Wall clock time and date at job start Wed Apr 1 2020 05:25:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31407 * 1
3 3 Si 1.86796 * 119.99873 * 2 1
4 4 H 1.48495 * 109.47072 * 269.99584 * 3 2 1
5 5 H 1.48494 * 109.47541 * 30.00002 * 3 2 1
6 6 H 1.48500 * 109.46928 * 150.00299 * 3 2 1
7 7 C 1.39004 * 119.99854 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00004 * 181.69793 * 7 2 1
9 9 N 1.36891 * 119.99871 * 1.69789 * 7 2 1
10 10 C 1.46497 * 119.99889 * 46.86939 * 9 7 2
11 11 C 1.52999 * 109.47208 * 86.74116 * 10 9 7
12 12 C 1.50694 * 109.47154 * 179.97438 * 11 10 9
13 13 O 1.20823 * 120.00336 * 359.97438 * 12 11 10
14 14 O 1.34234 * 119.99903 * 179.97438 * 12 11 10
15 15 C 1.34776 * 119.99968 * 226.86401 * 9 7 2
16 16 O 1.21742 * 120.00002 * 185.69266 * 15 9 7
17 17 C 1.46463 * 120.00050 * 5.69855 * 15 9 7
18 18 C 1.36762 * 125.46269 * 182.23587 * 17 15 9
19 19 C 1.37442 * 113.27877 * 179.97438 * 18 17 15
20 20 C 1.33855 * 115.10768 * 0.02562 * 19 18 17
21 21 S 1.76199 * 124.51488 * 179.97438 * 20 19 18
22 22 N 1.65608 * 107.21693 * 90.00465 * 21 20 19
23 23 O 1.42104 * 106.40502 * 203.54148 * 21 20 19
24 24 O 1.42098 * 106.40630 * 336.46778 * 21 20 19
25 25 S 1.70615 * 110.96953 * 359.72736 * 20 19 18
26 26 H 0.96993 * 119.99704 * 0.02562 * 1 2 3
27 27 H 1.08997 * 109.46909 * 206.73750 * 10 9 7
28 28 H 1.08992 * 109.47360 * 326.73629 * 10 9 7
29 29 H 1.09007 * 109.47067 * 299.99510 * 11 10 9
30 30 H 1.09001 * 109.47550 * 59.99480 * 11 10 9
31 31 H 0.96697 * 117.00325 * 180.02562 * 14 12 11
32 32 H 1.07995 * 123.36460 * 359.96778 * 18 17 15
33 33 H 1.07998 * 122.44826 * 179.97438 * 19 18 17
34 34 H 0.97004 * 119.99583 * 359.97438 * 22 21 20
35 35 H 0.96992 * 119.99755 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6177 0.0000
4 1 2.4956 2.0463 -1.4000
5 1 1.4456 2.6527 0.7000
6 1 3.5456 1.4401 0.7000
7 6 2.0091 -1.2038 0.0005
8 1 3.0887 -1.2040 0.0283
9 7 1.3250 -2.3891 -0.0341
10 6 0.2318 -2.5761 -0.9911
11 6 0.7984 -3.0768 -2.3212
12 6 -0.3263 -3.2699 -3.3055
13 8 -1.4643 -3.0319 -2.9768
14 8 -0.0637 -3.7062 -4.5475
15 6 1.6574 -3.3839 0.8123
16 8 1.1207 -4.4721 0.7132
17 6 2.6641 -3.1558 1.8513
18 6 3.1159 -4.0939 2.7380
19 6 4.0642 -3.6083 3.6063
20 6 4.3796 -2.3181 3.4395
21 16 5.5603 -1.4450 4.4132
22 7 7.0299 -1.6122 3.6683
23 8 5.2179 -0.0689 4.3206
24 8 5.6551 -2.1409 5.6485
25 16 3.4909 -1.6337 2.1539
26 1 -0.4849 0.8400 -0.0004
27 1 -0.4738 -3.3082 -0.5982
28 1 -0.2798 -1.6267 -1.1485
29 1 1.5039 -2.3447 -2.7142
30 1 1.3100 -4.0264 -2.1638
31 1 -0.8175 -3.8143 -5.1434
32 1 2.7628 -5.1143 2.7544
33 1 4.5209 -4.2225 4.3682
34 1 7.1019 -2.1237 2.8472
35 1 7.8185 -1.1995 4.0534
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001601072397.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:53
Heat of formation + Delta-G solvation = -198.254861 kcal
Electronic energy + Delta-G solvation = -26123.873789 eV
Core-core repulsion = 21953.575815 eV
Total energy + Delta-G solvation = -4170.297974 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.037 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.36550 -40.61175 -38.60675 -38.08093 -37.21674 -36.91109 -36.88439 -34.06216
-34.02837 -32.78720 -30.71308 -27.44633 -26.86023 -24.98660 -22.51105 -21.64506
-21.31355 -20.50939 -20.00402 -19.15575 -18.39245 -18.27120 -18.04409 -17.71341
-17.14264 -16.93625 -16.76946 -16.38135 -16.11555 -15.88466 -15.79937 -15.02053
-14.41103 -14.34984 -14.17503 -13.92987 -13.66226 -13.45627 -13.23225 -13.18818
-13.10267 -13.05531 -12.93561 -12.86017 -12.55534 -12.46887 -12.12826 -11.96701
-11.71410 -11.60293 -11.32956 -11.04970 -10.77948 -10.20382 -9.66874 -9.42739
-8.49418 -6.50691 -0.79971 -0.51017 0.66657 1.07587 1.19899 1.23476
1.44466 1.49239 1.57307 1.97622 2.17901 2.24018 2.33069 2.67470
2.82032 2.91716 3.81450 3.97358 4.03467 4.21698 4.32655 4.48026
4.48655 4.72061 4.84258 4.90680 5.09748 5.16604 5.31063 5.39232
5.42888 5.59949 5.76556 6.12749 6.39150 6.80975 7.00587 7.22343
7.67672 8.44936
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.015192 B = 0.003845 C = 0.003294
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1842.673573 B = 7280.482598 C = 8498.435352
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.864 5.864
2 C 0.034 3.966
3 Si 0.947 3.053
4 H -0.254 1.254
5 H -0.278 1.278
6 H -0.235 1.235
7 C -0.361 4.361
8 H 0.118 0.882
9 N -0.432 5.432
10 C 0.123 3.877
11 C -0.116 4.116
12 C 0.495 3.505
13 O -0.550 6.550
14 O -0.507 6.507
15 C 0.519 3.481
16 O -0.616 6.616
17 C -0.209 4.209
18 C -0.123 4.123
19 C -0.002 4.002
20 C -0.895 4.895
21 S 2.757 3.243
22 N -1.231 6.231
23 O -0.996 6.996
24 O -0.989 6.989
25 S 0.392 5.608
26 H 0.285 0.715
27 H 0.040 0.960
28 H 0.111 0.889
29 H 0.121 0.879
30 H 0.102 0.898
31 H 0.427 0.573
32 H 0.155 0.845
33 H 0.171 0.829
34 H 0.430 0.570
35 H 0.431 0.569
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.287 -1.119 -1.942 12.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.496 5.496
2 C -0.176 4.176
3 Si 0.767 3.233
4 H -0.178 1.178
5 H -0.203 1.203
6 H -0.157 1.157
7 C -0.495 4.495
8 H 0.135 0.865
9 N -0.149 5.149
10 C -0.001 4.001
11 C -0.154 4.154
12 C 0.339 3.661
13 O -0.440 6.440
14 O -0.321 6.321
15 C 0.309 3.691
16 O -0.505 6.505
17 C -0.333 4.333
18 C -0.157 4.157
19 C -0.039 4.039
20 C -1.098 5.098
21 S 2.842 3.158
22 N -0.912 5.912
23 O -0.985 6.985
24 O -0.979 6.979
25 S 0.670 5.330
26 H 0.095 0.905
27 H 0.059 0.941
28 H 0.128 0.872
29 H 0.140 0.860
30 H 0.120 0.880
31 H 0.289 0.711
32 H 0.173 0.827
33 H 0.189 0.811
34 H 0.260 0.740
35 H 0.265 0.735
Dipole moment (debyes) X Y Z Total
from point charges 11.508 0.583 -1.387 11.606
hybrid contribution -0.751 -1.395 -0.443 1.645
sum 10.757 -0.812 -1.830 10.941
Atomic orbital electron populations
1.69763 1.07894 1.30032 1.41934 1.26400 0.95855 1.02877 0.92480
0.85559 0.80306 0.77082 0.80308 1.17826 1.20308 1.15716 1.19784
0.92084 0.82654 1.54989 0.86496 1.43451 1.30472 1.12641 1.28339
1.21286 0.89176 1.03026 0.86612 1.21587 0.96084 1.04906 0.92844
1.23344 0.89575 0.71383 0.81803 1.90708 1.25296 1.48977 1.79066
1.84500 1.45671 1.78441 1.23503 1.17831 0.83972 0.85420 0.81859
1.90666 1.58494 1.26275 1.75037 1.25282 1.04062 1.00664 1.03312
1.20952 0.98692 1.00810 0.95242 1.19709 0.94729 0.92148 0.97290
1.35814 1.30340 1.14255 1.29423 0.99678 0.72320 0.71995 0.71766
1.52594 1.25758 1.71060 1.41788 1.93574 1.84061 1.34319 1.86529
1.93539 1.86538 1.75144 1.42659 1.84483 1.26153 1.06477 1.15889
0.90474 0.94142 0.87154 0.86049 0.88007 0.71143 0.82743 0.81139
0.73963 0.73548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -41.47 11.01 21.67 0.24 -41.24 16
2 C 0.03 1.50 5.33 84.94 0.45 1.95 16
3 Si 0.95 33.98 29.55 68.60 2.03 36.01 16
4 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16
5 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16
6 H -0.23 -7.83 7.11 99.48 0.71 -7.12 16
7 C -0.36 -15.67 6.63 84.09 0.56 -15.12 16
8 H 0.12 4.62 5.74 -12.47 -0.07 4.55 16
9 N -0.43 -19.91 2.49 -640.30 -1.59 -21.51 16
10 C 0.12 5.56 4.31 86.38 0.37 5.93 16
11 C -0.12 -4.16 6.12 29.85 0.18 -3.98 16
12 C 0.50 16.67 8.33 71.23 0.59 17.26 16
13 O -0.55 -22.38 16.74 21.97 0.37 -22.01 16
14 O -0.51 -12.34 13.42 -51.45 -0.69 -13.03 16
15 C 0.52 24.38 7.59 86.39 0.66 25.03 16
16 O -0.62 -31.67 16.43 -4.48 -0.07 -31.74 16
17 C -0.21 -8.44 6.30 24.07 0.15 -8.29 16
18 C -0.12 -4.24 10.02 21.74 0.22 -4.02 16
19 C 0.00 -0.06 9.77 21.08 0.21 0.14 16
20 C -0.90 -26.78 6.32 66.82 0.42 -26.36 16
21 S 2.76 71.70 6.41 -56.49 -0.36 71.34 16
22 N -1.23 -18.85 9.55 37.02 0.35 -18.50 16
23 O -1.00 -32.68 17.83 -128.00 -2.28 -34.96 16
24 O -0.99 -30.08 17.74 -128.00 -2.27 -32.35 16
25 S 0.39 13.99 18.23 -56.49 -1.03 12.96 16
26 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16
27 H 0.04 2.02 7.36 -2.39 -0.02 2.00 16
28 H 0.11 5.43 5.39 -2.39 -0.01 5.42 16
29 H 0.12 3.99 8.14 -2.38 -0.02 3.98 16
30 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16
31 H 0.43 6.15 9.10 -74.06 -0.67 5.47 16
32 H 0.15 5.05 8.06 -2.91 -0.02 5.02 16
33 H 0.17 3.87 8.02 -2.91 -0.02 3.85 16
34 H 0.43 4.71 8.92 -96.74 -0.86 3.84 16
35 H 0.43 4.48 8.96 -96.75 -0.87 3.62 16
Total: -1.00 -70.86 337.58 -2.74 -73.61
By element:
Atomic # 1 Polarization: 30.11 SS G_CDS: -1.24 Total: 28.87 kcal
Atomic # 6 Polarization: -11.25 SS G_CDS: 3.81 Total: -7.44 kcal
Atomic # 7 Polarization: -80.24 SS G_CDS: -1.00 Total: -81.24 kcal
Atomic # 8 Polarization: -129.14 SS G_CDS: -4.95 Total: -134.09 kcal
Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal
Atomic # 16 Polarization: 85.69 SS G_CDS: -1.39 Total: 84.29 kcal
Total: -70.86 -2.74 -73.61 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601072397.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -124.648 kcal
(2) G-P(sol) polarization free energy of solvation -70.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -198.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds