Wall clock time and date at job start Wed Apr 1 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31339 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47323 * 240.00164 * 3 2 1 5 5 H 1.48493 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46963 * 120.00461 * 3 2 1 7 7 C 1.39094 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 197.33761 * 7 2 1 9 9 N 1.36765 * 119.99873 * 17.33496 * 7 2 1 10 10 C 1.46503 * 120.00196 * 39.96860 * 9 7 2 11 11 C 1.53006 * 109.47033 * 97.32506 * 10 9 7 12 12 C 1.50691 * 109.46995 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00515 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.34782 * 120.00161 * 220.24567 * 9 7 2 16 16 O 1.21682 * 120.00425 * 184.95500 * 15 9 7 17 17 C 1.47055 * 119.99500 * 4.95076 * 15 9 7 18 18 N 1.30677 * 125.53917 * 6.78301 * 17 15 9 19 19 C 1.30751 * 115.87672 * 179.81657 * 18 17 15 20 20 Br 1.89091 * 122.11721 * 180.24679 * 19 18 17 21 21 C 1.34316 * 115.76280 * 0.48600 * 19 18 17 22 22 S 1.71065 * 109.11382 * 359.74042 * 21 19 18 23 23 H 0.96999 * 119.99888 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47228 * 217.32471 * 10 9 7 25 25 H 1.08994 * 109.46811 * 337.32700 * 10 9 7 26 26 H 1.08997 * 109.46623 * 299.99876 * 11 10 9 27 27 H 1.08999 * 109.46904 * 59.99999 * 11 10 9 28 28 H 0.96700 * 117.00317 * 179.97438 * 14 12 11 29 29 H 1.08000 * 125.44523 * 179.76523 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2825 2.7464 0.0006 6 1 3.1012 1.6963 1.2125 7 6 2.0088 -1.2046 -0.0005 8 1 3.0521 -1.2260 0.2782 9 7 1.3716 -2.3619 -0.3540 10 6 0.4176 -2.3628 -1.4658 11 6 1.1165 -2.8490 -2.7371 12 6 0.1354 -2.8492 -3.8809 13 8 -1.0056 -2.4963 -3.6983 14 8 0.5293 -3.2406 -5.1030 15 6 1.6170 -3.5006 0.3242 16 8 1.1203 -4.5481 -0.0455 17 6 2.4852 -3.4769 1.5109 18 7 2.9715 -2.4031 2.0749 19 6 3.7216 -2.6013 3.1274 20 35 4.5095 -1.1729 4.0837 21 6 3.9012 -3.8839 3.4832 22 16 3.0448 -4.8914 2.3979 23 1 -0.4850 0.8400 0.0004 24 1 -0.4134 -3.0279 -1.2311 25 1 0.0410 -1.3520 -1.6221 26 1 1.9475 -2.1838 -2.9718 27 1 1.4931 -3.8598 -2.5807 28 1 -0.1356 -3.2241 -5.8049 29 1 4.4916 -4.2247 4.3209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072557.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:32 Heat of formation + Delta-G solvation = -63.596132 kcal Electronic energy + Delta-G solvation = -20212.078691 eV Core-core repulsion = 16695.315471 eV Total energy + Delta-G solvation = -3516.763220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94037 -39.45895 -38.19130 -35.86779 -35.12324 -32.16980 -31.70918 -30.64584 -29.05645 -26.01560 -25.35259 -23.69156 -21.05341 -20.29490 -19.12797 -18.33655 -17.73613 -16.91657 -16.21771 -15.89466 -15.51606 -14.87232 -14.64051 -14.50341 -14.19261 -13.51028 -13.15294 -12.92059 -12.71703 -12.51102 -11.87407 -11.39942 -11.35519 -11.23238 -11.14847 -10.93956 -10.55959 -10.48991 -10.27941 -10.18113 -10.08529 -9.39765 -9.33264 -9.24529 -8.78861 -8.33061 -7.77107 -6.57935 -4.17407 0.68562 1.33336 1.69786 2.46336 2.60196 2.73532 3.14420 3.17828 3.19918 3.36496 3.97030 4.08047 4.46954 4.82643 5.13193 5.39535 5.48149 5.58814 5.70996 5.91318 6.20097 6.24618 6.66434 6.77073 7.12036 7.37440 7.57892 7.92385 8.22809 8.25354 8.85164 9.12306 9.56674 10.43494 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.004658 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.138094 B = 6009.589821 C = 7654.432643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.049 3.951 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.304 4.304 8 H 0.113 0.887 9 N -0.388 5.388 10 C 0.131 3.869 11 C -0.128 4.128 12 C 0.485 3.515 13 O -0.514 6.514 14 O -0.523 6.523 15 C 0.512 3.488 16 O -0.599 6.599 17 C 0.058 3.942 18 N -0.387 5.387 19 C 0.063 3.937 20 Br -0.005 7.005 21 C -0.280 4.280 22 S 0.197 5.803 23 H 0.277 0.723 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.402 0.598 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -3.232 2.632 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.161 4.161 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.435 4.435 8 H 0.131 0.869 9 N -0.103 5.103 10 C 0.007 3.993 11 C -0.167 4.167 12 C 0.327 3.673 13 O -0.401 6.401 14 O -0.335 6.335 15 C 0.300 3.700 16 O -0.486 6.486 17 C -0.219 4.219 18 N -0.103 5.103 19 C -0.154 4.154 20 Br 0.077 6.923 21 C -0.425 4.425 22 S 0.453 5.547 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.260 0.740 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.608 -3.584 2.824 8.872 hybrid contribution 0.197 1.431 0.091 1.447 sum 7.805 -2.153 2.915 8.605 Atomic orbital electron populations 1.69871 1.06462 1.28904 1.42417 1.25544 0.95150 1.00436 0.94949 0.86113 0.79557 0.80280 0.79840 1.19468 1.20736 1.18621 1.19943 0.95810 0.83050 1.44691 0.86944 1.43411 1.35529 1.07621 1.23718 1.21298 0.90562 1.05043 0.82400 1.21823 0.98079 1.05493 0.91290 1.23644 0.88459 0.72216 0.82972 1.90716 1.21279 1.44140 1.83983 1.84580 1.47864 1.80520 1.20539 1.17021 0.84663 0.85867 0.82444 1.90717 1.56727 1.31224 1.69979 1.27979 1.02827 0.89021 1.02056 1.67280 1.07981 1.29047 1.06038 1.21782 1.04003 0.91574 0.98048 1.96658 1.79390 1.45766 1.70452 1.26395 1.10708 0.96574 1.08793 1.83853 1.39467 1.11799 1.19545 0.91259 0.91077 0.86449 0.87561 0.87719 0.73987 0.80304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.50 11.50 55.50 0.64 -20.86 15 2 C 0.05 1.18 4.96 -17.44 -0.09 1.10 15 3 Si 0.92 19.14 29.59 -169.99 -5.03 14.11 15 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 7 C -0.30 -7.38 7.64 -15.03 -0.11 -7.49 15 8 H 0.11 2.74 6.41 -52.49 -0.34 2.40 15 9 N -0.39 -9.28 2.52 -116.17 -0.29 -9.58 15 10 C 0.13 2.95 4.08 -4.04 -0.02 2.93 15 11 C -0.13 -2.37 6.06 -27.88 -0.17 -2.53 15 12 C 0.48 8.39 8.33 36.00 0.30 8.69 15 13 O -0.51 -10.42 16.74 -18.75 -0.31 -10.73 15 14 O -0.52 -7.02 13.42 -39.26 -0.53 -7.55 15 15 C 0.51 12.17 7.55 -12.68 -0.10 12.07 15 16 O -0.60 -14.79 16.41 5.20 0.09 -14.71 15 17 C 0.06 1.24 7.17 -14.47 -0.10 1.13 15 18 N -0.39 -8.29 7.54 -9.94 -0.07 -8.37 15 19 C 0.06 1.15 7.10 -19.40 -0.14 1.01 15 20 Br 0.00 -0.08 33.97 -68.01 -2.31 -2.39 15 21 C -0.28 -4.26 10.89 29.35 0.32 -3.94 15 22 S 0.20 3.24 23.03 -107.50 -2.48 0.76 15 23 H 0.28 6.72 8.31 -40.82 -0.34 6.38 15 24 H 0.07 1.71 7.68 -51.93 -0.40 1.31 15 25 H 0.12 2.85 5.63 -51.93 -0.29 2.56 15 26 H 0.11 1.83 8.14 -51.93 -0.42 1.41 15 27 H 0.10 1.91 7.86 -51.93 -0.41 1.50 15 28 H 0.40 3.47 9.10 45.56 0.41 3.88 15 29 H 0.18 2.09 8.06 -52.49 -0.42 1.66 15 LS Contribution 301.02 15.07 4.54 4.54 Total: -1.00 -29.45 301.02 -6.87 -36.32 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -1.00 Total: 5.47 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -0.10 Total: 12.97 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.27 Total: -38.80 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.76 Total: -32.98 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.48 Total: 0.76 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.31 Total: -2.39 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.45 -6.87 -36.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072557.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.272 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds