Wall clock time and date at job start Wed Apr 1 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47273 * 269.99937 * 3 2 1 5 5 H 1.48500 * 109.47252 * 29.99982 * 3 2 1 6 6 H 1.48500 * 109.47423 * 149.99830 * 3 2 1 7 7 C 1.38811 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00373 * 204.28955 * 7 2 1 9 9 N 1.36940 * 120.00243 * 24.29936 * 7 2 1 10 10 C 1.46506 * 119.99630 * 7.08736 * 9 7 2 11 11 C 1.50697 * 109.47094 * 271.98769 * 10 9 7 12 12 O 1.20828 * 119.99790 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00119 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00465 * 187.08682 * 9 7 2 15 15 C 1.50709 * 109.47059 * 89.99694 * 14 9 7 16 16 N 1.31870 * 119.61271 * 270.02507 * 15 14 9 17 17 C 1.31848 * 121.74348 * 179.97438 * 16 15 14 18 18 C 1.38330 * 120.77764 * 0.02840 * 17 16 15 19 19 Br 1.89096 * 120.41945 * 179.97438 * 18 17 16 20 20 C 1.38689 * 119.15516 * 359.92443 * 18 17 16 21 21 C 1.38308 * 119.61313 * 90.00199 * 15 14 9 22 22 Cl 1.73601 * 120.42770 * 359.72597 * 21 15 14 23 23 H 0.96999 * 120.00178 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47344 * 31.98783 * 10 9 7 25 25 H 1.09003 * 109.46893 * 151.98593 * 10 9 7 26 26 H 0.96701 * 117.00243 * 180.02562 * 13 11 10 27 27 H 1.09004 * 109.47176 * 330.00151 * 14 9 7 28 28 H 1.08998 * 109.47417 * 210.00069 * 14 9 7 29 29 H 1.08003 * 119.61284 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.79780 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0185 -1.2435 0.3853 9 7 1.4164 -2.3358 -0.4870 10 6 0.1125 -2.2526 -1.1498 11 6 -0.9823 -2.3733 -0.1214 12 8 -0.7022 -2.5138 1.0456 13 8 -2.2687 -2.3246 -0.5017 14 6 2.0850 -3.6316 -0.3458 15 6 1.6667 -4.2739 0.9519 16 7 2.3617 -4.0409 2.0481 17 6 2.0332 -4.5802 3.2055 18 6 0.9374 -5.4179 3.3104 19 35 0.4758 -6.1865 4.9753 20 6 0.1811 -5.6861 2.1793 21 6 0.5581 -5.1005 0.9791 22 17 -0.3548 -5.3950 -0.4678 23 1 -0.4850 0.8400 -0.0004 24 1 0.0258 -1.2945 -1.6621 25 1 0.0211 -3.0617 -1.8745 26 1 -2.9355 -2.4060 0.1939 27 1 3.1652 -3.4852 -0.3470 28 1 1.8049 -4.2776 -1.1778 29 1 2.6271 -4.3661 4.0818 30 1 -0.6800 -6.3359 2.2311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:27 Heat of formation + Delta-G solvation = -42.346795 kcal Electronic energy + Delta-G solvation = -21163.381792 eV Core-core repulsion = 17645.496306 eV Total energy + Delta-G solvation = -3517.885486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.966 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36571 -40.35989 -37.76989 -37.54248 -36.12994 -34.51754 -33.46766 -32.54430 -31.04135 -29.21488 -27.63789 -24.86847 -24.54727 -22.84411 -21.79497 -18.89755 -18.47161 -18.00147 -17.78013 -17.25738 -17.00964 -16.62062 -15.97423 -15.53457 -15.29092 -14.96726 -14.68532 -14.34969 -13.67092 -13.44418 -13.25412 -13.13640 -12.93681 -12.82120 -12.42993 -12.21931 -12.18410 -11.95433 -11.89093 -11.73112 -11.48187 -11.06755 -10.61303 -10.57309 -10.47482 -9.72244 -9.13223 -7.99980 -5.25414 -0.22944 0.02593 0.35336 1.03441 1.49565 1.51378 1.59029 2.18971 2.39496 2.58962 2.84618 3.19517 3.41215 3.57877 3.64378 3.69804 4.03199 4.14353 4.47863 4.58895 4.68204 4.78605 4.94712 5.18152 5.25111 5.33530 5.66193 6.13458 6.25378 6.85816 6.99595 7.62626 7.83367 8.07221 9.08977 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.004738 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.940383 B = 5908.338975 C = 6666.105504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.047 4.047 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.559 5.559 10 C 0.187 3.813 11 C 0.493 3.507 12 O -0.547 6.547 13 O -0.539 6.539 14 C 0.175 3.825 15 C 0.147 3.853 16 N -0.474 5.474 17 C 0.127 3.873 18 C -0.152 4.152 19 Br -0.015 7.015 20 C -0.041 4.041 21 C -0.076 4.076 22 Cl -0.044 7.044 23 H 0.250 0.750 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.395 0.605 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.181 0.819 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -14.405 3.476 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.242 4.242 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.233 1.233 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.277 5.277 10 C 0.058 3.942 11 C 0.334 3.666 12 O -0.435 6.435 13 O -0.350 6.350 14 C 0.048 3.952 15 C 0.006 3.994 16 N -0.184 5.184 17 C -0.033 4.033 18 C -0.234 4.234 19 Br 0.069 6.931 20 C -0.069 4.069 21 C -0.106 4.106 22 Cl -0.016 7.016 23 H 0.060 0.940 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.252 0.748 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.198 0.802 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.106 -13.996 3.870 14.522 hybrid contribution -1.244 0.807 0.660 1.623 sum -1.138 -13.188 4.530 13.991 Atomic orbital electron populations 1.69919 1.06229 1.25732 1.55477 1.25417 0.95937 1.01071 1.01774 0.85195 0.77760 0.79340 0.77678 1.20428 1.23324 1.20032 1.19592 0.96634 0.85402 1.35683 0.90003 1.44602 1.16970 1.02294 1.63830 1.20538 0.80663 1.02205 0.90801 1.24881 0.82093 0.68626 0.90982 1.90497 1.83545 1.47779 1.21693 1.84546 1.18445 1.86419 1.45586 1.20418 0.98673 0.86038 0.90049 1.22782 0.90240 0.88813 0.97593 1.67804 1.31342 1.20480 0.98760 1.23228 0.93255 0.90407 0.96379 1.22808 1.01254 1.05603 0.93745 1.96672 1.92978 1.81609 1.21803 1.21535 0.98570 0.97418 0.89400 1.21761 0.96708 1.02358 0.89801 1.98337 1.72815 1.94741 1.35674 0.94019 0.88966 0.89983 0.74765 0.89929 0.88752 0.80231 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.42 8.77 21.65 0.19 -51.23 16 2 C -0.05 -2.51 4.94 84.86 0.42 -2.09 16 3 Si 0.97 44.08 29.62 68.60 2.03 46.12 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.24 -12.61 9.70 84.03 0.81 -11.79 16 8 H 0.08 4.26 7.93 -2.91 -0.02 4.24 16 9 N -0.56 -25.64 2.05 -710.66 -1.46 -27.10 16 10 C 0.19 8.26 5.01 85.63 0.43 8.69 16 11 C 0.49 22.50 4.53 71.24 0.32 22.82 16 12 O -0.55 -28.29 14.48 21.96 0.32 -27.98 16 13 O -0.54 -21.32 13.42 -51.37 -0.69 -22.01 16 14 C 0.17 6.71 5.60 85.64 0.48 7.19 16 15 C 0.15 5.69 5.46 42.57 0.23 5.93 16 16 N -0.47 -18.71 10.27 -183.71 -1.89 -20.60 16 17 C 0.13 4.23 10.94 84.71 0.93 5.16 16 18 C -0.15 -4.59 6.25 22.40 0.14 -4.45 16 19 Br -0.01 -0.35 33.74 -20.37 -0.69 -1.04 16 20 C -0.04 -1.28 9.75 22.50 0.22 -1.06 16 21 C -0.08 -2.62 4.85 22.41 0.11 -2.51 16 22 Cl -0.04 -1.36 24.31 -2.72 -0.07 -1.42 16 23 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 24 H 0.09 4.54 6.32 -2.39 -0.02 4.52 16 25 H 0.08 3.07 7.17 -2.39 -0.02 3.06 16 26 H 0.40 12.76 9.10 -74.06 -0.67 12.09 16 27 H 0.08 3.08 8.03 -2.38 -0.02 3.06 16 28 H 0.09 3.07 6.64 -2.39 -0.02 3.06 16 29 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -64.19 294.61 2.38 -61.80 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.54 Total: 15.59 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 4.09 Total: 27.88 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.15 Total: -98.94 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.37 Total: -49.99 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.42 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.04 kcal Total: -64.19 2.38 -61.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.457 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds