Wall clock time and date at job start Wed Apr 1 2020 05:25:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31407 * 1
3 3 Si 1.86796 * 119.99873 * 2 1
4 4 H 1.48495 * 109.47072 * 269.99584 * 3 2 1
5 5 H 1.48494 * 109.47541 * 30.00002 * 3 2 1
6 6 H 1.48500 * 109.46928 * 150.00299 * 3 2 1
7 7 C 1.39004 * 119.99854 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00004 * 181.69793 * 7 2 1
9 9 N 1.36891 * 119.99871 * 1.69789 * 7 2 1
10 10 C 1.46497 * 119.99889 * 46.86939 * 9 7 2
11 11 C 1.52999 * 109.47208 * 86.74116 * 10 9 7
12 12 C 1.50694 * 109.47154 * 179.97438 * 11 10 9
13 13 O 1.20823 * 120.00336 * 359.97438 * 12 11 10
14 14 O 1.34234 * 119.99903 * 179.97438 * 12 11 10
15 15 C 1.34776 * 119.99968 * 226.86401 * 9 7 2
16 16 O 1.21742 * 120.00002 * 185.69266 * 15 9 7
17 17 C 1.46463 * 120.00050 * 5.69855 * 15 9 7
18 18 C 1.36762 * 125.46269 * 182.23587 * 17 15 9
19 19 C 1.37442 * 113.27877 * 179.97438 * 18 17 15
20 20 C 1.33855 * 115.10768 * 0.02562 * 19 18 17
21 21 S 1.76199 * 124.51488 * 179.97438 * 20 19 18
22 22 N 1.65608 * 107.21693 * 90.00465 * 21 20 19
23 23 O 1.42104 * 106.40502 * 203.54148 * 21 20 19
24 24 O 1.42098 * 106.40630 * 336.46778 * 21 20 19
25 25 S 1.70615 * 110.96953 * 359.72736 * 20 19 18
26 26 H 0.96993 * 119.99704 * 0.02562 * 1 2 3
27 27 H 1.08997 * 109.46909 * 206.73750 * 10 9 7
28 28 H 1.08992 * 109.47360 * 326.73629 * 10 9 7
29 29 H 1.09007 * 109.47067 * 299.99510 * 11 10 9
30 30 H 1.09001 * 109.47550 * 59.99480 * 11 10 9
31 31 H 0.96697 * 117.00325 * 180.02562 * 14 12 11
32 32 H 1.07995 * 123.36460 * 359.96778 * 18 17 15
33 33 H 1.07998 * 122.44826 * 179.97438 * 19 18 17
34 34 H 0.97004 * 119.99583 * 359.97438 * 22 21 20
35 35 H 0.96992 * 119.99755 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6177 0.0000
4 1 2.4956 2.0463 -1.4000
5 1 1.4456 2.6527 0.7000
6 1 3.5456 1.4401 0.7000
7 6 2.0091 -1.2038 0.0005
8 1 3.0887 -1.2040 0.0283
9 7 1.3250 -2.3891 -0.0341
10 6 0.2318 -2.5761 -0.9911
11 6 0.7984 -3.0768 -2.3212
12 6 -0.3263 -3.2699 -3.3055
13 8 -1.4643 -3.0319 -2.9768
14 8 -0.0637 -3.7062 -4.5475
15 6 1.6574 -3.3839 0.8123
16 8 1.1207 -4.4721 0.7132
17 6 2.6641 -3.1558 1.8513
18 6 3.1159 -4.0939 2.7380
19 6 4.0642 -3.6083 3.6063
20 6 4.3796 -2.3181 3.4395
21 16 5.5603 -1.4450 4.4132
22 7 7.0299 -1.6122 3.6683
23 8 5.2179 -0.0689 4.3206
24 8 5.6551 -2.1409 5.6485
25 16 3.4909 -1.6337 2.1539
26 1 -0.4849 0.8400 -0.0004
27 1 -0.4738 -3.3082 -0.5982
28 1 -0.2798 -1.6267 -1.1485
29 1 1.5039 -2.3447 -2.7142
30 1 1.3100 -4.0264 -2.1638
31 1 -0.8175 -3.8143 -5.1434
32 1 2.7628 -5.1143 2.7544
33 1 4.5209 -4.2225 4.3682
34 1 7.1019 -2.1237 2.8472
35 1 7.8185 -1.1995 4.0534
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601072397.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:53
Heat of formation + Delta-G solvation = -171.448397 kcal
Electronic energy + Delta-G solvation = -26122.711373 eV
Core-core repulsion = 21953.575815 eV
Total energy + Delta-G solvation = -4169.135558 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.037 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-39.95525 -38.97906 -37.19947 -36.76123 -35.88887 -35.62954 -35.22240 -33.13756
-32.41309 -31.19097 -29.25900 -25.78423 -25.35969 -23.49543 -21.09073 -20.07001
-20.00809 -19.05452 -18.72551 -17.82257 -17.31988 -16.80407 -16.64991 -16.24958
-15.82500 -15.56009 -15.41776 -14.99713 -14.63744 -14.30946 -14.18594 -13.55885
-12.99700 -12.85241 -12.67427 -12.51953 -12.08199 -12.05874 -11.98007 -11.88960
-11.79432 -11.50287 -11.41518 -11.30181 -11.23966 -11.08162 -10.63821 -10.45376
-10.32350 -10.26057 -10.15830 -9.42198 -9.04049 -8.70786 -8.05658 -7.90848
-6.84480 -4.80114 0.53174 0.80000 2.12828 2.51350 2.56376 2.65958
2.91818 3.00675 3.02557 3.30547 3.38200 3.71279 3.80173 3.98430
4.39735 4.54574 5.02583 5.44318 5.58153 5.64803 5.76087 5.82232
5.89646 5.99785 6.16854 6.23249 6.47501 6.67781 6.73310 6.76875
6.77809 7.02907 7.18727 7.44349 7.80380 8.19959 8.48134 8.92840
9.37694 10.07696
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.015192 B = 0.003845 C = 0.003294
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1842.673573 B = 7280.482598 C = 8498.435352
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.825 5.825
2 C 0.066 3.934
3 Si 0.904 3.096
4 H -0.266 1.266
5 H -0.270 1.270
6 H -0.248 1.248
7 C -0.351 4.351
8 H 0.104 0.896
9 N -0.427 5.427
10 C 0.120 3.880
11 C -0.124 4.124
12 C 0.484 3.516
13 O -0.514 6.514
14 O -0.524 6.524
15 C 0.531 3.469
16 O -0.583 6.583
17 C -0.173 4.173
18 C -0.134 4.134
19 C -0.008 4.008
20 C -0.911 4.911
21 S 2.731 3.269
22 N -1.252 6.252
23 O -0.967 6.967
24 O -0.972 6.972
25 S 0.402 5.598
26 H 0.285 0.715
27 H 0.070 0.930
28 H 0.128 0.872
29 H 0.107 0.893
30 H 0.097 0.903
31 H 0.402 0.598
32 H 0.148 0.852
33 H 0.138 0.862
34 H 0.417 0.583
35 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.473 -1.192 -2.114 9.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.456 5.456
2 C -0.149 4.149
3 Si 0.727 3.273
4 H -0.191 1.191
5 H -0.194 1.194
6 H -0.171 1.171
7 C -0.487 4.487
8 H 0.120 0.880
9 N -0.145 5.145
10 C -0.003 4.003
11 C -0.163 4.163
12 C 0.326 3.674
13 O -0.401 6.401
14 O -0.336 6.336
15 C 0.320 3.680
16 O -0.469 6.469
17 C -0.298 4.298
18 C -0.167 4.167
19 C -0.045 4.045
20 C -1.116 5.116
21 S 2.819 3.181
22 N -0.926 5.926
23 O -0.956 6.956
24 O -0.961 6.961
25 S 0.681 5.319
26 H 0.096 0.904
27 H 0.088 0.912
28 H 0.146 0.854
29 H 0.125 0.875
30 H 0.115 0.885
31 H 0.260 0.740
32 H 0.165 0.835
33 H 0.156 0.844
34 H 0.244 0.756
35 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 8.692 0.508 -1.477 8.831
hybrid contribution 0.001 -1.271 -0.470 1.355
sum 8.693 -0.763 -1.947 8.941
Atomic orbital electron populations
1.69652 1.06475 1.29521 1.39966 1.25736 0.95539 1.00483 0.93101
0.86214 0.80955 0.80462 0.79718 1.19070 1.19437 1.17109 1.19459
0.91372 0.82998 1.54839 0.87980 1.43289 1.30662 1.12285 1.28249
1.21481 0.89311 1.04742 0.84811 1.21808 0.95705 1.04510 0.94262
1.23695 0.90718 0.72030 0.80947 1.90710 1.24098 1.47184 1.78135
1.84582 1.44509 1.79617 1.24875 1.17435 0.83449 0.85733 0.81417
1.90713 1.56994 1.25164 1.73997 1.25397 1.02823 0.99050 1.02541
1.20683 0.99258 1.00774 0.95976 1.19433 0.95703 0.92017 0.97385
1.35632 1.30557 1.14192 1.31194 1.00480 0.72049 0.73142 0.72436
1.53108 1.27087 1.70944 1.41455 1.93599 1.83172 1.32624 1.86216
1.93553 1.86137 1.74986 1.41436 1.84658 1.25750 1.06921 1.14532
0.90380 0.91181 0.85439 0.87497 0.88453 0.73998 0.83470 0.84419
0.75611 0.75449
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 42.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -19.15 11.01 55.50 0.61 -18.54 16
2 C 0.07 1.43 5.33 -17.45 -0.09 1.34 16
3 Si 0.90 16.90 29.55 -169.99 -5.02 11.87 16
4 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16
5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16
6 H -0.25 -4.47 7.11 56.52 0.40 -4.07 16
7 C -0.35 -7.55 6.63 -15.01 -0.10 -7.65 16
8 H 0.10 2.04 5.74 -37.46 -0.21 1.83 16
9 N -0.43 -9.56 2.49 -116.38 -0.29 -9.85 16
10 C 0.12 2.60 4.31 -4.04 -0.02 2.58 16
11 C -0.12 -2.20 6.12 -27.89 -0.17 -2.38 16
12 C 0.48 8.17 8.33 36.00 0.30 8.47 16
13 O -0.51 -10.23 16.74 -18.75 -0.31 -10.54 16
14 O -0.52 -6.84 13.42 -39.27 -0.53 -7.37 16
15 C 0.53 12.14 7.59 -12.95 -0.10 12.04 16
16 O -0.58 -14.46 16.43 5.15 0.08 -14.38 16
17 C -0.17 -3.52 6.30 -36.81 -0.23 -3.75 16
18 C -0.13 -2.41 10.02 -40.41 -0.40 -2.81 16
19 C -0.01 -0.12 9.77 -41.41 -0.40 -0.53 16
20 C -0.91 -14.80 6.32 29.19 0.18 -14.62 16
21 S 2.73 39.62 6.41 -107.50 -0.69 38.93 16
22 N -1.25 -11.95 9.55 60.35 0.58 -11.38 16
23 O -0.97 -17.03 17.83 -57.17 -1.02 -18.05 16
24 O -0.97 -16.32 17.74 -57.17 -1.01 -17.34 16
25 S 0.40 7.43 18.23 -107.50 -1.96 5.47 16
26 H 0.29 6.22 8.31 -40.82 -0.34 5.89 16
27 H 0.07 1.64 7.36 -51.93 -0.38 1.26 16
28 H 0.13 2.98 5.39 -51.93 -0.28 2.70 16
29 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16
30 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16
31 H 0.40 3.35 9.10 45.56 0.41 3.76 16
32 H 0.15 2.49 8.06 -52.49 -0.42 2.07 16
33 H 0.14 1.85 8.02 -52.49 -0.42 1.43 16
34 H 0.42 3.12 8.92 -34.47 -0.31 2.81 16
35 H 0.42 2.98 8.96 -34.47 -0.31 2.67 16
LS Contribution 337.58 15.07 5.09 5.09
Total: -1.00 -32.14 337.58 -7.42 -39.56
By element:
Atomic # 1 Polarization: 15.72 SS G_CDS: -1.90 Total: 13.81 kcal
Atomic # 6 Polarization: -6.27 SS G_CDS: -1.04 Total: -7.30 kcal
Atomic # 7 Polarization: -40.66 SS G_CDS: 0.90 Total: -39.77 kcal
Atomic # 8 Polarization: -64.88 SS G_CDS: -2.79 Total: -67.67 kcal
Atomic # 14 Polarization: 16.90 SS G_CDS: -5.02 Total: 11.87 kcal
Atomic # 16 Polarization: 47.05 SS G_CDS: -2.65 Total: 44.40 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -32.14 -7.42 -39.56 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601072397.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -131.887 kcal
(2) G-P(sol) polarization free energy of solvation -32.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) -171.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds