Wall clock time and date at job start Wed Apr 1 2020 04:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47339 * 2 1 4 4 C 1.52998 * 109.46968 * 240.00216 * 2 1 3 5 5 N 1.46901 * 109.47400 * 65.00299 * 4 2 1 6 6 C 1.53007 * 109.47301 * 120.00152 * 2 1 3 7 7 N 1.46503 * 109.46955 * 294.66985 * 6 2 1 8 8 C 1.36739 * 127.13541 * 95.67603 * 7 6 2 9 9 C 1.50694 * 126.34789 * 0.03619 * 8 7 6 10 10 C 1.53782 * 113.61649 * 219.38632 * 9 8 7 11 11 C 1.53959 * 87.02110 * 220.05145 * 10 9 8 12 12 C 1.53780 * 87.11043 * 25.35968 * 11 10 9 13 13 N 1.30294 * 107.30037 * 180.22767 * 8 7 6 14 14 N 1.28527 * 110.05672 * 359.77074 * 13 8 7 15 15 C 1.31214 * 109.85900 * 0.02562 * 14 13 8 16 16 N 1.38589 * 126.47056 * 179.97438 * 15 14 13 17 17 C 1.46897 * 110.99916 * 107.98195 * 16 15 14 18 18 C 1.50706 * 109.46803 * 163.41942 * 17 16 15 19 19 H 1.07994 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99660 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47123 * 60.00070 * 22 20 18 24 24 H 1.48497 * 109.47269 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47082 * 300.00422 * 22 20 18 26 26 C 1.46894 * 110.99733 * 344.02406 * 16 15 14 27 27 C 1.53000 * 109.47432 * 293.95505 * 26 16 15 28 28 C 1.52996 * 117.51564 * 116.28873 * 27 26 16 29 29 C 1.52991 * 60.00098 * 107.48157 * 28 27 26 30 30 H 1.08999 * 109.47062 * 65.01800 * 1 2 3 31 31 H 1.08994 * 109.47567 * 185.02404 * 1 2 3 32 32 H 1.09010 * 109.47028 * 305.02313 * 1 2 3 33 33 H 1.09001 * 109.47139 * 185.00247 * 4 2 1 34 34 H 1.09006 * 109.47224 * 304.99863 * 4 2 1 35 35 H 1.00896 * 110.99874 * 56.04423 * 5 4 2 36 36 H 1.00900 * 111.00235 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.46789 * 174.66905 * 6 2 1 38 38 H 1.09001 * 109.46845 * 54.66733 * 6 2 1 39 39 H 1.09001 * 112.84985 * 350.58133 * 9 8 7 40 40 H 1.09006 * 113.60826 * 334.56897 * 10 9 8 41 41 H 1.08999 * 113.61399 * 105.46443 * 10 9 8 42 42 H 1.09002 * 113.53143 * 270.81180 * 11 10 9 43 43 H 1.08996 * 113.74133 * 139.94416 * 11 10 9 44 44 H 1.08996 * 113.61370 * 220.09292 * 12 11 10 45 45 H 1.09007 * 113.68944 * 89.20073 * 12 11 10 46 46 H 1.08996 * 109.47171 * 283.41488 * 17 16 15 47 47 H 1.09002 * 109.47459 * 43.42392 * 17 16 15 48 48 H 0.97000 * 120.00042 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.46467 * 173.95828 * 26 16 15 50 50 H 1.09002 * 109.47364 * 53.96022 * 26 16 15 51 51 H 1.08999 * 115.54747 * 330.58695 * 27 26 16 52 52 H 1.09004 * 117.49460 * 214.97277 * 28 27 26 53 53 H 1.08999 * 117.50152 * 359.97438 * 28 27 26 54 54 H 1.08995 * 117.49865 * 252.50776 * 29 28 27 55 55 H 1.09002 * 117.50227 * 107.49181 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0375 -2.4457 6 6 2.0400 -0.7213 1.2493 7 7 1.6592 0.0394 2.4420 8 6 0.5634 -0.1621 3.2346 9 6 -0.4930 -1.2201 3.0460 10 6 -1.9189 -0.7269 3.3429 11 6 -2.1650 -2.0909 4.0131 12 6 -0.6477 -2.1585 4.2545 13 7 0.5996 0.7330 4.1808 14 7 1.6384 1.4774 4.0437 15 6 2.3259 1.0944 2.9938 16 7 3.5040 1.6580 2.5301 17 6 4.6476 0.7722 2.7856 18 6 5.8148 1.2004 1.9338 19 1 5.7166 2.0458 1.2689 20 6 7.0079 0.5130 2.0034 21 7 7.1276 -0.5161 2.8135 22 14 8.4544 1.0433 0.9471 23 1 8.8259 2.4415 1.2824 24 1 9.6110 0.1487 1.2063 25 1 8.0765 0.9619 -0.4867 26 6 3.7222 2.9840 3.1233 27 6 2.6398 3.9471 2.6317 28 6 1.6825 4.5267 3.6751 29 6 2.7584 5.4148 3.0472 30 1 -0.3633 0.4340 -0.9315 31 1 -0.3634 -1.0236 0.0900 32 1 -0.3634 0.5898 0.8417 33 1 3.1262 -0.7995 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 1.9881 0.9873 -2.3966 36 1 1.9764 -0.4189 -3.2847 37 1 3.1258 -0.8047 1.2027 38 1 1.6008 -1.7177 1.2982 39 1 -0.4016 -1.7446 2.0948 40 1 -1.9547 0.1132 4.0366 41 1 -2.5198 -0.5641 2.4482 42 1 -2.5321 -2.8534 3.3262 43 1 -2.7508 -2.0300 4.9303 44 1 -0.2239 -3.1498 4.0946 45 1 -0.3340 -1.7110 5.1977 46 1 4.9249 0.8313 3.8380 47 1 4.3748 -0.2538 2.5386 48 1 7.9669 -1.0000 2.8622 49 1 4.7026 3.3575 2.8271 50 1 3.6752 2.9084 4.2096 51 1 2.2367 3.7354 1.6414 52 1 0.6495 4.6962 3.3712 53 1 1.8235 4.2215 4.7120 54 1 3.6074 5.6942 3.6710 55 1 2.4334 6.1688 2.3303 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575997402.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:06 Heat of formation + Delta-G solvation = 106.988222 kcal Electronic energy + Delta-G solvation = -33097.445325 eV Core-core repulsion = 29171.363748 eV Total energy + Delta-G solvation = -3926.081577 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.92554 -39.70836 -39.05453 -38.39508 -37.08114 -35.23464 -34.72543 -32.16815 -31.14989 -29.55611 -28.15063 -27.32572 -26.56016 -26.44552 -25.74820 -24.19788 -23.18285 -22.51874 -22.00072 -21.44345 -20.88052 -19.92322 -18.77410 -18.19459 -17.43619 -17.16322 -16.88849 -16.58930 -16.45078 -16.03244 -15.95635 -15.75478 -15.57408 -15.10928 -14.95546 -14.50289 -14.41047 -13.81581 -13.74195 -13.71253 -13.46103 -13.36676 -13.24418 -13.12599 -12.90339 -12.75499 -12.57941 -12.45563 -12.33439 -12.24695 -12.15783 -12.03873 -11.83406 -11.77963 -11.67847 -11.43742 -11.35546 -11.23379 -11.15798 -10.88012 -10.84516 -10.64999 -10.31434 -9.61968 -9.07453 -8.28625 -6.40517 0.89424 1.38919 1.41962 1.42889 1.51119 1.92744 2.35354 2.83890 3.02656 3.07340 3.35093 3.52448 3.56712 3.70082 3.78058 3.82692 3.95032 3.99792 4.02486 4.05562 4.07429 4.10170 4.18265 4.27676 4.38927 4.44302 4.51199 4.63104 4.66213 4.72206 4.77988 4.78485 4.80556 4.83965 4.92804 4.94271 4.96804 5.02928 5.03772 5.07618 5.08975 5.12872 5.16148 5.25856 5.28928 5.29924 5.33855 5.38723 5.55443 5.63706 5.79537 5.94324 5.96196 6.16346 6.54572 6.57175 6.71768 7.29607 7.90670 8.82489 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008225 B = 0.004194 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.509501 B = 6674.167564 C = 7540.273810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 H 0.052 0.948 4 C 0.076 3.924 5 N -0.846 5.846 6 C 0.112 3.888 7 N -0.468 5.468 8 C 0.189 3.811 9 C -0.032 4.032 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.129 4.129 13 N -0.321 5.321 14 N -0.349 5.349 15 C 0.359 3.641 16 N -0.449 5.449 17 C 0.223 3.777 18 C -0.522 4.522 19 H 0.070 0.930 20 C 0.013 3.987 21 N -0.930 5.930 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.264 1.264 26 C 0.115 3.885 27 C -0.151 4.151 28 C -0.157 4.157 29 C -0.157 4.157 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.020 0.980 34 H 0.090 0.910 35 H 0.341 0.659 36 H 0.352 0.648 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.064 0.936 46 H -0.036 1.036 47 H 0.012 0.988 48 H 0.267 0.733 49 H 0.083 0.917 50 H 0.028 0.972 51 H 0.091 0.909 52 H 0.088 0.912 53 H 0.081 0.919 54 H 0.098 0.902 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.919 -2.012 -7.219 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.108 4.108 3 H 0.071 0.929 4 C -0.056 4.056 5 N -0.376 5.376 6 C -0.010 4.010 7 N -0.161 5.161 8 C -0.079 4.079 9 C -0.052 4.052 10 C -0.156 4.156 11 C -0.158 4.158 12 C -0.168 4.168 13 N -0.159 5.159 14 N -0.193 5.193 15 C 0.001 3.999 16 N -0.172 5.172 17 C 0.098 3.902 18 C -0.560 4.560 19 H 0.088 0.912 20 C -0.187 4.187 21 N -0.570 5.570 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.012 4.012 27 C -0.169 4.169 28 C -0.194 4.194 29 C -0.195 4.195 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.083 0.917 46 H -0.019 1.019 47 H 0.030 0.970 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.046 0.954 51 H 0.109 0.891 52 H 0.106 0.894 53 H 0.099 0.901 54 H 0.116 0.884 55 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.929 -1.443 -6.220 18.093 hybrid contribution 2.990 -0.478 -0.488 3.067 sum -13.939 -1.921 -6.709 15.588 Atomic orbital electron populations 1.21664 0.92838 1.02228 1.01448 1.21279 0.97851 0.99144 0.92491 0.92916 1.21609 0.97028 0.97849 0.89113 1.58711 1.68018 1.06655 1.04227 1.22068 1.01536 0.95441 0.81993 1.46235 1.19554 1.26401 1.23938 1.25152 0.91100 1.00895 0.90786 1.21389 0.90307 0.92016 1.01523 1.22912 0.92743 0.98410 1.01573 1.22795 0.94590 0.96781 1.01678 1.22960 0.98395 0.98929 0.96527 1.73712 1.15351 1.05257 1.21624 1.74518 1.05139 1.25042 1.14602 1.22891 0.95964 0.89913 0.91098 1.58952 0.98760 1.04345 1.55168 1.19457 0.86389 0.90606 0.93713 1.21210 0.95676 1.15381 1.23750 0.91210 1.25835 1.01494 0.94648 0.96678 1.70082 1.27353 1.20867 1.38691 0.85427 0.77699 0.78340 0.79152 1.19286 1.21018 1.18900 1.21443 0.98710 0.85454 0.95619 1.21977 1.00707 0.95154 0.99103 1.22762 0.95308 1.03572 0.97784 1.23044 1.01061 0.91917 1.03460 0.90996 0.90941 0.95162 0.96219 0.89145 0.84686 0.83440 0.90711 0.86538 0.85676 0.90992 0.89544 0.87527 0.90384 0.89961 0.91694 1.01862 0.97013 0.92448 0.89854 0.95374 0.89115 0.89364 0.90060 0.88391 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.15 71.98 0.59 -2.16 16 2 C -0.09 -2.26 2.73 -10.79 -0.03 -2.29 16 3 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 4 C 0.08 1.64 6.17 86.30 0.53 2.17 16 5 N -0.85 -16.06 9.00 -186.71 -1.68 -17.74 16 6 C 0.11 3.36 5.26 86.38 0.45 3.82 16 7 N -0.47 -16.76 2.53 -514.84 -1.30 -18.07 16 8 C 0.19 6.30 6.06 137.64 0.83 7.13 16 9 C -0.03 -0.72 3.52 -11.01 -0.04 -0.76 16 10 C -0.12 -2.31 7.64 31.18 0.24 -2.07 16 11 C -0.12 -1.84 8.09 31.18 0.25 -1.58 16 12 C -0.13 -2.71 7.63 31.12 0.24 -2.47 16 13 N -0.32 -12.88 11.83 -49.54 -0.59 -13.46 16 14 N -0.35 -15.38 10.14 -58.00 -0.59 -15.97 16 15 C 0.36 15.37 6.29 260.11 1.64 17.00 16 16 N -0.45 -20.13 4.48 -710.36 -3.18 -23.31 16 17 C 0.22 11.74 4.51 85.56 0.39 12.12 16 18 C -0.52 -27.98 8.47 25.60 0.22 -27.77 16 19 H 0.07 3.64 7.62 -2.91 -0.02 3.62 16 20 C 0.01 0.69 5.46 84.65 0.46 1.15 16 21 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 22 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 C 0.11 4.83 4.78 86.30 0.41 5.25 16 27 C -0.15 -5.31 5.04 -10.80 -0.05 -5.36 16 28 C -0.16 -5.07 9.41 30.59 0.29 -4.78 16 29 C -0.16 -4.40 10.25 30.59 0.31 -4.09 16 30 H 0.07 1.57 7.62 -2.39 -0.02 1.55 16 31 H 0.07 1.26 7.25 -2.39 -0.02 1.24 16 32 H 0.03 0.78 6.99 -2.38 -0.02 0.76 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.34 6.77 8.99 -89.70 -0.81 5.96 16 36 H 0.35 5.34 9.08 -89.69 -0.81 4.52 16 37 H 0.07 2.74 6.28 -2.39 -0.01 2.73 16 38 H 0.12 2.69 7.23 -2.39 -0.02 2.67 16 39 H 0.13 2.24 6.02 -2.39 -0.01 2.23 16 40 H 0.07 1.77 7.81 -2.38 -0.02 1.75 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.71 8.09 -2.38 -0.02 1.69 16 46 H -0.04 -2.19 8.04 -2.39 -0.02 -2.21 16 47 H 0.01 0.66 6.14 -2.39 -0.01 0.64 16 48 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.08 3.61 7.16 -2.38 -0.02 3.59 16 50 H 0.03 1.27 7.45 -2.39 -0.02 1.25 16 51 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 52 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 53 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 54 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 55 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -67.25 429.28 0.97 -66.28 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.73 Total: 36.44 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.73 Total: -4.68 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -7.06 Total: -142.04 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -67.25 0.97 -66.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575997402.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.266 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds