11.83863 -11.66013 -11.60260 -11.57083 -11.49445 -11.17470 -10.98267 -10.82977 -10.19559 -10.10907 -9.61220 -9.27832 -8.34810 -6.37055 0.69793 1.23518 1.26218 1.29053 1.36483 1.45254 1.77697 2.24024 2.87448 3.00286 3.10504 3.48516 3.53843 3.65856 3.73643 3.88856 3.98705 4.05342 4.06285 4.14523 4.22468 4.28721 4.33375 4.35608 4.37843 4.41275 4.48333 4.49686 4.54532 4.55000 4.59313 4.72950 4.79432 4.80212 4.91636 4.93752 4.94752 4.98504 5.04303 5.05381 5.05991 5.12081 5.16831 5.20841 5.25527 5.25928 5.36995 5.49253 5.66511 5.76851 5.83774 5.90121 6.01187 6.18051 6.52914 6.56642 6.67352 7.26599 7.72727 8.80683 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.003798 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.598020 B = 7370.521489 C = 8829.427810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.080 4.080 4 C -0.122 4.122 5 C 0.111 3.889 6 N -0.461 5.461 7 C 0.190 3.810 8 C -0.021 4.021 9 H 0.111 0.889 10 C -0.106 4.106 11 C -0.145 4.145 12 C 0.053 3.947 13 N -0.682 5.682 14 C 0.078 3.922 15 N -0.322 5.322 16 N -0.345 5.345 17 C 0.349 3.651 18 N -0.456 5.456 19 C 0.048 3.952 20 C 0.210 3.790 21 H 0.018 0.982 22 C -0.179 4.179 23 C -0.499 4.499 24 H 0.058 0.942 25 C 0.033 3.967 26 N -0.934 5.934 27 Si 0.932 3.068 28 H -0.269 1.269 29 H -0.291 1.291 30 H -0.268 1.268 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.353 0.647 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.035 0.965 52 H 0.034 0.966 53 H 0.058 0.942 54 H 0.060 0.940 55 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 -2.366 -21.259 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.180 4.180 3 C -0.117 4.117 4 C -0.160 4.160 5 C -0.011 4.011 6 N -0.152 5.152 7 C -0.079 4.079 8 C -0.044 4.044 9 H 0.129 0.871 10 C -0.144 4.144 11 C -0.184 4.184 12 C -0.077 4.077 13 N -0.310 5.310 14 C -0.053 4.053 15 N -0.161 5.161 16 N -0.189 5.189 17 C -0.008 4.008 18 N -0.181 5.181 19 C -0.099 4.099 20 C 0.103 3.897 21 H 0.035 0.965 22 C -0.238 4.238 23 C -0.537 4.537 24 H 0.076 0.924 25 C -0.166 4.166 26 N -0.573 5.573 27 Si 0.761 3.239 28 H -0.196 1.196 29 H -0.219 1.219 30 H -0.193 1.193 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.172 0.828 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.054 0.946 52 H 0.053 0.947 53 H 0.077 0.923 54 H 0.079 0.921 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.899 -2.796 -20.041 25.734 hybrid contribution -1.339 0.169 0.645 1.496 sum 14.560 -2.627 -19.395 24.394 Atomic orbital electron populations 1.24021 0.96476 1.02272 1.01139 1.23041 0.96112 0.98957 0.99868 1.20608 0.97624 0.95612 0.97873 1.21782 0.98426 0.96329 0.99463 1.22160 0.91871 1.00272 0.86769 1.46592 1.10441 1.48622 1.09595 1.25208 0.81978 1.02558 0.98111 1.20558 0.95505 0.97746 0.90609 0.87086 1.21554 0.95579 0.97678 0.99623 1.22216 1.00536 0.98355 0.97272 1.22129 0.93140 0.90179 1.02216 1.60664 1.11736 1.50158 1.08475 1.21846 0.97134 0.91376 0.94964 1.73833 1.24022 1.17954 1.00323 1.74572 0.97960 1.20178 1.26141 1.22718 0.92755 1.01485 0.83884 1.59002 1.15481 1.04549 1.39100 1.22271 1.02273 0.86845 0.98511 1.19434 0.93157 0.90299 0.86835 0.96455 1.22752 0.99917 1.01467 0.99673 1.20906 0.94978 1.13336 1.24522 0.92391 1.25422 0.94974 0.99420 0.96810 1.69957 1.10155 1.41109 1.36117 0.86117 0.77588 0.80377 0.79813 1.19565 1.21856 1.19323 0.87927 0.88772 0.86662 0.91479 0.87748 0.90821 0.94365 0.88599 0.85149 0.92529 0.91831 0.89880 0.90061 0.91870 0.88626 0.82813 0.91271 0.91825 0.90893 0.90183 0.94646 0.94707 0.92285 0.92116 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.44 14.32 67.78 0.97 -3.47 16 2 C -0.16 -3.32 9.52 25.65 0.24 -3.07 16 3 C -0.08 -1.44 5.66 29.85 0.17 -1.27 16 4 C -0.12 -2.81 5.52 30.59 0.17 -2.64 16 5 C 0.11 2.41 5.97 86.38 0.52 2.93 16 6 N -0.46 -13.85 2.81 -514.85 -1.45 -15.29 16 7 C 0.19 5.42 6.58 137.64 0.91 6.32 16 8 C -0.02 -0.38 2.70 -11.49 -0.03 -0.42 16 9 H 0.11 1.38 6.84 -2.39 -0.02 1.37 16 10 C -0.11 -1.72 5.27 30.68 0.16 -1.56 16 11 C -0.14 -1.44 6.08 30.65 0.19 -1.26 16 12 C 0.05 0.60 6.55 86.32 0.57 1.17 16 13 N -0.68 -9.46 6.87 -514.02 -3.53 -12.99 16 14 C 0.08 1.48 5.82 86.32 0.50 1.98 16 15 N -0.32 -11.81 12.18 -49.53 -0.60 -12.42 16 16 N -0.35 -14.31 9.84 -58.00 -0.57 -14.88 16 17 C 0.35 13.51 6.27 260.11 1.63 15.14 16 18 N -0.46 -19.06 4.74 -710.99 -3.37 -22.42 16 19 C 0.05 1.86 8.53 127.69 1.09 2.95 16 20 C 0.21 10.15 1.87 44.17 0.08 10.23 16 21 H 0.02 0.91 7.11 -2.38 -0.02 0.89 16 22 C -0.18 -8.42 7.88 71.98 0.57 -7.86 16 23 C -0.50 -27.53 8.41 25.60 0.22 -27.32 16 24 H 0.06 3.46 7.42 -2.91 -0.02 3.44 16 25 C 0.03 1.88 5.45 84.65 0.46 2.34 16 26 N -0.93 -56.44 13.96 21.45 0.30 -56.14 16 27 Si 0.93 45.97 24.37 68.60 1.67 47.64 16 28 H -0.27 -12.89 6.87 99.48 0.68 -12.21 16 29 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 30 H -0.27 -13.03 6.53 99.48 0.65 -12.38 16 31 H 0.10 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.09 2.11 7.84 -2.91 -0.02 2.08 16 33 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.07 1.33 7.79 -2.39 -0.02 1.31 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.13 1.68 7.04 -2.39 -0.02 1.66 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.35 3.38 8.86 -89.70 -0.79 2.59 16 47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.08 3.31 6.65 -2.39 -0.02 3.30 16 51 H 0.03 1.38 6.59 -2.39 -0.02 1.37 16 52 H 0.03 1.67 3.27 -2.39 -0.01 1.66 16 53 H 0.06 2.73 6.00 -2.39 -0.01 2.72 16 54 H 0.06 2.76 6.54 -2.39 -0.02 2.75 16 55 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -70.75 419.87 0.85 -69.90 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.01 Total: 22.41 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 8.40 Total: -5.80 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -9.22 Total: -134.15 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -70.75 0.85 -69.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574915395.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.110 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds