Wall clock time and date at job start Wed Apr 1 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48507 * 109.46934 * 239.99568 * 3 2 1 5 5 H 1.48491 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47052 * 120.00050 * 3 2 1 7 7 C 1.39024 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00073 * 162.22711 * 7 2 1 9 9 N 1.36904 * 119.99909 * 342.22788 * 7 2 1 10 10 C 1.46491 * 119.99952 * 320.36971 * 9 7 2 11 11 C 1.52992 * 109.47558 * 270.00383 * 10 9 7 12 12 C 1.50700 * 109.47363 * 180.02562 * 11 10 9 13 13 O 1.20823 * 119.99910 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00191 * 179.97438 * 12 11 10 15 15 C 1.34774 * 119.99853 * 140.37502 * 9 7 2 16 16 O 1.21613 * 120.00094 * 174.58798 * 15 9 7 17 17 C 1.47545 * 120.00065 * 354.86433 * 15 9 7 18 18 N 1.30681 * 122.12543 * 353.74125 * 17 15 9 19 19 S 1.56140 * 109.81358 * 179.84769 * 18 17 15 20 20 C 1.71754 * 97.29795 * 0.35999 * 19 18 17 21 21 C 1.35047 * 105.46720 * 359.79457 * 20 19 18 22 22 Br 1.89096 * 124.16619 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00181 * 5.00486 * 1 2 3 24 24 H 1.09005 * 109.47352 * 30.00569 * 10 9 7 25 25 H 1.09001 * 109.47116 * 149.99827 * 10 9 7 26 26 H 1.08999 * 109.47261 * 300.00128 * 11 10 9 27 27 H 1.09002 * 109.47572 * 60.00104 * 11 10 9 28 28 H 0.96702 * 117.00348 * 180.02562 * 14 12 11 29 29 H 1.07997 * 127.26874 * 179.81721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2828 2.7464 -0.0006 6 1 3.1015 1.6964 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0503 -1.2264 -0.2850 9 7 1.3734 -2.3611 0.3630 10 6 0.4213 -2.3561 1.4762 11 6 1.1611 -2.6553 2.7815 12 6 0.1815 -2.6507 3.9267 13 8 -0.9885 -2.4312 3.7200 14 8 0.6086 -2.8916 5.1763 15 6 1.6238 -3.5049 -0.3045 16 8 1.1360 -4.5513 0.0778 17 6 2.4946 -3.4886 -1.4955 18 7 2.9474 -2.3760 -2.0101 19 16 3.8380 -2.6918 -3.2531 20 6 3.6765 -4.4011 -3.2086 21 6 2.8823 -4.6604 -2.1476 22 35 2.3591 -6.3967 -1.6118 23 1 -0.4850 0.8368 -0.0733 24 1 -0.0536 -1.3772 1.5439 25 1 -0.3397 -3.1180 1.3070 26 1 1.6359 -3.6341 2.7139 27 1 1.9220 -1.8934 2.9508 28 1 -0.0567 -2.8785 5.8779 29 1 4.1174 -5.1175 -3.8859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072029.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:24 Heat of formation + Delta-G solvation = -77.212201 kcal Electronic energy + Delta-G solvation = -20436.352609 eV Core-core repulsion = 16918.998952 eV Total energy + Delta-G solvation = -3517.353657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46608 -41.04881 -39.15478 -37.20571 -36.81024 -33.82402 -33.49584 -32.21606 -30.66392 -27.65405 -27.09375 -25.24255 -22.49322 -21.55955 -20.86091 -19.37298 -19.31448 -18.90847 -17.70590 -17.55550 -16.98258 -16.40832 -16.20563 -16.07859 -15.40292 -14.95293 -14.39603 -14.33561 -14.16445 -13.96183 -13.49874 -13.10922 -12.87614 -12.76783 -12.54914 -12.40305 -12.21166 -12.12460 -11.95767 -11.68796 -11.54689 -11.36446 -10.88761 -10.38412 -10.03278 -9.64838 -9.38107 -8.28481 -5.99206 -0.28259 0.12979 0.66367 0.92175 1.20281 1.33828 1.46475 1.49870 1.56993 2.01004 2.30722 2.46104 2.92799 3.14728 3.75435 4.00066 4.07582 4.18807 4.49025 4.55760 4.60270 4.74111 4.96101 5.34176 5.39143 5.57942 5.62472 5.93503 6.47165 7.01464 7.12105 7.47469 7.90460 8.73521 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005869 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.948708 B = 4769.569528 C = 7035.993345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.005 3.995 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.312 4.312 8 H 0.110 0.890 9 N -0.423 5.423 10 C 0.133 3.867 11 C -0.116 4.116 12 C 0.497 3.503 13 O -0.549 6.549 14 O -0.507 6.507 15 C 0.505 3.495 16 O -0.592 6.592 17 C 0.069 3.931 18 N -0.495 5.495 19 S 0.491 5.509 20 C -0.240 4.240 21 C -0.145 4.145 22 Br 0.010 6.990 23 H 0.272 0.728 24 H 0.097 0.903 25 H 0.042 0.958 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.427 0.573 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.971 -6.257 -3.254 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.443 4.443 8 H 0.127 0.873 9 N -0.140 5.140 10 C 0.009 3.991 11 C -0.154 4.154 12 C 0.340 3.660 13 O -0.440 6.440 14 O -0.320 6.320 15 C 0.291 3.709 16 O -0.478 6.478 17 C -0.105 4.105 18 N -0.327 5.327 19 S 0.646 5.354 20 C -0.390 4.390 21 C -0.240 4.240 22 Br 0.094 6.906 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.060 0.940 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.289 0.711 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.911 -5.224 -3.726 11.807 hybrid contribution -1.202 -0.461 0.983 1.620 sum 8.709 -5.685 -2.743 10.756 Atomic orbital electron populations 1.69926 1.07864 1.28971 1.46329 1.26254 0.95630 1.02904 0.95056 0.85217 0.78103 0.76804 0.79768 1.18733 1.21233 1.18566 1.19882 0.95914 0.83345 1.45154 0.87280 1.43555 1.37195 1.07747 1.25506 1.21038 0.90697 1.03489 0.83862 1.21580 0.97959 1.05753 0.90127 1.23310 0.87911 0.70762 0.84019 1.90705 1.20950 1.46801 1.85516 1.84503 1.46957 1.82914 1.17674 1.18061 0.84262 0.85120 0.83453 1.90710 1.56251 1.31318 1.69499 1.20769 1.02242 0.87170 1.00335 1.73308 1.16791 1.29606 1.13029 1.80337 1.37896 0.94300 1.22892 1.27443 1.02828 1.07562 1.01182 1.21952 1.06888 0.94033 1.01152 1.96606 1.91678 1.10284 1.92075 0.91829 0.88485 0.93989 0.87758 0.86567 0.71145 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.11 11.38 21.68 0.25 -47.86 15 2 C 0.01 0.26 5.03 84.95 0.43 0.69 15 3 Si 0.98 39.15 29.59 68.60 2.03 41.18 15 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 5 H -0.29 -11.54 7.11 99.48 0.71 -10.83 15 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 7 C -0.31 -15.55 7.54 84.09 0.63 -14.91 15 8 H 0.11 5.31 6.26 -2.91 -0.02 5.29 15 9 N -0.42 -21.36 2.50 -639.16 -1.60 -22.96 15 10 C 0.13 6.51 4.24 86.38 0.37 6.88 15 11 C -0.12 -4.53 6.13 29.85 0.18 -4.35 15 12 C 0.50 17.90 8.33 71.24 0.59 18.49 15 13 O -0.55 -23.58 16.74 21.97 0.37 -23.21 15 14 O -0.51 -13.36 13.42 -51.45 -0.69 -14.05 15 15 C 0.50 25.10 7.60 86.70 0.66 25.76 15 16 O -0.59 -30.42 14.03 -4.07 -0.06 -30.47 15 17 C 0.07 2.94 6.49 42.10 0.27 3.21 15 18 N -0.49 -19.87 7.79 -75.03 -0.58 -20.45 15 19 S 0.49 13.13 23.20 -56.49 -1.31 11.82 15 20 C -0.24 -6.08 11.30 67.08 0.76 -5.33 15 21 C -0.14 -5.10 6.33 21.86 0.14 -4.96 15 22 Br 0.01 0.36 31.47 -20.37 -0.64 -0.28 15 23 H 0.27 13.98 8.32 -92.71 -0.77 13.21 15 24 H 0.10 5.20 5.48 -2.38 -0.01 5.18 15 25 H 0.04 2.22 7.46 -2.39 -0.02 2.20 15 26 H 0.10 3.99 8.14 -2.39 -0.02 3.98 15 27 H 0.12 4.28 8.14 -2.39 -0.02 4.26 15 28 H 0.43 6.89 9.10 -74.06 -0.67 6.22 15 29 H 0.23 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -68.72 295.42 2.36 -66.36 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.56 Total: 14.45 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 4.03 Total: 25.48 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -1.94 Total: -91.28 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -0.38 Total: -67.74 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 13.13 SS G_CDS: -1.31 Total: 11.82 kcal Atomic # 35 Polarization: 0.36 SS G_CDS: -0.64 Total: -0.28 kcal Total: -68.72 2.36 -66.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072029.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.849 kcal (2) G-P(sol) polarization free energy of solvation -68.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds