Wall clock time and date at job start Wed Apr 1 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48503 * 109.46977 * 270.00220 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00097 * 3 2 1 6 6 H 1.48497 * 109.47040 * 150.00200 * 3 2 1 7 7 C 1.38970 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00263 * 198.50283 * 7 2 1 9 9 N 1.36972 * 119.99863 * 18.50195 * 7 2 1 10 10 C 1.46507 * 120.00044 * 218.58837 * 9 7 2 11 11 C 1.53004 * 109.46770 * 277.75875 * 10 9 7 12 12 C 1.50695 * 109.46834 * 179.97438 * 11 10 9 13 13 O 1.20819 * 120.00446 * 359.97438 * 12 11 10 14 14 O 1.34237 * 120.00132 * 180.02562 * 12 11 10 15 15 C 1.34772 * 120.00001 * 38.58731 * 9 7 2 16 16 O 1.21664 * 120.00441 * 6.11467 * 15 9 7 17 17 C 1.47113 * 120.00029 * 186.12038 * 15 9 7 18 18 C 1.44448 * 123.46844 * 328.98308 * 17 15 9 19 19 C 1.32765 * 113.08445 * 180.27890 * 18 17 15 20 20 S 1.75497 * 110.59440 * 359.78312 * 19 18 17 21 21 C 1.36088 * 123.47488 * 148.84305 * 17 15 9 22 22 S 1.76202 * 124.59590 * 0.02562 * 21 17 15 23 23 N 1.65594 * 107.22055 * 179.71847 * 22 21 17 24 24 O 1.42101 * 106.40105 * 293.26310 * 22 21 17 25 25 O 1.42107 * 106.39871 * 66.17984 * 22 21 17 26 26 H 0.96996 * 119.99907 * 4.89935 * 1 2 3 27 27 H 1.09001 * 109.46850 * 37.75607 * 10 9 7 28 28 H 1.08994 * 109.47076 * 157.75964 * 10 9 7 29 29 H 1.08997 * 109.47598 * 299.99808 * 11 10 9 30 30 H 1.09007 * 109.47158 * 59.99895 * 11 10 9 31 31 H 0.96695 * 117.00202 * 179.97438 * 14 12 11 32 32 H 1.07999 * 123.45962 * 0.03864 * 18 17 15 33 33 H 1.08001 * 124.69945 * 179.79857 * 19 18 17 34 34 H 0.97005 * 120.00263 * 269.99992 * 23 22 21 35 35 H 0.97001 * 120.00296 * 90.00400 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0090 -1.2035 -0.0005 8 1 3.0472 -1.2279 0.2963 9 7 1.3773 -2.3589 -0.3775 10 6 1.6586 -3.6115 0.3284 11 6 2.9409 -4.2335 -0.2280 12 6 3.2307 -5.5216 0.4986 13 8 2.4880 -5.9027 1.3720 14 8 4.3144 -6.2450 0.1760 15 6 0.4968 -2.3435 -1.3978 16 8 0.3454 -1.3312 -2.0554 17 6 -0.2812 -3.5507 -1.7162 18 6 0.2083 -4.8930 -1.5037 19 6 -0.6610 -5.8279 -1.8684 20 16 -2.1312 -5.0962 -2.4872 21 6 -1.5374 -3.5179 -2.2388 22 16 -2.4261 -2.0439 -2.6155 23 7 -3.8937 -2.5002 -3.2321 24 8 -2.6931 -1.4078 -1.3731 25 8 -1.7238 -1.4121 -3.6771 26 1 -0.4850 0.8370 -0.0717 27 1 1.7849 -3.4087 1.3919 28 1 0.8281 -4.3029 0.1865 29 1 2.8147 -4.4363 -1.2915 30 1 3.7715 -3.5419 -0.0860 31 1 4.4587 -7.0637 0.6699 32 1 1.1829 -5.1135 -1.0941 33 1 -0.4875 -6.8913 -1.7942 34 1 -3.9978 -2.6353 -4.1870 35 1 -4.6493 -2.6324 -2.6384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:29 Heat of formation + Delta-G solvation = -127.999746 kcal Electronic energy + Delta-G solvation = -27489.857193 eV Core-core repulsion = 23322.605709 eV Total energy + Delta-G solvation = -4167.251483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.32629 -39.11603 -36.35957 -36.30438 -36.17631 -35.08090 -34.78704 -32.99444 -32.31071 -30.38208 -29.57020 -26.21012 -24.57105 -23.46828 -21.07687 -20.54331 -20.04810 -18.70128 -18.39908 -18.06504 -17.17986 -16.68260 -16.56882 -16.15790 -15.90342 -15.46714 -14.84049 -14.60417 -14.48816 -14.32523 -13.81303 -13.67676 -13.28813 -12.96484 -12.50304 -12.26802 -12.10164 -11.57533 -11.51889 -11.50772 -11.37183 -11.26720 -11.20176 -10.99885 -10.87479 -10.73308 -10.67498 -10.62430 -10.47578 -10.28595 -10.18350 -9.05257 -8.94115 -8.40177 -8.05584 -7.31409 -6.14266 -3.93627 0.76072 0.94911 1.68902 1.98716 2.26312 2.39949 3.07379 3.33957 3.40512 3.44536 3.76966 4.16936 4.41198 4.44374 4.77910 5.00111 5.06777 5.24360 5.28311 5.34165 5.37592 5.51499 5.75656 5.82516 5.99806 6.05597 6.15070 6.19050 6.44120 6.45177 6.58792 7.28307 7.49550 7.92428 8.08393 8.84946 8.97752 9.45516 10.04701 10.89727 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008633 B = 0.006919 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.676537 B = 4045.957865 C = 6847.591452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.063 3.937 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.346 4.346 8 H 0.089 0.911 9 N -0.423 5.423 10 C 0.090 3.910 11 C -0.139 4.139 12 C 0.481 3.519 13 O -0.514 6.514 14 O -0.520 6.520 15 C 0.487 3.513 16 O -0.508 6.508 17 C 0.023 3.977 18 C -0.148 4.148 19 C -0.197 4.197 20 S 0.202 5.798 21 C -0.785 4.785 22 S 2.722 3.278 23 N -1.258 6.258 24 O -0.918 6.918 25 O -0.926 6.926 26 H 0.274 0.726 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.405 0.595 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.415 0.585 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -14.111 -3.784 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.472 4.472 8 H 0.107 0.893 9 N -0.142 5.142 10 C -0.034 4.034 11 C -0.178 4.178 12 C 0.323 3.677 13 O -0.402 6.402 14 O -0.331 6.331 15 C 0.274 3.726 16 O -0.386 6.386 17 C 0.002 3.998 18 C -0.179 4.179 19 C -0.334 4.334 20 S 0.467 5.533 21 C -0.985 4.985 22 S 2.801 3.199 23 N -0.929 5.929 24 O -0.907 6.907 25 O -0.915 6.915 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.263 0.737 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.243 0.757 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.043 -12.903 -4.378 14.213 hybrid contribution 1.661 -0.365 0.907 1.927 sum -2.382 -13.269 -3.470 13.920 Atomic orbital electron populations 1.69900 1.06142 1.28910 1.37487 1.25276 0.94997 0.99635 0.95181 0.86201 0.79200 0.82252 0.78522 1.20051 1.21087 1.19775 1.19137 0.94809 0.84271 1.48982 0.89300 1.43127 1.38591 1.06434 1.26094 1.21934 0.94372 0.88993 0.98137 1.22063 1.03361 0.91198 1.01195 1.23698 0.77287 0.85578 0.81147 1.90725 1.48067 1.70474 1.30957 1.84588 1.46048 1.38600 1.63897 1.17294 0.85676 0.86371 0.83276 1.90783 1.66788 1.31863 1.49215 1.20687 0.91249 0.95661 0.92196 1.22114 1.02324 0.90851 1.02613 1.25724 0.98367 1.03557 1.05729 1.82182 1.17102 0.92392 1.61618 1.35535 1.13783 1.24187 1.25022 1.01605 0.71596 0.72278 0.74389 1.53902 1.29853 1.90308 1.18884 1.93663 1.83558 1.69943 1.43563 1.93600 1.71317 1.70317 1.56279 0.91532 0.89864 0.89355 0.87555 0.86336 0.73672 0.82068 0.81342 0.75744 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.89 11.41 55.50 0.63 -23.26 16 2 C 0.06 1.77 4.38 -17.46 -0.08 1.69 16 3 Si 0.91 21.77 29.60 -169.99 -5.03 16.74 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.35 -9.17 9.25 -14.98 -0.14 -9.31 16 8 H 0.09 2.17 7.90 -52.49 -0.41 1.76 16 9 N -0.42 -10.44 2.56 -116.13 -0.30 -10.74 16 10 C 0.09 1.76 4.16 -4.04 -0.02 1.74 16 11 C -0.14 -2.12 5.12 -27.88 -0.14 -2.26 16 12 C 0.48 6.53 8.02 36.00 0.29 6.82 16 13 O -0.51 -8.30 16.74 -18.74 -0.31 -8.61 16 14 O -0.52 -5.42 13.42 -39.28 -0.53 -5.95 16 15 C 0.49 12.79 6.53 -12.66 -0.08 12.71 16 16 O -0.51 -15.32 11.95 -14.10 -0.17 -15.49 16 17 C 0.02 0.50 5.55 -104.63 -0.58 -0.08 16 18 C -0.15 -2.51 7.86 -39.01 -0.31 -2.82 16 19 C -0.20 -2.71 11.12 28.86 0.32 -2.39 16 20 S 0.20 2.77 22.67 -107.50 -2.44 0.33 16 21 C -0.78 -15.42 6.30 29.96 0.19 -15.23 16 22 S 2.72 55.78 5.12 -107.50 -0.55 55.23 16 23 N -1.26 -15.84 9.21 60.35 0.56 -15.28 16 24 O -0.92 -22.49 18.02 -57.17 -1.03 -23.52 16 25 O -0.93 -22.33 16.57 -65.32 -1.08 -23.42 16 26 H 0.27 8.08 8.32 -40.82 -0.34 7.74 16 27 H 0.08 1.66 8.06 -51.93 -0.42 1.24 16 28 H 0.09 1.67 4.14 -51.93 -0.22 1.46 16 29 H 0.11 1.52 7.01 -51.93 -0.36 1.15 16 30 H 0.12 1.76 8.14 -51.92 -0.42 1.33 16 31 H 0.41 2.37 9.10 45.56 0.41 2.78 16 32 H 0.16 2.48 3.26 -52.49 -0.17 2.31 16 33 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.42 4.03 8.96 -34.47 -0.31 3.72 16 35 H 0.42 4.11 8.96 -34.47 -0.31 3.80 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -40.41 328.80 -7.61 -48.02 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -1.77 Total: 10.10 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.55 Total: -9.12 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.89 Total: -49.28 kcal Atomic # 8 Polarization: -73.85 SS G_CDS: -3.12 Total: -76.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 58.55 SS G_CDS: -2.99 Total: 55.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -40.41 -7.61 -48.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.983 kcal (2) G-P(sol) polarization free energy of solvation -40.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds