Wall clock time and date at job start Wed Apr 1 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47163 * 269.99715 * 3 2 1 5 5 H 1.48505 * 109.47273 * 29.99323 * 3 2 1 6 6 H 1.48493 * 109.47660 * 149.99693 * 3 2 1 7 7 C 1.37878 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99750 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.88576 * 62.42913 * 9 7 2 11 11 C 1.55153 * 111.00591 * 298.54671 * 9 7 2 12 12 C 1.54332 * 102.94237 * 206.38542 * 11 9 7 13 13 N 1.47016 * 107.27019 * 22.19315 * 12 11 9 14 14 S 1.65599 * 125.64881 * 181.01113 * 13 12 11 15 15 O 1.42100 * 106.40638 * 203.56422 * 14 13 12 16 16 O 1.42099 * 106.40261 * 336.48900 * 14 13 12 17 17 C 1.76206 * 107.21582 * 90.02767 * 14 13 12 18 18 S 1.70930 * 125.59000 * 98.73971 * 17 14 13 19 19 C 1.70765 * 91.14131 * 179.97438 * 18 17 14 20 20 N 1.28627 * 110.57960 * 0.29406 * 19 18 17 21 21 C 1.33608 * 115.76810 * 359.77861 * 20 19 18 22 22 C 1.47115 * 123.15561 * 179.97438 * 21 20 19 23 23 O 1.21546 * 119.99837 * 186.23512 * 22 21 20 24 24 O 1.34800 * 119.99836 * 6.23826 * 22 21 20 25 25 C 1.47423 * 108.70400 * 1.06092 * 13 12 11 26 26 H 0.96994 * 120.00160 * 0.02562 * 1 2 3 27 27 H 0.96696 * 113.99937 * 297.57399 * 10 9 7 28 28 H 1.09001 * 110.71722 * 88.02707 * 11 9 7 29 29 H 1.08999 * 110.87569 * 324.81944 * 11 9 7 30 30 H 1.08996 * 109.88027 * 141.61066 * 12 11 9 31 31 H 1.09003 * 109.87917 * 262.77450 * 12 11 9 32 32 H 1.07994 * 124.71596 * 180.10375 * 19 18 17 33 33 H 0.96699 * 117.00228 * 180.02562 * 24 22 21 34 34 H 1.09003 * 110.36597 * 217.02922 * 25 13 12 35 35 H 1.08997 * 110.36805 * 94.70899 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4607 -2.6322 -1.1814 11 6 0.3741 -2.6339 1.2745 12 6 0.2581 -4.1623 1.4541 13 7 1.3934 -4.7723 0.7467 14 16 1.6967 -6.3959 0.6277 15 8 3.0898 -6.5269 0.3801 16 8 1.0424 -7.0082 1.7306 17 6 0.8774 -6.9748 -0.8208 18 16 1.6111 -7.2323 -2.3430 19 6 0.1251 -7.7439 -3.0110 20 7 -0.8075 -7.6992 -2.1263 21 6 -0.4369 -7.2828 -0.9121 22 6 -1.3703 -7.1693 0.2193 23 8 -0.9986 -6.6777 1.2669 24 8 -2.6379 -7.6107 0.0942 25 6 2.2176 -3.6991 0.1616 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2252 -1.9570 -1.2742 28 1 -0.6080 -2.1888 1.1149 29 1 0.8662 -2.1807 2.1350 30 1 0.3022 -4.4154 2.5134 31 1 -0.6794 -4.5159 1.0250 32 1 -0.0133 -8.0581 -4.0349 33 1 -3.2143 -7.5145 0.8646 34 1 2.6058 -4.0057 -0.8097 35 1 3.0359 -3.4402 0.8335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:40 Heat of formation + Delta-G solvation = -171.020042 kcal Electronic energy + Delta-G solvation = -27688.072824 eV Core-core repulsion = 23518.955841 eV Total energy + Delta-G solvation = -4169.116983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91591 -40.22345 -39.78151 -38.43985 -37.22384 -37.02465 -36.04552 -34.15655 -32.33589 -30.94251 -29.99851 -28.02431 -26.71367 -24.77959 -23.21113 -22.04494 -21.68242 -20.95158 -19.89693 -19.10083 -18.91484 -18.57944 -18.08304 -17.13541 -17.08678 -16.92272 -16.78745 -16.23933 -15.94298 -15.68142 -15.44306 -15.07617 -14.59559 -14.46739 -14.13719 -13.68494 -13.55079 -13.46205 -13.42228 -13.22468 -13.13395 -12.94762 -12.78808 -12.70676 -12.41486 -12.25835 -12.15356 -11.83324 -11.77158 -11.45573 -11.21257 -11.12904 -10.60435 -10.37636 -10.09869 -9.96868 -8.19042 -6.33467 -1.40224 -0.84133 -0.14465 0.30326 0.51248 1.45315 1.48717 1.56904 1.66849 1.74936 1.86064 2.42806 2.48900 2.98651 3.05824 3.21262 3.66201 3.70732 4.10140 4.16274 4.28489 4.40905 4.52995 4.56621 4.70839 4.93861 5.18502 5.23093 5.32423 5.42682 5.51227 5.57644 5.82041 5.98530 6.13725 6.71598 6.80778 7.35608 7.43030 8.86723 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.004244 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.720016 B = 6596.118373 C = 6756.572230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.237 3.763 10 O -0.588 6.588 11 C -0.126 4.126 12 C 0.139 3.861 13 N -0.994 5.994 14 S 2.739 3.261 15 O -0.967 6.967 16 O -0.937 6.937 17 C -0.845 4.845 18 S 0.397 5.603 19 C 0.033 3.967 20 N -0.458 5.458 21 C 0.147 3.853 22 C 0.528 3.472 23 O -0.470 6.470 24 O -0.487 6.487 25 C 0.134 3.866 26 H 0.269 0.731 27 H 0.376 0.624 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.268 0.732 33 H 0.437 0.563 34 H 0.073 0.927 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -14.225 -5.626 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.081 0.919 9 C 0.196 3.804 10 O -0.396 6.396 11 C -0.166 4.166 12 C 0.014 3.986 13 N -0.834 5.834 14 S 2.824 3.176 15 O -0.958 6.958 16 O -0.927 6.927 17 C -1.052 5.052 18 S 0.659 5.341 19 C -0.263 4.263 20 N -0.172 5.172 21 C 0.002 3.998 22 C 0.366 3.634 23 O -0.357 6.357 24 O -0.301 6.301 25 C 0.010 3.990 26 H 0.078 0.922 27 H 0.225 0.775 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.283 0.717 33 H 0.300 0.700 34 H 0.091 0.909 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.096 -15.232 -5.859 16.321 hybrid contribution -1.688 1.693 0.803 2.522 sum -1.592 -13.540 -5.056 14.541 Atomic orbital electron populations 1.69801 1.06771 1.28155 1.50130 1.25612 0.95738 1.02031 0.93232 0.85555 0.78764 0.79178 0.78062 1.20389 1.21004 1.19469 1.21729 0.93861 0.91394 1.52519 0.91920 1.19785 0.87445 0.91031 0.82094 1.86072 1.51486 1.56788 1.45281 1.23023 1.01618 0.91845 1.00083 1.21723 0.87208 0.94113 0.95551 1.58365 1.37353 1.21569 1.66103 1.00692 0.72432 0.71375 0.73137 1.93562 1.29760 1.86003 1.86433 1.93630 1.75905 1.74760 1.48413 1.36979 1.11267 1.26644 1.30261 1.82620 1.10791 1.49241 0.91438 1.29858 0.92013 0.98493 1.05895 1.67184 1.34664 1.16229 0.99158 1.19012 0.88674 0.99463 0.92641 1.19783 0.82033 0.76191 0.85398 1.91202 1.76633 1.39917 1.27919 1.84568 1.21066 1.76192 1.48281 1.22149 0.93219 0.86152 0.97503 0.92208 0.77520 0.91252 0.92080 0.91446 0.92484 0.71679 0.69996 0.90891 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.15 10.76 21.45 0.23 -45.92 16 2 C 0.04 1.75 5.29 84.65 0.45 2.20 16 3 Si 0.96 40.32 29.54 68.60 2.03 42.34 16 4 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -28.07 8.27 25.60 0.21 -27.86 16 8 H 0.06 3.12 7.79 -2.91 -0.02 3.09 16 9 C 0.24 11.12 0.87 -10.15 -0.01 11.11 16 10 O -0.59 -28.42 13.16 -148.98 -1.96 -30.38 16 11 C -0.13 -5.60 5.38 31.78 0.17 -5.43 16 12 C 0.14 5.56 5.99 86.73 0.52 6.08 16 13 N -0.99 -38.98 3.70 -506.43 -1.87 -40.85 16 14 S 2.74 99.99 5.51 -56.49 -0.31 99.68 16 15 O -0.97 -36.34 17.39 -128.00 -2.23 -38.57 16 16 O -0.94 -37.59 13.90 -118.20 -1.64 -39.23 16 17 C -0.85 -26.23 6.46 67.14 0.43 -25.80 16 18 S 0.40 8.42 22.72 -56.49 -1.28 7.14 16 19 C 0.03 0.58 12.17 130.71 1.59 2.17 16 20 N -0.46 -11.92 10.60 -193.10 -2.05 -13.96 16 21 C 0.15 4.56 6.70 40.52 0.27 4.83 16 22 C 0.53 16.55 8.22 70.15 0.58 17.12 16 23 O -0.47 -16.90 10.40 27.70 0.29 -16.61 16 24 O -0.49 -11.56 13.37 -57.12 -0.76 -12.32 16 25 C 0.13 5.58 6.16 86.86 0.54 6.11 16 26 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 27 H 0.38 18.64 7.56 -74.06 -0.56 18.08 16 28 H 0.07 3.25 7.55 -2.39 -0.02 3.23 16 29 H 0.06 2.75 8.04 -2.39 -0.02 2.73 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.06 2.26 6.45 -2.39 -0.02 2.25 16 32 H 0.27 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.44 5.72 9.11 -74.06 -0.67 5.04 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16 Total: -1.00 -68.88 325.07 -4.86 -73.73 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.04 Total: 24.42 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.75 Total: -9.46 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.69 Total: -100.74 kcal Atomic # 8 Polarization: -130.81 SS G_CDS: -6.31 Total: -137.12 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 108.41 SS G_CDS: -1.59 Total: 106.82 kcal Total: -68.88 -4.86 -73.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.288 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds