Wall clock time and date at job start Wed Apr 1 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36030 * 116.99835 * 2 1 4 4 C 1.39314 * 120.00575 * 270.24933 * 3 2 1 5 5 N 1.39197 * 120.17922 * 0.02562 * 4 3 2 6 6 C 1.40263 * 119.64468 * 180.27732 * 4 3 2 7 7 C 1.47287 * 120.17696 * 179.75223 * 6 4 3 8 8 O 1.21646 * 119.99999 * 353.76943 * 7 6 4 9 9 N 1.34777 * 120.00436 * 173.76680 * 7 6 4 10 10 C 1.36916 * 120.00368 * 179.72931 * 9 7 6 11 11 H 1.07994 * 119.99913 * 0.26647 * 10 9 7 12 12 C 1.39009 * 120.00016 * 180.27694 * 10 9 7 13 13 N 1.31397 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00065 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47192 * 59.99671 * 14 12 10 16 16 H 1.48501 * 109.47320 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47124 * 299.99720 * 14 12 10 18 18 C 1.39933 * 119.65065 * 359.47459 * 6 4 3 19 19 C 1.37756 * 119.99956 * 0.27644 * 18 6 4 20 20 Cl 1.73601 * 119.82001 * 180.02562 * 19 18 6 21 21 C 1.38420 * 120.00529 * 90.00112 * 3 2 1 22 22 Br 1.89109 * 119.82226 * 359.97438 * 21 3 2 23 23 H 1.08989 * 109.47253 * 300.00249 * 1 2 3 24 24 H 1.09007 * 109.46539 * 60.00371 * 1 2 3 25 25 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 26 26 H 0.96998 * 119.99828 * 335.41815 * 5 4 3 27 27 H 0.97000 * 120.00016 * 155.42371 * 5 4 3 28 28 H 0.97003 * 119.99461 * 359.97438 * 9 7 6 29 29 H 0.96996 * 119.99883 * 179.97438 * 13 12 10 30 30 H 1.08001 * 120.00374 * 180.25724 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 2.3582 1.8352 -1.2064 5 7 2.0388 1.2212 -2.4141 6 6 3.0002 3.0822 -1.1976 7 6 3.3400 3.7490 -2.4662 8 8 3.1679 3.1707 -3.5224 9 7 3.8415 5.0000 -2.4569 10 6 4.1625 5.6177 -3.6358 11 1 4.0099 5.1042 -4.5735 12 6 4.6851 6.9058 -3.6258 13 7 4.8706 7.5307 -2.4849 14 14 5.1238 7.7483 -5.2342 15 1 3.9095 7.8604 -6.0815 16 1 5.6575 9.1052 -4.9528 17 1 6.1527 6.9492 -5.9470 18 6 3.3110 3.6923 0.0228 19 6 2.9915 3.0655 1.2072 20 17 3.3786 3.8268 2.7186 21 6 2.3608 1.8288 1.1987 22 35 1.9287 0.9822 2.8336 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.9393 0.2573 -2.4567 27 1 1.9159 1.7572 -3.2131 28 1 3.9783 5.4613 -1.6146 29 1 5.2356 8.4293 -2.4779 30 1 3.8015 4.6543 0.0362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584461045.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:48 Heat of formation + Delta-G solvation = -47.235559 kcal Electronic energy + Delta-G solvation = -20058.279750 eV Core-core repulsion = 16540.182272 eV Total energy + Delta-G solvation = -3518.097479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.966 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23498 -38.42018 -37.08916 -36.00645 -34.67086 -33.68868 -32.08031 -31.17371 -29.35896 -28.39812 -26.67696 -25.28349 -23.03273 -21.97620 -19.93901 -18.41310 -17.80763 -16.97806 -16.48060 -15.80401 -15.73322 -15.06284 -15.01724 -14.52159 -14.18121 -13.84982 -13.64367 -13.10307 -13.09271 -12.28879 -12.21686 -11.78115 -11.66501 -11.54961 -11.22707 -11.00826 -10.95567 -10.58979 -10.42992 -10.13502 -9.98106 -9.78933 -9.72485 -8.64826 -8.56208 -8.24303 -7.33505 -6.69871 -4.01883 0.80475 1.35660 1.56402 2.32424 2.98552 3.14025 3.17130 3.20153 3.75187 3.98303 4.21057 4.24606 4.67869 5.06027 5.13551 5.25531 5.27928 5.33048 5.48189 5.57141 5.63660 5.86384 6.19483 6.31554 6.47704 7.28492 7.31011 7.76942 7.78221 8.20261 8.37078 8.90634 9.24308 9.78928 10.45944 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.003750 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.624721 B = 7465.476233 C = 8838.683071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.039 3.961 4 C 0.256 3.744 5 N -0.844 5.844 6 C -0.138 4.138 7 C 0.470 3.530 8 O -0.599 6.599 9 N -0.533 5.533 10 C -0.295 4.295 11 H 0.110 0.890 12 C 0.026 3.974 13 N -0.882 5.882 14 Si 0.938 3.062 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.270 1.270 18 C -0.051 4.051 19 C -0.061 4.061 20 Cl -0.058 7.058 21 C -0.060 4.060 22 Br -0.032 7.032 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.394 0.606 27 H 0.420 0.580 28 H 0.395 0.605 29 H 0.279 0.721 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 -10.583 10.251 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C -0.013 4.013 4 C 0.143 3.857 5 N -0.390 5.390 6 C -0.147 4.147 7 C 0.260 3.740 8 O -0.488 6.488 9 N -0.165 5.165 10 C -0.425 4.425 11 H 0.128 0.872 12 C -0.179 4.179 13 N -0.520 5.520 14 Si 0.763 3.237 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.195 1.195 18 C -0.073 4.073 19 C -0.092 4.092 20 Cl -0.029 7.029 21 C -0.142 4.142 22 Br 0.054 6.946 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.223 0.777 27 H 0.260 0.740 28 H 0.230 0.770 29 H 0.089 0.911 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.218 -11.086 10.278 16.752 hybrid contribution 0.267 1.031 -0.604 1.224 sum -6.951 -10.055 9.674 15.588 Atomic orbital electron populations 1.23041 0.79597 1.02994 1.00944 1.86124 1.19668 1.23460 1.93983 1.17454 1.04497 0.90015 0.89307 1.17813 0.90802 0.90732 0.86396 1.42860 1.76975 1.10014 1.09100 1.19907 1.03549 0.96768 0.94478 1.17213 0.86447 0.83250 0.87131 1.90393 1.61424 1.65279 1.31705 1.41892 1.52391 1.12131 1.10079 1.19826 1.38241 0.97285 0.87119 0.87209 1.25438 0.96596 0.96659 0.99179 1.69589 1.42336 1.14321 1.25748 0.85801 0.79219 0.78034 0.80600 1.19560 1.20649 1.19531 1.21105 0.97356 0.99682 0.89115 1.20047 1.07078 0.94040 0.87991 1.98353 1.93015 1.80960 1.30602 1.21826 1.05438 0.95139 0.91800 1.96643 1.92612 1.79649 1.25696 0.93357 0.93477 0.88871 0.77742 0.74013 0.76975 0.91070 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.13 101.05 1.13 1.44 16 2 O -0.32 -4.37 9.13 -19.84 -0.18 -4.55 16 3 C 0.04 0.61 5.72 -39.11 -0.22 0.38 16 4 C 0.26 4.42 6.78 -83.36 -0.56 3.85 16 5 N -0.84 -13.38 8.40 32.66 0.27 -13.11 16 6 C -0.14 -2.64 5.89 -104.82 -0.62 -3.25 16 7 C 0.47 10.76 7.68 -12.58 -0.10 10.67 16 8 O -0.60 -14.80 13.39 5.24 0.07 -14.73 16 9 N -0.53 -12.85 5.23 -11.99 -0.06 -12.91 16 10 C -0.30 -7.67 9.68 -15.00 -0.15 -7.82 16 11 H 0.11 2.95 7.15 -52.49 -0.38 2.57 16 12 C 0.03 0.65 5.50 -17.45 -0.10 0.55 16 13 N -0.88 -22.38 13.05 55.50 0.72 -21.65 16 14 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 C -0.05 -0.88 9.29 -39.12 -0.36 -1.24 16 19 C -0.06 -0.97 6.31 -39.54 -0.25 -1.22 16 20 Cl -0.06 -0.84 27.70 -51.86 -1.44 -2.28 16 21 C -0.06 -0.93 6.24 -39.30 -0.25 -1.17 16 22 Br -0.03 -0.42 31.89 -68.01 -2.17 -2.59 16 23 H 0.05 0.51 8.10 -51.94 -0.42 0.09 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.39 5.24 8.46 -40.82 -0.35 4.90 16 27 H 0.42 7.39 6.14 -40.82 -0.25 7.14 16 28 H 0.40 9.13 5.95 -40.82 -0.24 8.88 16 29 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.15 2.48 6.44 -52.49 -0.34 2.14 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -27.15 300.71 -6.70 -33.86 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -1.95 Total: 16.69 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.48 Total: 2.18 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.94 Total: -47.67 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.11 Total: -19.28 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.44 Total: -2.28 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.17 Total: -2.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.15 -6.70 -33.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584461045.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.380 kcal (2) G-P(sol) polarization free energy of solvation -27.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds