Wall clock time and date at job start Wed Apr 1 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47163 * 269.99715 * 3 2 1 5 5 H 1.48505 * 109.47273 * 29.99323 * 3 2 1 6 6 H 1.48493 * 109.47660 * 149.99693 * 3 2 1 7 7 C 1.37878 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99750 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.88576 * 62.42913 * 9 7 2 11 11 C 1.55153 * 111.00591 * 298.54671 * 9 7 2 12 12 C 1.54332 * 102.94237 * 206.38542 * 11 9 7 13 13 N 1.47016 * 107.27019 * 22.19315 * 12 11 9 14 14 S 1.65599 * 125.64881 * 181.01113 * 13 12 11 15 15 O 1.42100 * 106.40638 * 203.56422 * 14 13 12 16 16 O 1.42099 * 106.40261 * 336.48900 * 14 13 12 17 17 C 1.76206 * 107.21582 * 90.02767 * 14 13 12 18 18 S 1.70930 * 125.59000 * 98.73971 * 17 14 13 19 19 C 1.70765 * 91.14131 * 179.97438 * 18 17 14 20 20 N 1.28627 * 110.57960 * 0.29406 * 19 18 17 21 21 C 1.33608 * 115.76810 * 359.77861 * 20 19 18 22 22 C 1.47115 * 123.15561 * 179.97438 * 21 20 19 23 23 O 1.21546 * 119.99837 * 186.23512 * 22 21 20 24 24 O 1.34800 * 119.99836 * 6.23826 * 22 21 20 25 25 C 1.47423 * 108.70400 * 1.06092 * 13 12 11 26 26 H 0.96994 * 120.00160 * 0.02562 * 1 2 3 27 27 H 0.96696 * 113.99937 * 297.57399 * 10 9 7 28 28 H 1.09001 * 110.71722 * 88.02707 * 11 9 7 29 29 H 1.08999 * 110.87569 * 324.81944 * 11 9 7 30 30 H 1.08996 * 109.88027 * 141.61066 * 12 11 9 31 31 H 1.09003 * 109.87917 * 262.77450 * 12 11 9 32 32 H 1.07994 * 124.71596 * 180.10375 * 19 18 17 33 33 H 0.96699 * 117.00228 * 180.02562 * 24 22 21 34 34 H 1.09003 * 110.36597 * 217.02922 * 25 13 12 35 35 H 1.08997 * 110.36805 * 94.70899 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4607 -2.6322 -1.1814 11 6 0.3741 -2.6339 1.2745 12 6 0.2581 -4.1623 1.4541 13 7 1.3934 -4.7723 0.7467 14 16 1.6967 -6.3959 0.6277 15 8 3.0898 -6.5269 0.3801 16 8 1.0424 -7.0082 1.7306 17 6 0.8774 -6.9748 -0.8208 18 16 1.6111 -7.2323 -2.3430 19 6 0.1251 -7.7439 -3.0110 20 7 -0.8075 -7.6992 -2.1263 21 6 -0.4369 -7.2828 -0.9121 22 6 -1.3703 -7.1693 0.2193 23 8 -0.9986 -6.6777 1.2669 24 8 -2.6379 -7.6107 0.0942 25 6 2.2176 -3.6991 0.1616 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2252 -1.9570 -1.2742 28 1 -0.6080 -2.1888 1.1149 29 1 0.8662 -2.1807 2.1350 30 1 0.3022 -4.4154 2.5134 31 1 -0.6794 -4.5159 1.0250 32 1 -0.0133 -8.0581 -4.0349 33 1 -3.2143 -7.5145 0.8646 34 1 2.6058 -4.0057 -0.8097 35 1 3.0359 -3.4402 0.8335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:41 Heat of formation + Delta-G solvation = -143.073616 kcal Electronic energy + Delta-G solvation = -27686.860976 eV Core-core repulsion = 23518.955841 eV Total energy + Delta-G solvation = -4167.905135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81255 -39.14026 -38.07226 -37.00963 -36.06060 -35.57233 -34.27827 -32.23725 -31.25254 -29.22711 -28.28012 -26.93050 -24.87496 -23.76910 -21.62025 -20.82760 -20.04146 -19.71903 -18.44813 -17.78451 -17.41618 -16.97890 -16.88036 -15.95877 -15.93572 -15.41345 -14.99984 -14.89952 -14.54020 -14.29810 -14.08421 -13.42965 -13.37042 -12.92225 -12.44546 -12.39898 -12.00876 -11.96056 -11.89154 -11.78619 -11.63220 -11.41906 -11.31884 -11.03807 -10.73788 -10.57552 -10.50273 -10.45078 -10.30082 -10.13222 -10.00607 -9.45020 -9.38634 -8.71268 -8.39337 -8.22522 -6.29185 -4.37388 -0.29214 0.52329 0.88304 1.26546 1.53578 2.78460 2.87025 3.19108 3.21860 3.27034 3.30773 3.85000 3.95203 4.24990 4.47796 4.81464 4.96978 5.05760 5.41141 5.47612 5.86487 5.97531 6.04993 6.19953 6.32114 6.43843 6.59773 6.78950 6.95235 6.96269 7.04814 7.33664 7.38900 7.72687 7.80330 8.01510 8.65163 9.28104 9.36674 10.78174 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.004244 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.720016 B = 6596.118373 C = 6756.572230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.134 4.134 12 C 0.130 3.870 13 N -0.988 5.988 14 S 2.724 3.276 15 O -0.955 6.955 16 O -0.916 6.916 17 C -0.808 4.808 18 S 0.357 5.643 19 C 0.009 3.991 20 N -0.434 5.434 21 C 0.155 3.845 22 C 0.532 3.468 23 O -0.442 6.442 24 O -0.495 6.495 25 C 0.132 3.868 26 H 0.268 0.732 27 H 0.381 0.619 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.215 0.785 33 H 0.417 0.583 34 H 0.065 0.935 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -13.459 -4.045 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.174 4.174 12 C 0.006 3.994 13 N -0.829 5.829 14 S 2.804 3.196 15 O -0.945 6.945 16 O -0.907 6.907 17 C -1.010 5.010 18 S 0.618 5.382 19 C -0.289 4.289 20 N -0.149 5.149 21 C 0.012 3.988 22 C 0.369 3.631 23 O -0.325 6.325 24 O -0.306 6.306 25 C 0.008 3.992 26 H 0.077 0.923 27 H 0.231 0.769 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.276 0.724 34 H 0.083 0.917 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.051 -14.467 -4.301 15.092 hybrid contribution -1.593 1.553 0.441 2.268 sum -1.643 -12.914 -3.859 13.578 Atomic orbital electron populations 1.69720 1.05982 1.27602 1.50046 1.24987 0.94991 0.99500 0.93496 0.86430 0.79855 0.82481 0.78261 1.20496 1.21129 1.19671 1.21459 0.93737 0.90179 1.52048 0.91623 1.19637 0.86959 0.90516 0.82038 1.86083 1.51573 1.57061 1.44692 1.23198 1.02840 0.90420 1.00892 1.21869 0.86881 0.95671 0.94987 1.58397 1.37658 1.21196 1.65657 1.01510 0.72893 0.72162 0.73008 1.93584 1.28858 1.86050 1.86012 1.93657 1.75635 1.74772 1.46586 1.37370 1.10555 1.24042 1.28993 1.82780 1.10916 1.50457 0.94086 1.28964 0.93470 1.01771 1.04652 1.67121 1.33584 1.14809 0.99337 1.18828 0.88727 0.99461 0.91775 1.19578 0.81240 0.76676 0.85626 1.91226 1.75945 1.38465 1.26894 1.84608 1.22026 1.77069 1.46937 1.22248 0.93549 0.86551 0.96845 0.92256 0.76930 0.89774 0.91324 0.92153 0.92615 0.76857 0.72438 0.91680 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.63 10.76 55.43 0.60 -22.03 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -13.48 8.27 -34.44 -0.28 -13.77 16 8 H 0.07 1.63 7.79 -52.48 -0.41 1.22 16 9 C 0.25 5.82 0.87 -89.62 -0.08 5.74 16 10 O -0.59 -14.09 13.16 -35.23 -0.46 -14.56 16 11 C -0.13 -2.93 5.38 -24.89 -0.13 -3.06 16 12 C 0.13 2.59 5.99 -3.06 -0.02 2.57 16 13 N -0.99 -19.39 3.70 -111.42 -0.41 -19.80 16 14 S 2.72 50.05 5.51 -107.50 -0.59 49.46 16 15 O -0.95 -18.18 17.39 -57.17 -0.99 -19.17 16 16 O -0.92 -18.27 13.90 -67.42 -0.94 -19.21 16 17 C -0.81 -12.99 6.46 29.68 0.19 -12.79 16 18 S 0.36 4.24 22.72 -107.50 -2.44 1.80 16 19 C 0.01 0.09 12.17 51.42 0.63 0.72 16 20 N -0.43 -6.19 10.60 -12.38 -0.13 -6.33 16 21 C 0.16 2.50 6.70 -84.54 -0.57 1.93 16 22 C 0.53 8.48 8.22 34.33 0.28 8.76 16 23 O -0.44 -7.91 10.40 -27.68 -0.29 -8.20 16 24 O -0.50 -6.16 13.37 -40.76 -0.55 -6.70 16 25 C 0.13 2.76 6.16 -2.53 -0.02 2.74 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 27 H 0.38 9.32 7.56 45.56 0.34 9.67 16 28 H 0.08 1.93 7.55 -51.93 -0.39 1.54 16 29 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.09 6.45 -51.93 -0.33 0.76 16 32 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.42 2.97 9.11 45.56 0.42 3.38 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -32.22 325.07 -8.04 -40.25 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -1.61 Total: 10.25 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.09 Total: -5.42 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.05 Total: -48.16 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -3.23 Total: -67.84 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 54.29 SS G_CDS: -3.03 Total: 51.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.22 -8.04 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.821 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds