Wall clock time and date at job start Wed Apr 1 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48500 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47416 * 300.00587 * 3 2 1 6 6 H 1.48509 * 109.47028 * 60.00301 * 3 2 1 7 7 C 1.37866 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91882 * 297.55468 * 9 7 2 11 11 C 1.55165 * 111.00281 * 61.45698 * 9 7 2 12 12 C 1.54327 * 102.94078 * 153.57654 * 11 9 7 13 13 N 1.47022 * 107.27336 * 337.80587 * 12 11 9 14 14 S 1.65596 * 125.64668 * 178.97441 * 13 12 11 15 15 O 1.42098 * 106.40333 * 203.51697 * 14 13 12 16 16 O 1.42102 * 106.40567 * 336.44052 * 14 13 12 17 17 C 1.76207 * 107.21540 * 89.97849 * 14 13 12 18 18 S 1.70931 * 125.59054 * 0.02562 * 17 14 13 19 19 C 1.70763 * 91.13875 * 179.97438 * 18 17 14 20 20 N 1.28619 * 110.58533 * 0.02562 * 19 18 17 21 21 C 1.33603 * 115.76428 * 359.75759 * 20 19 18 22 22 C 1.47120 * 123.15314 * 180.27968 * 21 20 19 23 23 O 1.21559 * 119.99761 * 180.17494 * 22 21 20 24 24 O 1.34792 * 120.00445 * 0.17349 * 22 21 20 25 25 C 1.47425 * 108.70334 * 358.94217 * 13 12 11 26 26 H 0.97003 * 120.00526 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99787 * 62.44258 * 10 9 7 28 28 H 1.08993 * 110.71917 * 35.21385 * 11 9 7 29 29 H 1.09002 * 110.71751 * 271.93956 * 11 9 7 30 30 H 1.08997 * 109.87800 * 97.22770 * 12 11 9 31 31 H 1.08998 * 109.87662 * 218.38556 * 12 11 9 32 32 H 1.08002 * 124.70851 * 180.02562 * 19 18 17 33 33 H 0.96691 * 117.00499 * 180.02562 * 24 22 21 34 34 H 1.08997 * 110.36855 * 142.96531 * 25 13 12 35 35 H 1.08999 * 110.36490 * 265.17846 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4618 -2.6325 1.1832 11 6 0.3732 -2.6344 -1.2727 12 6 0.2581 -4.1629 -1.4522 13 7 1.3942 -4.7722 -0.7455 14 16 1.6984 -6.3957 -0.6265 15 8 2.5006 -6.5696 0.5334 16 8 0.4524 -7.0523 -0.8154 17 6 2.7079 -6.8392 -2.0009 18 16 3.2579 -5.7714 -3.2170 19 6 4.0791 -7.0419 -4.0090 20 7 3.9202 -8.1487 -3.3733 21 6 3.1787 -8.0800 -2.2641 22 6 2.8980 -9.2449 -1.4105 23 8 2.2127 -9.1176 -0.4146 24 8 3.4008 -10.4533 -1.7326 25 6 2.2183 -3.6985 -0.1611 26 1 -0.4851 0.8400 0.0004 27 1 -0.2246 -1.9577 1.2763 28 1 0.8672 -2.1814 -2.1322 29 1 -0.6090 -2.1898 -1.1125 30 1 -0.6789 -4.5170 -1.0224 31 1 0.3014 -4.4160 -2.5115 32 1 4.6525 -6.9315 -4.9176 33 1 3.1889 -11.1887 -1.1417 34 1 2.6073 -4.0047 0.8100 35 1 3.0371 -3.4405 -0.8328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:44 Heat of formation + Delta-G solvation = -150.167950 kcal Electronic energy + Delta-G solvation = -27009.573555 eV Core-core repulsion = 22841.360786 eV Total energy + Delta-G solvation = -4168.212769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06011 -39.39691 -38.16403 -36.91004 -36.52564 -35.53186 -34.34667 -32.25601 -31.44271 -29.34751 -28.37966 -27.14651 -24.93735 -23.99890 -21.82250 -20.90953 -20.18559 -19.92320 -18.51992 -18.09596 -17.38918 -17.04420 -16.80582 -16.39120 -16.23001 -15.48245 -15.01279 -15.00226 -14.68676 -14.44236 -14.24928 -13.72983 -13.42025 -12.97592 -12.55570 -12.54043 -12.03161 -11.92462 -11.86180 -11.82439 -11.70438 -11.58995 -11.39411 -11.27549 -11.08050 -10.86354 -10.57174 -10.48481 -10.45672 -10.31936 -10.07913 -9.59714 -9.44992 -8.76008 -8.56953 -8.23928 -6.32306 -4.41055 -0.42367 0.34479 0.68558 1.10326 1.28146 2.49604 2.62711 3.15295 3.18209 3.25481 3.28683 3.72548 3.87609 4.21841 4.45122 4.70101 4.79557 4.94855 5.25585 5.31821 5.67994 5.83387 5.89401 6.01587 6.14956 6.29942 6.50500 6.65950 6.76546 6.83760 6.92860 7.26337 7.32905 7.47634 7.69375 7.97907 8.61745 9.27559 9.38080 10.74993 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.003679 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.868542 B = 7609.756091 C = 8289.090589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.254 3.746 10 O -0.581 6.581 11 C -0.131 4.131 12 C 0.116 3.884 13 N -1.006 6.006 14 S 2.733 3.267 15 O -0.926 6.926 16 O -0.931 6.931 17 C -0.800 4.800 18 S 0.363 5.637 19 C 0.006 3.994 20 N -0.430 5.430 21 C 0.140 3.860 22 C 0.552 3.448 23 O -0.483 6.483 24 O -0.486 6.486 25 C 0.125 3.875 26 H 0.268 0.732 27 H 0.381 0.619 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.217 0.783 33 H 0.420 0.580 34 H 0.079 0.921 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -11.108 -10.269 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.213 3.787 10 O -0.390 6.390 11 C -0.171 4.171 12 C -0.009 4.009 13 N -0.849 5.849 14 S 2.812 3.188 15 O -0.916 6.916 16 O -0.921 6.921 17 C -1.001 5.001 18 S 0.623 5.377 19 C -0.291 4.291 20 N -0.145 5.145 21 C -0.002 4.002 22 C 0.391 3.609 23 O -0.370 6.370 24 O -0.297 6.297 25 C 0.001 3.999 26 H 0.078 0.922 27 H 0.231 0.769 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.234 0.766 33 H 0.280 0.720 34 H 0.097 0.903 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.016 -11.268 -10.074 16.268 hybrid contribution 0.263 0.142 -0.070 0.307 sum 6.280 -11.126 -10.144 16.313 Atomic orbital electron populations 1.69727 1.05960 1.27584 1.49902 1.24980 0.94994 0.99481 0.93470 0.86384 0.80120 0.82838 0.77714 1.19607 1.20888 1.20812 1.21485 0.93753 0.90095 1.52196 0.91567 1.19571 0.86889 0.90141 0.82149 1.86147 1.51511 1.56994 1.44322 1.23194 1.03245 0.89626 1.01049 1.21968 0.87806 0.97092 0.93988 1.58701 1.36379 1.22512 1.67260 1.01420 0.73499 0.71174 0.72669 1.93577 1.71068 1.84616 1.42358 1.93561 1.40104 1.72886 1.85576 1.37514 1.26406 1.06001 1.30209 1.83049 1.36232 1.09422 1.08966 1.28987 1.03093 0.92146 1.04920 1.67121 1.14513 1.27873 1.04985 1.18685 0.97806 0.89855 0.93846 1.19548 0.76480 0.82648 0.82212 1.91058 1.35392 1.85051 1.25472 1.84616 1.70664 1.18191 1.56250 1.22331 0.93529 0.86522 0.97545 0.92228 0.76865 0.91206 0.89370 0.91491 0.93170 0.76615 0.72045 0.90251 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.91 10.76 55.43 0.60 -21.31 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 19.15 29.54 -169.99 -5.02 14.13 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -13.03 8.27 -34.45 -0.28 -13.31 16 8 H 0.07 1.58 7.79 -52.48 -0.41 1.17 16 9 C 0.25 5.76 0.87 -89.62 -0.08 5.68 16 10 O -0.58 -14.28 13.16 -35.23 -0.46 -14.75 16 11 C -0.13 -2.63 5.38 -24.89 -0.13 -2.77 16 12 C 0.12 2.05 6.99 -3.06 -0.02 2.03 16 13 N -1.01 -18.69 3.47 -111.42 -0.39 -19.08 16 14 S 2.73 52.23 4.47 -107.50 -0.48 51.75 16 15 O -0.93 -20.07 16.54 -64.15 -1.06 -21.13 16 16 O -0.93 -19.58 16.84 -64.02 -1.08 -20.65 16 17 C -0.80 -12.33 6.38 29.68 0.19 -12.14 16 18 S 0.36 3.86 22.70 -107.50 -2.44 1.42 16 19 C 0.01 0.06 12.17 51.42 0.63 0.68 16 20 N -0.43 -5.53 10.60 -12.38 -0.13 -5.66 16 21 C 0.14 2.13 6.71 -84.54 -0.57 1.56 16 22 C 0.55 8.44 8.31 34.33 0.29 8.72 16 23 O -0.48 -8.82 14.35 -27.94 -0.40 -9.23 16 24 O -0.49 -5.35 13.37 -40.74 -0.54 -5.90 16 25 C 0.12 2.49 6.28 -2.53 -0.02 2.47 16 26 H 0.27 6.32 8.31 -40.82 -0.34 5.99 16 27 H 0.38 9.33 7.57 45.56 0.34 9.67 16 28 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 29 H 0.09 1.88 7.55 -51.93 -0.39 1.49 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.42 2.29 9.11 45.56 0.42 2.70 16 34 H 0.08 1.66 7.78 -51.93 -0.40 1.26 16 35 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -33.61 332.27 -8.18 -41.79 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -1.68 Total: 8.98 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.09 Total: -5.37 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.08 Total: -46.06 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -3.55 Total: -71.65 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -2.92 Total: 53.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.61 -8.18 -41.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.378 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds