Wall clock time and date at job start Wed Apr 1 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33858 * 122.44502 * 2 1 4 4 S 1.70617 * 110.96227 * 180.02562 * 3 2 1 5 5 C 1.75837 * 91.56327 * 0.02562 * 4 3 2 6 6 C 1.46388 * 125.46011 * 179.97438 * 5 4 3 7 7 O 1.21636 * 119.99861 * 174.50647 * 6 5 4 8 8 O 1.34895 * 120.00554 * 354.50878 * 6 5 4 9 9 C 1.36750 * 109.07253 * 359.97438 * 5 4 3 10 10 S 1.76207 * 123.35523 * 180.02562 * 9 5 4 11 11 O 1.42097 * 106.40257 * 182.81924 * 10 9 5 12 12 O 1.42101 * 106.39903 * 315.73935 * 10 9 5 13 13 N 1.65600 * 107.21426 * 69.27700 * 10 9 5 14 14 C 1.46501 * 119.99860 * 65.00349 * 13 10 9 15 15 C 1.50709 * 109.46747 * 164.99779 * 14 13 10 16 16 O 1.21289 * 119.99993 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99481 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99339 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00257 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99440 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00134 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99623 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47229 * 60.00290 * 22 20 18 24 24 H 1.48506 * 109.46808 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47395 * 299.99968 * 22 20 18 26 26 H 1.09000 * 109.47129 * 263.14895 * 1 2 3 27 27 H 1.09005 * 109.46682 * 23.14636 * 1 2 3 28 28 H 1.08995 * 109.46794 * 143.14236 * 1 2 3 29 29 H 1.07997 * 124.51993 * 0.04195 * 3 2 1 30 30 H 0.96696 * 116.99952 * 179.97438 * 8 6 5 31 31 H 0.97001 * 119.99676 * 245.00125 * 13 10 9 32 32 H 1.08994 * 109.46793 * 284.99454 * 14 13 10 33 33 H 1.08993 * 109.47194 * 45.00253 * 14 13 10 34 34 H 0.97000 * 120.00396 * 0.02562 * 17 15 14 35 35 H 0.97000 * 119.99917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2252 1.1296 0.0000 4 16 3.8972 0.7900 -0.0007 5 6 3.5943 -0.9421 -0.0018 6 6 4.6226 -1.9841 -0.0033 7 8 4.3035 -3.1535 0.0969 8 8 5.9240 -1.6474 -0.1158 9 6 2.2442 -1.1596 -0.0010 10 16 1.5219 -2.7668 -0.0010 11 8 0.1155 -2.5746 -0.0671 12 8 2.2472 -3.5327 -0.9531 13 7 1.8324 -3.4438 1.4781 14 6 1.2504 -2.8584 2.6883 15 6 1.3679 -3.8386 3.8270 16 8 1.8863 -4.9200 3.6452 17 7 0.8968 -3.5136 5.0472 18 6 1.0032 -4.4056 6.0829 19 1 1.4649 -5.3685 5.9211 20 6 0.5180 -4.0703 7.3411 21 7 -0.0432 -2.8986 7.5381 22 14 0.6624 -5.2859 8.7521 23 1 2.0941 -5.5987 8.9914 24 1 0.0731 -4.6921 9.9791 25 1 -0.0660 -6.5332 8.4074 26 1 -0.3633 -0.1226 1.0203 27 1 -0.3633 0.9450 -0.4040 28 1 -0.3633 -0.8222 -0.6164 29 1 1.8026 2.1235 0.0007 30 1 6.5663 -2.3701 -0.1116 31 1 2.3998 -4.2279 1.5430 32 1 1.7836 -1.9420 2.9413 33 1 0.1992 -2.6304 2.5123 34 1 0.4818 -2.6490 5.1924 35 1 -0.3823 -2.6647 8.4163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600654242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:35 Heat of formation + Delta-G solvation = -184.436286 kcal Electronic energy + Delta-G solvation = -26530.597376 eV Core-core repulsion = 22360.898620 eV Total energy + Delta-G solvation = -4169.698755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38034 -40.26706 -39.48567 -38.32300 -37.14623 -36.97087 -36.32033 -35.36674 -33.32668 -32.43971 -29.04184 -28.72654 -26.91840 -26.14853 -22.80172 -21.65972 -21.40796 -20.13585 -20.05566 -19.73315 -18.91066 -18.69719 -17.76675 -17.26781 -17.14787 -16.91110 -16.59625 -16.30853 -16.05055 -15.94371 -15.41073 -15.10191 -14.97465 -14.47084 -14.21604 -14.11973 -13.89373 -13.57321 -13.44676 -13.26633 -13.10777 -13.05584 -12.91404 -12.80270 -12.64869 -12.44685 -12.15214 -12.11860 -11.93576 -11.74797 -11.55015 -10.71371 -10.44313 -10.37958 -10.06141 -9.66606 -8.48781 -5.98069 -1.23436 -0.71103 0.25350 0.68271 0.82763 1.39262 1.43078 1.43781 1.53774 1.74065 1.94779 1.97321 2.30529 2.65277 3.06746 3.18146 3.31309 3.81948 3.93107 4.04041 4.11415 4.34660 4.39693 4.42103 4.55366 4.77209 4.80429 4.90844 5.18751 5.35914 5.40324 5.52603 5.89789 6.01618 6.53577 6.71560 7.07585 7.47738 8.01388 8.67895 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003295 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.435827 B = 8496.230806 C = 8637.856332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C -0.243 4.243 4 S 0.397 5.603 5 C -0.195 4.195 6 C 0.534 3.466 7 O -0.502 6.502 8 O -0.496 6.496 9 C -0.625 4.625 10 S 2.721 3.279 11 O -0.965 6.965 12 O -0.969 6.969 13 N -1.095 6.095 14 C 0.115 3.885 15 C 0.434 3.566 16 O -0.625 6.625 17 N -0.560 5.560 18 C -0.339 4.339 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.913 5.913 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.273 1.273 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.218 0.782 30 H 0.442 0.558 31 H 0.423 0.577 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.401 0.599 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.280 16.295 -15.059 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 C -0.382 4.382 4 S 0.669 5.331 5 C -0.317 4.317 6 C 0.376 3.624 7 O -0.391 6.391 8 O -0.311 6.311 9 C -0.731 4.731 10 S 2.810 3.190 11 O -0.955 6.955 12 O -0.960 6.960 13 N -0.858 5.858 14 C -0.015 4.015 15 C 0.220 3.780 16 O -0.513 6.513 17 N -0.197 5.197 18 C -0.469 4.469 19 H 0.099 0.901 20 C -0.207 4.207 21 N -0.553 5.553 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.193 1.193 25 H -0.199 1.199 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.235 0.765 30 H 0.306 0.694 31 H 0.261 0.739 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.236 0.764 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.946 16.431 -15.653 24.045 hybrid contribution -0.440 -1.547 1.133 1.967 sum 7.506 14.884 -14.521 22.107 Atomic orbital electron populations 1.21233 0.87419 1.05591 1.05025 1.18413 0.98783 0.89166 1.00012 1.26055 0.99449 1.04799 1.07892 1.82792 1.01746 0.91270 1.57311 1.23485 0.93574 1.01452 1.13228 1.19560 0.82898 0.86512 0.73468 1.91112 1.82578 1.20404 1.45026 1.84452 1.15634 1.46064 1.84937 1.30304 1.01264 1.23801 1.17742 1.00920 0.73140 0.73063 0.71901 1.93528 1.29931 1.86130 1.85955 1.93579 1.73937 1.69273 1.59180 1.55098 1.65835 1.43181 1.21681 1.20951 1.01241 0.95521 0.83763 1.20516 0.83731 0.89094 0.84673 1.90489 1.50558 1.26456 1.83777 1.41826 1.52305 1.17925 1.07633 1.19663 1.38982 0.99153 0.89067 0.90133 1.26022 0.95488 0.98738 1.00468 1.69647 1.38825 1.21428 1.25448 0.84991 0.78715 0.77800 0.76844 1.19687 1.19308 1.19861 0.89682 0.88156 0.89330 0.76509 0.69409 0.73909 0.87419 0.86605 0.76426 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.01 71.24 0.64 -1.89 16 2 C -0.05 -1.09 5.78 -21.05 -0.12 -1.21 16 3 C -0.24 -3.12 10.65 66.82 0.71 -2.41 16 4 S 0.40 5.18 22.93 -56.49 -1.30 3.89 16 5 C -0.20 -4.54 6.44 24.04 0.15 -4.39 16 6 C 0.53 13.63 8.22 69.94 0.57 14.20 16 7 O -0.50 -16.79 13.18 26.96 0.36 -16.43 16 8 O -0.50 -8.09 13.29 -58.10 -0.77 -8.86 16 9 C -0.62 -16.08 5.92 21.73 0.13 -15.95 16 10 S 2.72 89.57 5.00 -56.49 -0.28 89.29 16 11 O -0.97 -32.44 13.64 -128.00 -1.75 -34.19 16 12 O -0.97 -37.71 15.34 -118.73 -1.82 -39.53 16 13 N -1.10 -39.55 5.34 -190.79 -1.02 -40.56 16 14 C 0.12 4.06 6.70 85.64 0.57 4.63 16 15 C 0.43 20.63 7.85 87.66 0.69 21.32 16 16 O -0.63 -34.72 15.30 -3.06 -0.05 -34.76 16 17 N -0.56 -28.13 5.29 -306.97 -1.62 -29.76 16 18 C -0.34 -18.92 9.68 84.04 0.81 -18.10 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.33 5.50 84.93 0.47 0.14 16 21 N -0.91 -47.68 13.05 21.66 0.28 -47.39 16 22 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.21 8.08 -2.38 -0.02 1.20 16 28 H 0.09 2.08 5.53 -2.39 -0.01 2.06 16 29 H 0.22 1.07 8.06 -2.91 -0.02 1.04 16 30 H 0.44 3.45 9.11 -74.06 -0.67 2.77 16 31 H 0.42 17.07 7.45 -96.75 -0.72 16.35 16 32 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.12 3.60 7.75 -2.39 -0.02 3.58 16 34 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 35 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -79.90 334.63 -2.22 -82.12 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.91 Total: 35.80 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.63 Total: -3.65 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -2.36 Total: -117.71 kcal Atomic # 8 Polarization: -129.74 SS G_CDS: -4.03 Total: -133.78 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 94.75 SS G_CDS: -1.58 Total: 93.17 kcal Total: -79.90 -2.22 -82.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600654242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.315 kcal (2) G-P(sol) polarization free energy of solvation -79.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds