Wall clock time and date at job start Wed Apr 1 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33858 * 122.44502 * 2 1 4 4 S 1.70617 * 110.96227 * 180.02562 * 3 2 1 5 5 C 1.75837 * 91.56327 * 0.02562 * 4 3 2 6 6 C 1.46388 * 125.46011 * 179.97438 * 5 4 3 7 7 O 1.21636 * 119.99861 * 174.50647 * 6 5 4 8 8 O 1.34895 * 120.00554 * 354.50878 * 6 5 4 9 9 C 1.36750 * 109.07253 * 359.97438 * 5 4 3 10 10 S 1.76207 * 123.35523 * 180.02562 * 9 5 4 11 11 O 1.42097 * 106.40257 * 182.81924 * 10 9 5 12 12 O 1.42101 * 106.39903 * 315.73935 * 10 9 5 13 13 N 1.65600 * 107.21426 * 69.27700 * 10 9 5 14 14 C 1.46501 * 119.99860 * 65.00349 * 13 10 9 15 15 C 1.50709 * 109.46747 * 164.99779 * 14 13 10 16 16 O 1.21289 * 119.99993 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99481 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99339 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00257 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99440 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00134 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99623 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47229 * 60.00290 * 22 20 18 24 24 H 1.48506 * 109.46808 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47395 * 299.99968 * 22 20 18 26 26 H 1.09000 * 109.47129 * 263.14895 * 1 2 3 27 27 H 1.09005 * 109.46682 * 23.14636 * 1 2 3 28 28 H 1.08995 * 109.46794 * 143.14236 * 1 2 3 29 29 H 1.07997 * 124.51993 * 0.04195 * 3 2 1 30 30 H 0.96696 * 116.99952 * 179.97438 * 8 6 5 31 31 H 0.97001 * 119.99676 * 245.00125 * 13 10 9 32 32 H 1.08994 * 109.46793 * 284.99454 * 14 13 10 33 33 H 1.08993 * 109.47194 * 45.00253 * 14 13 10 34 34 H 0.97000 * 120.00396 * 0.02562 * 17 15 14 35 35 H 0.97000 * 119.99917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2252 1.1296 0.0000 4 16 3.8972 0.7900 -0.0007 5 6 3.5943 -0.9421 -0.0018 6 6 4.6226 -1.9841 -0.0033 7 8 4.3035 -3.1535 0.0969 8 8 5.9240 -1.6474 -0.1158 9 6 2.2442 -1.1596 -0.0010 10 16 1.5219 -2.7668 -0.0010 11 8 0.1155 -2.5746 -0.0671 12 8 2.2472 -3.5327 -0.9531 13 7 1.8324 -3.4438 1.4781 14 6 1.2504 -2.8584 2.6883 15 6 1.3679 -3.8386 3.8270 16 8 1.8863 -4.9200 3.6452 17 7 0.8968 -3.5136 5.0472 18 6 1.0032 -4.4056 6.0829 19 1 1.4649 -5.3685 5.9211 20 6 0.5180 -4.0703 7.3411 21 7 -0.0432 -2.8986 7.5381 22 14 0.6624 -5.2859 8.7521 23 1 2.0941 -5.5987 8.9914 24 1 0.0731 -4.6921 9.9791 25 1 -0.0660 -6.5332 8.4074 26 1 -0.3633 -0.1226 1.0203 27 1 -0.3633 0.9450 -0.4040 28 1 -0.3633 -0.8222 -0.6164 29 1 1.8026 2.1235 0.0007 30 1 6.5663 -2.3701 -0.1116 31 1 2.3998 -4.2279 1.5430 32 1 1.7836 -1.9420 2.9413 33 1 0.1992 -2.6304 2.5123 34 1 0.4818 -2.6490 5.1924 35 1 -0.3823 -2.6647 8.4163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600654242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:35 Heat of formation + Delta-G solvation = -154.677068 kcal Electronic energy + Delta-G solvation = -26529.306919 eV Core-core repulsion = 22360.898620 eV Total energy + Delta-G solvation = -4168.408299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47976 -38.66476 -38.38980 -37.12150 -36.22269 -35.68041 -34.58817 -33.65271 -31.61168 -31.32881 -28.27363 -27.08128 -26.02640 -24.29284 -21.92791 -20.72658 -19.61073 -19.00602 -18.84738 -18.10902 -17.91365 -17.40058 -16.79137 -16.03998 -15.79763 -15.57895 -15.36493 -14.82895 -14.56574 -14.39768 -14.14726 -14.12805 -13.64089 -13.57638 -13.26511 -12.57213 -12.51269 -12.42669 -12.20998 -11.94234 -11.81330 -11.76547 -11.67227 -11.50658 -11.25798 -11.09233 -10.98508 -10.75971 -10.48439 -10.27841 -9.62330 -9.59310 -9.29878 -8.92130 -8.56097 -8.06698 -6.49003 -3.90399 -0.35457 0.42663 1.05573 1.42665 1.64281 2.36532 2.52553 3.15979 3.17713 3.23135 3.28290 3.75397 3.84903 4.12348 4.25966 4.69035 4.76232 4.82640 4.93957 5.16582 5.18345 5.26313 5.50075 5.55538 5.67591 5.80064 5.86382 5.95367 6.10881 6.30523 6.33855 7.37752 7.48738 7.52279 7.96598 8.49754 9.08432 9.42550 9.91874 10.68122 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003295 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.435827 B = 8496.230806 C = 8637.856332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 C -0.257 4.257 4 S 0.304 5.696 5 C -0.153 4.153 6 C 0.536 3.464 7 O -0.457 6.457 8 O -0.509 6.509 9 C -0.612 4.612 10 S 2.712 3.288 11 O -0.952 6.952 12 O -0.936 6.936 13 N -1.085 6.085 14 C 0.106 3.894 15 C 0.437 3.563 16 O -0.586 6.586 17 N -0.554 5.554 18 C -0.303 4.303 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.898 5.898 22 Si 0.933 3.067 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.180 0.820 30 H 0.425 0.575 31 H 0.432 0.568 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.395 0.605 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 13.089 -15.252 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 C -0.395 4.395 4 S 0.575 5.425 5 C -0.275 4.275 6 C 0.375 3.625 7 O -0.343 6.343 8 O -0.323 6.323 9 C -0.713 4.713 10 S 2.795 3.205 11 O -0.942 6.942 12 O -0.926 6.926 13 N -0.851 5.851 14 C -0.025 4.025 15 C 0.221 3.779 16 O -0.471 6.471 17 N -0.190 5.190 18 C -0.433 4.433 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.760 3.240 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.197 0.803 30 H 0.285 0.715 31 H 0.272 0.728 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.485 13.226 -15.841 21.952 hybrid contribution -0.407 -0.749 1.272 1.531 sum 7.078 12.477 -14.569 20.446 Atomic orbital electron populations 1.21205 0.87577 1.04788 1.05246 1.18343 0.98433 0.89140 0.98682 1.25540 0.99076 1.03901 1.10963 1.83069 1.02782 0.95568 1.61081 1.23280 0.93970 0.98759 1.11466 1.19295 0.81853 0.86842 0.74500 1.91128 1.81824 1.18604 1.42741 1.84495 1.16697 1.45312 1.85795 1.30871 1.00461 1.25175 1.14816 1.01609 0.73649 0.72414 0.72854 1.93539 1.29042 1.85573 1.86053 1.93627 1.73334 1.67272 1.58400 1.55016 1.65856 1.42832 1.21351 1.20943 0.99342 0.96281 0.85912 1.19606 0.85554 0.88806 0.83969 1.90517 1.49265 1.24356 1.82961 1.41803 1.51783 1.17944 1.07447 1.19691 1.37132 0.99048 0.87413 0.87753 1.25286 0.96429 0.97092 0.98870 1.69597 1.39087 1.20568 1.24595 0.85885 0.78766 0.79936 0.79449 1.19855 1.20909 1.19777 0.89607 0.91151 0.87179 0.80303 0.71502 0.72771 0.90720 0.88634 0.77164 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.01 36.01 0.32 -1.03 16 2 C -0.04 -0.40 5.78 -106.46 -0.62 -1.02 16 3 C -0.26 -2.23 10.65 29.19 0.31 -1.92 16 4 S 0.30 2.60 22.93 -107.50 -2.47 0.13 16 5 C -0.15 -1.90 6.44 -36.84 -0.24 -2.13 16 6 C 0.54 6.92 8.22 34.01 0.28 7.20 16 7 O -0.46 -7.35 13.18 -27.29 -0.36 -7.71 16 8 O -0.51 -4.52 13.29 -41.03 -0.55 -5.07 16 9 C -0.61 -8.18 5.92 -40.42 -0.24 -8.42 16 10 S 2.71 43.42 5.00 -107.50 -0.54 42.89 16 11 O -0.95 -15.66 13.64 -57.17 -0.78 -16.44 16 12 O -0.94 -17.31 15.34 -66.87 -1.03 -18.34 16 13 N -1.08 -18.97 5.34 -11.66 -0.06 -19.04 16 14 C 0.11 1.86 6.70 -5.19 -0.03 1.83 16 15 C 0.44 10.14 7.85 -10.98 -0.09 10.05 16 16 O -0.59 -15.61 15.30 5.55 0.08 -15.53 16 17 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.71 13.05 55.50 0.72 -22.99 16 22 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.11 1.32 5.53 -51.93 -0.29 1.03 16 29 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.42 1.88 9.11 45.56 0.42 2.29 16 31 H 0.43 8.21 7.45 -34.47 -0.26 7.96 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.51 7.75 -51.93 -0.40 1.10 16 34 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -35.61 334.63 -7.60 -43.21 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -2.05 Total: 15.24 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.54 Total: -3.28 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.60 Total: -55.75 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -2.63 Total: -63.08 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -3.00 Total: 43.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.61 -7.60 -43.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600654242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.472 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds