Wall clock time and date at job start Wed Apr 1 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48500 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47416 * 300.00587 * 3 2 1 6 6 H 1.48509 * 109.47028 * 60.00301 * 3 2 1 7 7 C 1.37866 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91882 * 297.55468 * 9 7 2 11 11 C 1.55165 * 111.00281 * 61.45698 * 9 7 2 12 12 C 1.54327 * 102.94078 * 153.57654 * 11 9 7 13 13 N 1.47022 * 107.27336 * 337.80587 * 12 11 9 14 14 S 1.65596 * 125.64668 * 178.97441 * 13 12 11 15 15 O 1.42098 * 106.40333 * 203.51697 * 14 13 12 16 16 O 1.42102 * 106.40567 * 336.44052 * 14 13 12 17 17 C 1.76207 * 107.21540 * 89.97849 * 14 13 12 18 18 S 1.70931 * 125.59054 * 0.02562 * 17 14 13 19 19 C 1.70763 * 91.13875 * 179.97438 * 18 17 14 20 20 N 1.28619 * 110.58533 * 0.02562 * 19 18 17 21 21 C 1.33603 * 115.76428 * 359.75759 * 20 19 18 22 22 C 1.47120 * 123.15314 * 180.27968 * 21 20 19 23 23 O 1.21559 * 119.99761 * 180.17494 * 22 21 20 24 24 O 1.34792 * 120.00445 * 0.17349 * 22 21 20 25 25 C 1.47425 * 108.70334 * 358.94217 * 13 12 11 26 26 H 0.97003 * 120.00526 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99787 * 62.44258 * 10 9 7 28 28 H 1.08993 * 110.71917 * 35.21385 * 11 9 7 29 29 H 1.09002 * 110.71751 * 271.93956 * 11 9 7 30 30 H 1.08997 * 109.87800 * 97.22770 * 12 11 9 31 31 H 1.08998 * 109.87662 * 218.38556 * 12 11 9 32 32 H 1.08002 * 124.70851 * 180.02562 * 19 18 17 33 33 H 0.96691 * 117.00499 * 180.02562 * 24 22 21 34 34 H 1.08997 * 110.36855 * 142.96531 * 25 13 12 35 35 H 1.08999 * 110.36490 * 265.17846 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4618 -2.6325 1.1832 11 6 0.3732 -2.6344 -1.2727 12 6 0.2581 -4.1629 -1.4522 13 7 1.3942 -4.7722 -0.7455 14 16 1.6984 -6.3957 -0.6265 15 8 2.5006 -6.5696 0.5334 16 8 0.4524 -7.0523 -0.8154 17 6 2.7079 -6.8392 -2.0009 18 16 3.2579 -5.7714 -3.2170 19 6 4.0791 -7.0419 -4.0090 20 7 3.9202 -8.1487 -3.3733 21 6 3.1787 -8.0800 -2.2641 22 6 2.8980 -9.2449 -1.4105 23 8 2.2127 -9.1176 -0.4146 24 8 3.4008 -10.4533 -1.7326 25 6 2.2183 -3.6985 -0.1611 26 1 -0.4851 0.8400 0.0004 27 1 -0.2246 -1.9577 1.2763 28 1 0.8672 -2.1814 -2.1322 29 1 -0.6090 -2.1898 -1.1125 30 1 -0.6789 -4.5170 -1.0224 31 1 0.3014 -4.4160 -2.5115 32 1 4.6525 -6.9315 -4.9176 33 1 3.1889 -11.1887 -1.1417 34 1 2.6073 -4.0047 0.8100 35 1 3.0371 -3.4405 -0.8328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:43 Heat of formation + Delta-G solvation = -179.839009 kcal Electronic energy + Delta-G solvation = -27010.860188 eV Core-core repulsion = 22841.360786 eV Total energy + Delta-G solvation = -4169.499403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10404 -40.39957 -39.79143 -38.46368 -37.58565 -37.06421 -36.08169 -34.13036 -32.44978 -30.97587 -29.99956 -28.18448 -26.70332 -24.92256 -23.29503 -22.08242 -21.64341 -21.21337 -19.88452 -19.31025 -19.03750 -18.35865 -18.10815 -17.53849 -17.29185 -16.98077 -16.80901 -16.19190 -15.98443 -15.80085 -15.57166 -15.09258 -14.71993 -14.55977 -14.17402 -13.69154 -13.49835 -13.48452 -13.43597 -13.31003 -13.13300 -12.94069 -12.90224 -12.77722 -12.55419 -12.44366 -12.22056 -12.13142 -11.81365 -11.49068 -11.20760 -11.17242 -10.58070 -10.46503 -10.07269 -10.04548 -8.15215 -6.29922 -1.44974 -1.07249 -0.25907 0.23875 0.34259 1.47404 1.48780 1.53429 1.57546 1.61780 1.84496 2.44922 2.48041 2.88971 3.09917 3.21591 3.47497 3.73715 3.96704 4.11647 4.30256 4.38366 4.45866 4.65176 4.70743 4.93331 5.05945 5.16999 5.22944 5.35630 5.54393 5.65540 5.86948 5.89973 6.17642 6.57603 6.75809 7.40505 7.48899 8.90740 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.003679 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.868542 B = 7609.756091 C = 8289.090589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.036 3.964 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.554 4.554 8 H 0.066 0.934 9 C 0.232 3.768 10 O -0.597 6.597 11 C -0.120 4.120 12 C 0.116 3.884 13 N -1.008 6.008 14 S 2.747 3.253 15 O -0.966 6.966 16 O -0.962 6.962 17 C -0.838 4.838 18 S 0.416 5.584 19 C 0.034 3.966 20 N -0.449 5.449 21 C 0.133 3.867 22 C 0.548 3.452 23 O -0.525 6.525 24 O -0.472 6.472 25 C 0.129 3.871 26 H 0.268 0.732 27 H 0.377 0.623 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.273 0.727 33 H 0.442 0.558 34 H 0.060 0.940 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.718 -10.960 -13.242 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.592 4.592 8 H 0.084 0.916 9 C 0.191 3.809 10 O -0.406 6.406 11 C -0.159 4.159 12 C -0.008 4.008 13 N -0.849 5.849 14 S 2.833 3.167 15 O -0.956 6.956 16 O -0.952 6.952 17 C -1.045 5.045 18 S 0.678 5.322 19 C -0.262 4.262 20 N -0.164 5.164 21 C -0.012 4.012 22 C 0.389 3.611 23 O -0.415 6.415 24 O -0.286 6.286 25 C 0.004 3.996 26 H 0.078 0.922 27 H 0.226 0.774 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.288 0.712 33 H 0.305 0.695 34 H 0.079 0.921 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.805 -11.118 -13.031 18.824 hybrid contribution -0.208 0.043 0.748 0.778 sum 7.597 -11.074 -12.283 18.200 Atomic orbital electron populations 1.69813 1.06797 1.28092 1.50110 1.25594 0.95685 1.01956 0.93278 0.85512 0.79159 0.79548 0.77338 1.19242 1.20299 1.21580 1.21738 0.93937 0.91082 1.52451 0.91606 1.19903 0.87699 0.90843 0.82443 1.86148 1.51650 1.56893 1.45867 1.22990 1.01734 0.91203 1.00012 1.22028 0.87215 0.95328 0.96244 1.58524 1.36672 1.22023 1.67728 1.00328 0.72947 0.70679 0.72772 1.93520 1.71655 1.85004 1.45400 1.93512 1.42054 1.73339 1.86318 1.36878 1.28412 1.07924 1.31306 1.82823 1.34824 1.08134 1.06426 1.29924 1.00835 0.90418 1.05045 1.67200 1.15104 1.29380 1.04685 1.18855 0.98123 0.89558 0.94660 1.19828 0.75796 0.83798 0.81671 1.91040 1.37429 1.85775 1.27289 1.84578 1.69620 1.17774 1.56582 1.22278 0.93755 0.85835 0.97697 0.92226 0.77406 0.90234 0.91151 0.92435 0.89003 0.71191 0.69454 0.92112 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.67 10.76 21.44 0.23 -44.44 16 2 C 0.04 1.74 5.29 84.65 0.45 2.18 16 3 Si 0.96 38.73 29.54 68.60 2.03 40.75 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -26.66 8.27 25.60 0.21 -26.45 16 8 H 0.07 3.09 7.79 -2.91 -0.02 3.07 16 9 C 0.23 10.55 0.87 -10.14 -0.01 10.54 16 10 O -0.60 -30.20 13.16 -148.98 -1.96 -32.16 16 11 C -0.12 -4.72 5.38 31.79 0.17 -4.55 16 12 C 0.12 4.00 6.99 86.73 0.61 4.60 16 13 N -1.01 -37.09 3.47 -506.42 -1.76 -38.85 16 14 S 2.75 106.22 4.47 -56.49 -0.25 105.97 16 15 O -0.97 -43.36 16.54 -121.33 -2.01 -45.37 16 16 O -0.96 -41.43 16.84 -121.46 -2.05 -43.47 16 17 C -0.84 -24.70 6.38 67.14 0.43 -24.27 16 18 S 0.42 7.33 22.70 -56.49 -1.28 6.05 16 19 C 0.03 0.46 12.17 130.71 1.59 2.05 16 20 N -0.45 -10.09 10.60 -193.10 -2.05 -12.14 16 21 C 0.13 3.85 6.71 40.53 0.27 4.12 16 22 C 0.55 16.63 8.31 70.15 0.58 17.21 16 23 O -0.53 -19.77 14.35 27.90 0.40 -19.37 16 24 O -0.47 -9.82 13.37 -57.03 -0.76 -10.58 16 25 C 0.13 5.10 6.28 86.86 0.55 5.64 16 26 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 27 H 0.38 19.11 7.57 -74.06 -0.56 18.55 16 28 H 0.08 2.94 8.03 -2.39 -0.02 2.92 16 29 H 0.07 3.02 7.55 -2.39 -0.02 3.00 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.27 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.44 4.30 9.11 -74.06 -0.67 3.63 16 34 H 0.06 2.60 7.78 -2.39 -0.02 2.59 16 35 H 0.10 3.35 8.03 -2.39 -0.02 3.33 16 Total: -1.00 -75.50 332.27 -4.65 -80.15 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.05 Total: 22.40 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.85 Total: -8.93 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -3.57 Total: -95.43 kcal Atomic # 8 Polarization: -144.58 SS G_CDS: -6.38 Total: -150.95 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: 113.55 SS G_CDS: -1.53 Total: 112.01 kcal Total: -75.50 -4.65 -80.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.687 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds