Wall clock time and date at job start Wed Apr 1 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36030 * 116.99835 * 2 1 4 4 C 1.39314 * 120.00575 * 270.24933 * 3 2 1 5 5 N 1.39197 * 120.17922 * 0.02562 * 4 3 2 6 6 C 1.40263 * 119.64468 * 180.27732 * 4 3 2 7 7 C 1.47287 * 120.17696 * 179.75223 * 6 4 3 8 8 O 1.21646 * 119.99999 * 353.76943 * 7 6 4 9 9 N 1.34777 * 120.00436 * 173.76680 * 7 6 4 10 10 C 1.36916 * 120.00368 * 179.72931 * 9 7 6 11 11 H 1.07994 * 119.99913 * 0.26647 * 10 9 7 12 12 C 1.39009 * 120.00016 * 180.27694 * 10 9 7 13 13 N 1.31397 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00065 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47192 * 59.99671 * 14 12 10 16 16 H 1.48501 * 109.47320 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47124 * 299.99720 * 14 12 10 18 18 C 1.39933 * 119.65065 * 359.47459 * 6 4 3 19 19 C 1.37756 * 119.99956 * 0.27644 * 18 6 4 20 20 Cl 1.73601 * 119.82001 * 180.02562 * 19 18 6 21 21 C 1.38420 * 120.00529 * 90.00112 * 3 2 1 22 22 Br 1.89109 * 119.82226 * 359.97438 * 21 3 2 23 23 H 1.08989 * 109.47253 * 300.00249 * 1 2 3 24 24 H 1.09007 * 109.46539 * 60.00371 * 1 2 3 25 25 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 26 26 H 0.96998 * 119.99828 * 335.41815 * 5 4 3 27 27 H 0.97000 * 120.00016 * 155.42371 * 5 4 3 28 28 H 0.97003 * 119.99461 * 359.97438 * 9 7 6 29 29 H 0.96996 * 119.99883 * 179.97438 * 13 12 10 30 30 H 1.08001 * 120.00374 * 180.25724 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 2.3582 1.8352 -1.2064 5 7 2.0388 1.2212 -2.4141 6 6 3.0002 3.0822 -1.1976 7 6 3.3400 3.7490 -2.4662 8 8 3.1679 3.1707 -3.5224 9 7 3.8415 5.0000 -2.4569 10 6 4.1625 5.6177 -3.6358 11 1 4.0099 5.1042 -4.5735 12 6 4.6851 6.9058 -3.6258 13 7 4.8706 7.5307 -2.4849 14 14 5.1238 7.7483 -5.2342 15 1 3.9095 7.8604 -6.0815 16 1 5.6575 9.1052 -4.9528 17 1 6.1527 6.9492 -5.9470 18 6 3.3110 3.6923 0.0228 19 6 2.9915 3.0655 1.2072 20 17 3.3786 3.8268 2.7186 21 6 2.3608 1.8288 1.1987 22 35 1.9287 0.9822 2.8336 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.9393 0.2573 -2.4567 27 1 1.9159 1.7572 -3.2131 28 1 3.9783 5.4613 -1.6146 29 1 5.2356 8.4293 -2.4779 30 1 3.8015 4.6543 0.0362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584461045.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:48 Heat of formation + Delta-G solvation = -64.896160 kcal Electronic energy + Delta-G solvation = -20059.045571 eV Core-core repulsion = 16540.182272 eV Total energy + Delta-G solvation = -3518.863300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.966 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60894 -39.98518 -38.39160 -37.31472 -36.32044 -35.21399 -33.66375 -32.72345 -30.63315 -29.73357 -27.69212 -27.06678 -24.51105 -23.30182 -21.54896 -20.19409 -19.22224 -18.30661 -17.82520 -17.38317 -16.95061 -16.63407 -16.25123 -16.01166 -15.74097 -15.47964 -14.89487 -14.71759 -14.45656 -13.67284 -13.55070 -13.45034 -12.99912 -12.80821 -12.68463 -12.44402 -12.21830 -12.14403 -12.12485 -11.57196 -11.23550 -11.13116 -11.05898 -10.42471 -10.13582 -9.86188 -8.65976 -8.54757 -5.98666 -0.54728 0.03364 0.32306 1.04877 1.38908 1.43856 1.54520 1.72028 2.25408 2.43365 2.68935 2.89446 3.06858 3.26288 3.70870 3.97833 4.08188 4.12592 4.38895 4.48971 4.58606 4.76670 4.79372 4.86561 5.07943 5.36179 5.89998 6.12880 6.41972 6.55416 6.90264 7.04192 7.41432 7.96114 8.61596 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.003750 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.624721 B = 7465.476233 C = 8838.683071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.320 6.320 3 C 0.051 3.949 4 C 0.254 3.746 5 N -0.837 5.837 6 C -0.166 4.166 7 C 0.477 3.523 8 O -0.621 6.621 9 N -0.547 5.547 10 C -0.332 4.332 11 H 0.091 0.909 12 C -0.008 4.008 13 N -0.908 5.908 14 Si 0.998 3.002 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.270 1.270 18 C -0.043 4.043 19 C -0.065 4.065 20 Cl -0.042 7.042 21 C -0.057 4.057 22 Br -0.003 7.003 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.124 0.876 26 H 0.407 0.593 27 H 0.413 0.587 28 H 0.397 0.603 29 H 0.283 0.717 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -11.796 11.458 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.236 6.236 3 C -0.001 4.001 4 C 0.140 3.860 5 N -0.382 5.382 6 C -0.175 4.175 7 C 0.267 3.733 8 O -0.510 6.510 9 N -0.181 5.181 10 C -0.462 4.462 11 H 0.109 0.891 12 C -0.210 4.210 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.195 1.195 18 C -0.064 4.064 19 C -0.096 4.096 20 Cl -0.013 7.013 21 C -0.140 4.140 22 Br 0.083 6.917 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.142 0.858 26 H 0.238 0.762 27 H 0.251 0.749 28 H 0.232 0.768 29 H 0.092 0.908 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.007 -12.341 11.518 18.684 hybrid contribution 0.354 1.131 -0.775 1.416 sum -7.653 -11.210 10.743 17.310 Atomic orbital electron populations 1.23307 0.77441 1.05173 1.01174 1.86115 1.21507 1.22102 1.93895 1.17411 1.03847 0.90142 0.88656 1.17920 0.90409 0.90284 0.87412 1.42786 1.76325 1.10659 1.08431 1.19592 1.06491 0.98097 0.93306 1.17806 0.84557 0.82729 0.88233 1.90367 1.61705 1.65762 1.33188 1.41865 1.53873 1.12699 1.09668 1.19785 1.40845 0.98365 0.87182 0.89116 1.26165 0.95967 0.96633 1.02208 1.69651 1.43260 1.14692 1.27132 0.84911 0.78820 0.77252 0.76951 1.19352 1.19552 1.19496 1.21050 0.96722 0.99509 0.89159 1.20031 1.07068 0.94341 0.88206 1.98359 1.92902 1.80764 1.29293 1.22074 1.03935 0.94849 0.93093 1.96679 1.92295 1.79009 1.23709 0.93039 0.93365 0.85804 0.76211 0.74884 0.76769 0.90777 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.13 113.37 1.26 1.68 16 2 O -0.32 -7.93 9.13 -93.89 -0.86 -8.79 16 3 C 0.05 1.49 5.72 22.57 0.13 1.62 16 4 C 0.25 8.54 6.78 38.72 0.26 8.80 16 5 N -0.84 -25.91 8.40 -50.58 -0.42 -26.34 16 6 C -0.17 -6.36 5.89 -19.99 -0.12 -6.48 16 7 C 0.48 22.44 7.68 86.62 0.67 23.10 16 8 O -0.62 -31.49 13.39 -4.18 -0.06 -31.55 16 9 N -0.55 -27.41 5.23 -310.10 -1.62 -29.03 16 10 C -0.33 -17.95 9.68 84.08 0.81 -17.13 16 11 H 0.09 5.11 7.15 -2.91 -0.02 5.09 16 12 C -0.01 -0.40 5.50 84.94 0.47 0.06 16 13 N -0.91 -46.97 13.05 21.67 0.28 -46.68 16 14 Si 1.00 40.66 29.55 68.60 2.03 42.68 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 16 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 C -0.04 -1.48 9.29 22.57 0.21 -1.27 16 19 C -0.07 -2.00 6.31 22.30 0.14 -1.86 16 20 Cl -0.04 -1.15 27.70 -2.72 -0.08 -1.23 16 21 C -0.06 -1.65 6.24 22.45 0.14 -1.51 16 22 Br 0.00 -0.07 31.89 -20.37 -0.65 -0.72 16 23 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 24 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.41 10.24 8.46 -92.71 -0.78 9.45 16 27 H 0.41 14.54 6.14 -92.71 -0.57 13.97 16 28 H 0.40 19.07 5.95 -92.71 -0.55 18.52 16 29 H 0.28 13.67 8.31 -92.71 -0.77 12.89 16 30 H 0.14 4.97 6.44 -2.91 -0.02 4.95 16 Total: -1.00 -58.41 300.71 1.95 -56.47 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.65 Total: 38.16 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 3.97 Total: 7.01 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -1.76 Total: -102.04 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.91 Total: -40.34 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.65 Total: -0.72 kcal Total: -58.41 1.95 -56.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584461045.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.430 kcal (2) G-P(sol) polarization free energy of solvation -58.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds