Wall clock time and date at job start Wed Apr 1 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47273 * 269.99937 * 3 2 1 5 5 H 1.48500 * 109.47252 * 29.99982 * 3 2 1 6 6 H 1.48500 * 109.47423 * 149.99830 * 3 2 1 7 7 C 1.38811 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00373 * 204.28955 * 7 2 1 9 9 N 1.36940 * 120.00243 * 24.29936 * 7 2 1 10 10 C 1.46506 * 119.99630 * 7.08736 * 9 7 2 11 11 C 1.50697 * 109.47094 * 271.98769 * 10 9 7 12 12 O 1.20828 * 119.99790 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00119 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00465 * 187.08682 * 9 7 2 15 15 C 1.50709 * 109.47059 * 89.99694 * 14 9 7 16 16 N 1.31870 * 119.61271 * 270.02507 * 15 14 9 17 17 C 1.31848 * 121.74348 * 179.97438 * 16 15 14 18 18 C 1.38330 * 120.77764 * 0.02840 * 17 16 15 19 19 Br 1.89096 * 120.41945 * 179.97438 * 18 17 16 20 20 C 1.38689 * 119.15516 * 359.92443 * 18 17 16 21 21 C 1.38308 * 119.61313 * 90.00199 * 15 14 9 22 22 Cl 1.73601 * 120.42770 * 359.72597 * 21 15 14 23 23 H 0.96999 * 120.00178 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47344 * 31.98783 * 10 9 7 25 25 H 1.09003 * 109.46893 * 151.98593 * 10 9 7 26 26 H 0.96701 * 117.00243 * 180.02562 * 13 11 10 27 27 H 1.09004 * 109.47176 * 330.00151 * 14 9 7 28 28 H 1.08998 * 109.47417 * 210.00069 * 14 9 7 29 29 H 1.08003 * 119.61284 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.79780 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0185 -1.2435 0.3853 9 7 1.4164 -2.3358 -0.4870 10 6 0.1125 -2.2526 -1.1498 11 6 -0.9823 -2.3733 -0.1214 12 8 -0.7022 -2.5138 1.0456 13 8 -2.2687 -2.3246 -0.5017 14 6 2.0850 -3.6316 -0.3458 15 6 1.6667 -4.2739 0.9519 16 7 2.3617 -4.0409 2.0481 17 6 2.0332 -4.5802 3.2055 18 6 0.9374 -5.4179 3.3104 19 35 0.4758 -6.1865 4.9753 20 6 0.1811 -5.6861 2.1793 21 6 0.5581 -5.1005 0.9791 22 17 -0.3548 -5.3950 -0.4678 23 1 -0.4850 0.8400 -0.0004 24 1 0.0258 -1.2945 -1.6621 25 1 0.0211 -3.0617 -1.8745 26 1 -2.9355 -2.4060 0.1939 27 1 3.1652 -3.4852 -0.3470 28 1 1.8049 -4.2776 -1.1778 29 1 2.6271 -4.3661 4.0818 30 1 -0.6800 -6.3359 2.2311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:27 Heat of formation + Delta-G solvation = -23.468019 kcal Electronic energy + Delta-G solvation = -21162.563147 eV Core-core repulsion = 17645.496306 eV Total energy + Delta-G solvation = -3517.066841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.966 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.94862 -38.61130 -36.37346 -35.91051 -34.35976 -33.04956 -31.86377 -31.07287 -29.60876 -27.50444 -25.99806 -23.41156 -22.93092 -21.31477 -20.06075 -17.16956 -16.78529 -16.46929 -16.34704 -15.57689 -15.47266 -14.99429 -14.21070 -13.95909 -13.51601 -13.50389 -13.17347 -12.96540 -12.17311 -11.81510 -11.79332 -11.55396 -11.26588 -11.18089 -10.91365 -10.65416 -10.61462 -10.31955 -10.20901 -10.05205 -9.95163 -9.34435 -9.25144 -9.06517 -8.66254 -8.33564 -7.32757 -6.07635 -3.30491 1.13708 1.38315 1.62211 2.38965 3.31336 3.38236 3.40387 3.88577 3.98062 4.29683 4.53931 4.71811 4.90584 5.00615 5.18385 5.33533 5.35727 5.54378 5.86963 6.05338 6.20190 6.27404 6.44823 6.71423 6.89835 6.98395 7.62826 7.91307 7.97271 8.27851 8.87715 9.43219 9.58122 9.92537 11.02921 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.004738 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.940383 B = 5908.338975 C = 6666.105504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.000 4.000 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.545 5.545 10 C 0.184 3.816 11 C 0.486 3.514 12 O -0.515 6.515 13 O -0.544 6.544 14 C 0.176 3.824 15 C 0.164 3.836 16 N -0.445 5.445 17 C 0.140 3.860 18 C -0.157 4.157 19 Br -0.050 7.050 20 C -0.038 4.038 21 C -0.070 4.070 22 Cl -0.059 7.059 23 H 0.260 0.740 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.378 0.622 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -12.898 2.984 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.198 4.198 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.262 5.262 10 C 0.055 3.945 11 C 0.326 3.674 12 O -0.401 6.401 13 O -0.354 6.354 14 C 0.048 3.952 15 C 0.022 3.978 16 N -0.155 5.155 17 C -0.021 4.021 18 C -0.239 4.239 19 Br 0.034 6.966 20 C -0.066 4.066 21 C -0.101 4.101 22 Cl -0.030 7.030 23 H 0.071 0.929 24 H 0.133 0.867 25 H 0.072 0.928 26 H 0.233 0.767 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.350 -12.441 3.373 12.895 hybrid contribution -1.304 0.587 0.705 1.594 sum -0.954 -11.854 4.078 12.572 Atomic orbital electron populations 1.69789 1.05415 1.26247 1.53014 1.24856 0.95312 0.98860 1.00790 0.86016 0.79049 0.82431 0.77760 1.21113 1.21915 1.20222 1.19539 0.96737 0.84066 1.36715 0.89157 1.44801 1.16679 1.01507 1.63171 1.20649 0.80766 1.02393 0.90678 1.24837 0.81433 0.69636 0.91464 1.90519 1.82914 1.46176 1.20476 1.84608 1.18831 1.86933 1.45010 1.20355 0.98923 0.86912 0.88982 1.22887 0.89587 0.87427 0.97943 1.67871 1.30204 1.19624 0.97825 1.22828 0.92427 0.90409 0.96409 1.22583 1.02260 1.06821 0.92278 1.96632 1.93279 1.82362 1.24291 1.21196 0.98008 0.97578 0.89829 1.21671 0.97163 1.02622 0.88609 1.98339 1.73318 1.94914 1.36430 0.92933 0.86704 0.92768 0.76671 0.90027 0.91094 0.82342 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 8.77 55.49 0.49 -24.13 16 2 C 0.00 0.00 4.94 -17.43 -0.09 -0.09 16 3 Si 0.92 21.09 29.62 -169.99 -5.03 16.06 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.24 -6.21 9.70 -15.06 -0.15 -6.36 16 8 H 0.09 2.32 7.93 -52.48 -0.42 1.90 16 9 N -0.54 -12.56 2.05 -175.97 -0.36 -12.92 16 10 C 0.18 4.11 5.01 -5.19 -0.03 4.09 16 11 C 0.49 11.28 4.53 36.00 0.16 11.44 16 12 O -0.52 -13.47 14.48 -18.75 -0.27 -13.74 16 13 O -0.54 -11.10 13.42 -39.25 -0.53 -11.63 16 14 C 0.18 3.44 5.60 -5.19 -0.03 3.41 16 15 C 0.16 3.24 5.46 -82.55 -0.45 2.79 16 16 N -0.45 -8.95 10.27 -9.42 -0.10 -9.05 16 17 C 0.14 2.43 10.94 -17.51 -0.19 2.24 16 18 C -0.16 -2.54 6.25 -39.38 -0.25 -2.79 16 19 Br -0.05 -0.66 33.74 -68.01 -2.29 -2.95 16 20 C -0.04 -0.63 9.75 -39.22 -0.38 -1.02 16 21 C -0.07 -1.27 4.85 -39.36 -0.19 -1.46 16 22 Cl -0.06 -0.95 24.31 -51.86 -1.26 -2.22 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.12 2.80 6.32 -51.93 -0.33 2.47 16 25 H 0.05 1.05 7.17 -51.93 -0.37 0.68 16 26 H 0.38 6.40 9.10 45.56 0.41 6.82 16 27 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 28 H 0.07 1.21 6.64 -51.93 -0.34 0.86 16 29 H 0.16 2.33 8.06 -52.48 -0.42 1.91 16 30 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -30.34 294.61 -7.95 -38.29 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -1.44 Total: 5.59 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -1.59 Total: 12.27 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.03 Total: -46.10 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.80 Total: -25.37 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.26 Total: -2.22 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.34 -7.95 -38.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.817 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds