Wall clock time and date at job start Wed Apr 1 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31339 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47323 * 240.00164 * 3 2 1 5 5 H 1.48493 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46963 * 120.00461 * 3 2 1 7 7 C 1.39094 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 197.33761 * 7 2 1 9 9 N 1.36765 * 119.99873 * 17.33496 * 7 2 1 10 10 C 1.46503 * 120.00196 * 39.96860 * 9 7 2 11 11 C 1.53006 * 109.47033 * 97.32506 * 10 9 7 12 12 C 1.50691 * 109.46995 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00515 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.34782 * 120.00161 * 220.24567 * 9 7 2 16 16 O 1.21682 * 120.00425 * 184.95500 * 15 9 7 17 17 C 1.47055 * 119.99500 * 4.95076 * 15 9 7 18 18 N 1.30677 * 125.53917 * 6.78301 * 17 15 9 19 19 C 1.30751 * 115.87672 * 179.81657 * 18 17 15 20 20 Br 1.89091 * 122.11721 * 180.24679 * 19 18 17 21 21 C 1.34316 * 115.76280 * 0.48600 * 19 18 17 22 22 S 1.71065 * 109.11382 * 359.74042 * 21 19 18 23 23 H 0.96999 * 119.99888 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47228 * 217.32471 * 10 9 7 25 25 H 1.08994 * 109.46811 * 337.32700 * 10 9 7 26 26 H 1.08997 * 109.46623 * 299.99876 * 11 10 9 27 27 H 1.08999 * 109.46904 * 59.99999 * 11 10 9 28 28 H 0.96700 * 117.00317 * 179.97438 * 14 12 11 29 29 H 1.08000 * 125.44523 * 179.76523 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2825 2.7464 0.0006 6 1 3.1012 1.6963 1.2125 7 6 2.0088 -1.2046 -0.0005 8 1 3.0521 -1.2260 0.2782 9 7 1.3716 -2.3619 -0.3540 10 6 0.4176 -2.3628 -1.4658 11 6 1.1165 -2.8490 -2.7371 12 6 0.1354 -2.8492 -3.8809 13 8 -1.0056 -2.4963 -3.6983 14 8 0.5293 -3.2406 -5.1030 15 6 1.6170 -3.5006 0.3242 16 8 1.1203 -4.5481 -0.0455 17 6 2.4852 -3.4769 1.5109 18 7 2.9715 -2.4031 2.0749 19 6 3.7216 -2.6013 3.1274 20 35 4.5095 -1.1729 4.0837 21 6 3.9012 -3.8839 3.4832 22 16 3.0448 -4.8914 2.3979 23 1 -0.4850 0.8400 0.0004 24 1 -0.4134 -3.0279 -1.2311 25 1 0.0410 -1.3520 -1.6221 26 1 1.9475 -2.1838 -2.9718 27 1 1.4931 -3.8598 -2.5807 28 1 -0.1356 -3.2241 -5.8049 29 1 4.4916 -4.2247 4.3209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072557.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:32 Heat of formation + Delta-G solvation = -83.623504 kcal Electronic energy + Delta-G solvation = -20212.947143 eV Core-core repulsion = 16695.315471 eV Total energy + Delta-G solvation = -3517.631672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41135 -40.97266 -39.84343 -37.24115 -36.85194 -33.89909 -33.18624 -32.18195 -30.44539 -27.58931 -27.10625 -25.28910 -22.53621 -21.81416 -20.79195 -19.86979 -19.07859 -18.47884 -17.68069 -17.56179 -16.97865 -16.46808 -16.24539 -16.17732 -15.72691 -15.10779 -14.70807 -14.42769 -14.22630 -14.00281 -13.58415 -13.09349 -12.86355 -12.72093 -12.61723 -12.53747 -12.14844 -11.99009 -11.87967 -11.64956 -11.37248 -11.13469 -11.04049 -10.66153 -10.45417 -9.76411 -9.52827 -8.35693 -6.04474 -0.74037 0.00876 0.22499 1.09468 1.20860 1.21181 1.47522 1.51112 1.56292 2.01435 2.26562 2.37963 2.85638 3.08575 3.62046 3.96242 4.06371 4.12800 4.23370 4.49828 4.65124 4.73520 4.93253 5.30304 5.54934 5.60907 5.81694 6.37808 6.49733 7.02136 7.06023 7.34810 7.77768 8.67251 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.004658 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.138094 B = 6009.589821 C = 7654.432643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.315 4.315 8 H 0.109 0.891 9 N -0.404 5.404 10 C 0.137 3.863 11 C -0.119 4.119 12 C 0.497 3.503 13 O -0.549 6.549 14 O -0.506 6.506 15 C 0.511 3.489 16 O -0.617 6.617 17 C -0.001 4.001 18 N -0.404 5.404 19 C 0.025 3.975 20 Br 0.013 6.987 21 C -0.241 4.241 22 S 0.281 5.719 23 H 0.274 0.726 24 H 0.043 0.957 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.427 0.573 29 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.298 -4.413 3.536 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.444 4.444 8 H 0.126 0.874 9 N -0.120 5.120 10 C 0.013 3.987 11 C -0.158 4.158 12 C 0.341 3.659 13 O -0.439 6.439 14 O -0.320 6.320 15 C 0.299 3.701 16 O -0.506 6.506 17 C -0.277 4.277 18 N -0.122 5.122 19 C -0.192 4.192 20 Br 0.095 6.905 21 C -0.385 4.385 22 S 0.536 5.464 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.289 0.711 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.865 -4.753 3.677 11.551 hybrid contribution -0.340 1.493 -0.007 1.532 sum 9.525 -3.259 3.670 10.715 Atomic orbital electron populations 1.69982 1.07727 1.29086 1.45377 1.26188 0.95569 1.02828 0.94700 0.85328 0.78400 0.77077 0.79941 1.18295 1.20921 1.18829 1.19900 0.95637 0.83301 1.45588 0.87373 1.43508 1.36063 1.07787 1.24596 1.21057 0.90292 1.03208 0.84122 1.21603 0.98231 1.05660 0.90285 1.23246 0.87350 0.71535 0.83792 1.90715 1.22553 1.45915 1.84752 1.84497 1.48460 1.79334 1.19726 1.17403 0.84456 0.85388 0.82835 1.90671 1.57459 1.31714 1.70750 1.27560 1.05286 0.91796 1.03066 1.67185 1.07755 1.30388 1.06849 1.22055 1.05158 0.93436 0.98502 1.96662 1.78837 1.45490 1.69530 1.27056 1.07872 0.95362 1.08183 1.83581 1.37049 1.08657 1.17105 0.91648 0.93852 0.88520 0.86232 0.87411 0.71081 0.75826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.40 11.50 21.69 0.25 -47.15 15 2 C 0.01 0.60 4.96 84.97 0.42 1.02 15 3 Si 0.97 39.99 29.59 68.60 2.03 42.01 15 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 15 7 C -0.31 -15.70 7.64 84.13 0.64 -15.06 15 8 H 0.11 5.38 6.41 -2.91 -0.02 5.36 15 9 N -0.40 -20.03 2.52 -639.67 -1.61 -21.64 15 10 C 0.14 6.50 4.08 86.38 0.35 6.85 15 11 C -0.12 -4.48 6.06 29.85 0.18 -4.30 15 12 C 0.50 17.18 8.33 71.23 0.59 17.77 15 13 O -0.55 -22.75 16.74 21.96 0.37 -22.38 15 14 O -0.51 -12.68 13.42 -51.42 -0.69 -13.37 15 15 C 0.51 24.71 7.55 86.55 0.65 25.37 15 16 O -0.62 -30.93 16.41 -4.29 -0.07 -31.00 15 17 C 0.00 -0.06 7.17 87.18 0.63 0.56 15 18 N -0.40 -17.00 7.54 -185.35 -1.40 -18.40 15 19 C 0.03 0.85 7.10 83.96 0.60 1.45 15 20 Br 0.01 0.37 33.97 -20.37 -0.69 -0.32 15 21 C -0.24 -6.28 10.89 66.92 0.73 -5.55 15 22 S 0.28 8.32 23.03 -56.49 -1.30 7.02 15 23 H 0.27 13.98 8.31 -92.71 -0.77 13.21 15 24 H 0.04 2.22 7.68 -2.39 -0.02 2.20 15 25 H 0.10 4.99 5.63 -2.39 -0.01 4.98 15 26 H 0.12 4.14 8.14 -2.39 -0.02 4.12 15 27 H 0.11 3.97 7.86 -2.39 -0.02 3.95 15 28 H 0.43 6.38 9.10 -74.06 -0.67 5.71 15 29 H 0.23 3.78 8.06 -2.91 -0.02 3.76 15 Total: -1.00 -66.45 301.02 2.25 -64.20 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.56 Total: 12.91 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: 4.80 Total: 28.11 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -2.76 Total: -87.18 kcal Atomic # 8 Polarization: -66.36 SS G_CDS: -0.39 Total: -66.76 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Atomic # 16 Polarization: 8.32 SS G_CDS: -1.30 Total: 7.02 kcal Atomic # 35 Polarization: 0.37 SS G_CDS: -0.69 Total: -0.32 kcal Total: -66.45 2.25 -64.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072557.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.424 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds