Wall clock time and date at job start Wed Apr 1 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46941 * 2 1 4 4 H 1.08995 * 109.46942 * 301.85536 * 3 2 1 5 5 C 1.50703 * 109.46904 * 181.85262 * 3 2 1 6 6 H 1.07994 * 119.99918 * 273.39390 * 5 3 2 7 7 C 1.37879 * 119.99613 * 93.11805 * 5 3 2 8 8 N 1.31511 * 119.99938 * 190.53428 * 7 5 3 9 9 Si 1.86800 * 120.00052 * 10.53917 * 7 5 3 10 10 H 1.48502 * 109.47288 * 86.19732 * 9 7 5 11 11 H 1.48500 * 109.47107 * 206.19752 * 9 7 5 12 12 H 1.48502 * 109.47333 * 326.20055 * 9 7 5 13 13 N 1.46506 * 109.46852 * 61.85703 * 3 2 1 14 14 S 1.65600 * 119.99729 * 241.09556 * 13 3 2 15 15 O 1.42090 * 106.40427 * 50.20980 * 14 13 3 16 16 O 1.42102 * 106.39839 * 183.13514 * 14 13 3 17 17 C 1.76207 * 107.21643 * 296.66969 * 14 13 3 18 18 C 1.38662 * 120.45403 * 118.57619 * 17 14 13 19 19 C 1.38523 * 118.50808 * 179.80297 * 18 17 14 20 20 C 1.38793 * 119.34328 * 0.45909 * 19 18 17 21 21 Cl 1.73604 * 119.56281 * 179.77139 * 20 19 18 22 22 N 1.31572 * 120.87415 * 359.78615 * 20 19 18 23 23 C 1.32813 * 121.61932 * 359.97438 * 22 20 19 24 24 C 1.48068 * 119.71723 * 180.02562 * 23 22 20 25 25 O 1.21432 * 119.99922 * 185.91103 * 24 23 22 26 26 O 1.34677 * 119.99643 * 5.90264 * 24 23 22 27 27 H 1.09002 * 109.47201 * 300.73063 * 1 2 3 28 28 H 1.09001 * 109.47817 * 60.73536 * 1 2 3 29 29 H 1.09008 * 109.47122 * 180.73609 * 1 2 3 30 30 H 1.09000 * 109.47220 * 240.00536 * 2 1 3 31 31 H 1.08998 * 109.47360 * 120.00380 * 2 1 3 32 32 H 0.96997 * 119.99898 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00048 * 61.09070 * 13 3 2 34 34 H 1.08004 * 120.74480 * 0.02562 * 18 17 14 35 35 H 1.08001 * 120.32546 * 180.22076 * 19 18 17 36 36 H 0.96706 * 116.99582 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6497 1.9658 -0.8728 5 6 3.5463 1.4428 -0.0459 6 1 4.1144 1.3775 0.8701 7 6 4.1989 1.5207 -1.2580 8 7 5.4961 1.3138 -1.3207 9 14 3.2406 1.9203 -2.8108 10 1 3.1360 3.3939 -2.9626 11 1 3.9447 1.3503 -3.9875 12 1 1.8792 1.3346 -2.7170 13 7 1.5884 2.1201 1.2180 14 16 0.6100 3.4518 1.1104 15 8 -0.4590 3.0955 0.2449 16 8 0.4130 3.9134 2.4398 17 6 1.5264 4.7064 0.2789 18 6 1.0799 5.2185 -0.9299 19 6 1.8297 6.2066 -1.5466 20 6 3.0018 6.6453 -0.9465 21 17 3.9489 7.8791 -1.7174 22 7 3.4047 6.1381 0.1987 23 6 2.7120 5.1930 0.8239 24 6 3.2043 4.6524 2.1114 25 8 2.6352 3.7156 2.6339 26 8 4.2834 5.1997 2.7029 27 1 -0.3634 0.5251 0.8834 28 1 -0.3635 0.5023 -0.8965 29 1 -0.3634 -1.0277 0.0132 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9553 1.3689 -2.1734 33 1 1.8625 1.7886 2.0874 34 1 0.1662 4.8576 -1.3786 35 1 1.5073 6.6287 -2.4870 36 1 4.5672 4.8130 3.5426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609912059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:55 Heat of formation + Delta-G solvation = -115.973612 kcal Electronic energy + Delta-G solvation = -28119.248719 eV Core-core repulsion = 23950.475022 eV Total energy + Delta-G solvation = -4168.773697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93069 -39.51557 -36.94521 -36.89998 -36.33116 -35.72158 -35.38683 -33.10703 -32.35227 -31.75418 -30.82219 -27.27326 -25.83766 -24.24275 -22.85853 -22.06362 -20.25955 -19.29999 -18.59941 -18.18765 -17.60525 -17.10644 -16.91670 -16.34905 -15.81331 -15.68330 -15.46489 -14.50684 -14.44920 -14.08393 -13.92360 -13.64621 -13.46020 -13.04896 -12.89167 -12.33923 -12.11911 -12.02399 -11.73248 -11.68841 -11.59230 -11.49947 -11.35384 -11.30305 -11.02918 -10.84832 -10.70562 -10.59733 -10.39071 -10.06995 -9.97420 -9.89361 -9.62225 -9.51548 -8.70964 -8.34656 -6.31393 -4.30282 -0.05788 0.61679 0.89319 1.43011 2.28673 2.72417 3.04777 3.17721 3.19090 3.30754 3.54388 3.99032 4.12302 4.18512 4.37581 4.56088 4.79641 4.99109 5.02976 5.27578 5.35457 5.51978 5.88679 5.92353 5.98341 6.04973 6.26369 6.44142 6.58375 6.69804 6.83656 7.09949 7.13693 7.18232 7.41417 7.82673 8.08838 8.31090 8.77810 9.30463 10.80976 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.006756 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.714664 B = 4143.199305 C = 5034.545952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.242 3.758 4 H 0.041 0.959 5 C -0.525 4.525 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.881 5.881 9 Si 0.842 3.158 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.253 1.253 13 N -1.072 6.072 14 S 2.698 3.302 15 O -0.966 6.966 16 O -0.955 6.955 17 C -0.669 4.669 18 C 0.022 3.978 19 C -0.148 4.148 20 C 0.213 3.787 21 Cl -0.013 7.013 22 N -0.439 5.439 23 C 0.229 3.771 24 C 0.539 3.461 25 O -0.465 6.465 26 O -0.484 6.484 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 9.137 0.769 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.137 3.863 4 H 0.059 0.941 5 C -0.565 4.565 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.517 5.517 9 Si 0.668 3.332 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.177 1.177 13 N -0.836 5.836 14 S 2.780 3.220 15 O -0.955 6.955 16 O -0.945 6.945 17 C -0.752 4.752 18 C -0.004 4.004 19 C -0.169 4.169 20 C 0.047 3.953 21 Cl 0.016 6.984 22 N -0.153 5.153 23 C 0.090 3.910 24 C 0.378 3.622 25 O -0.350 6.350 26 O -0.294 6.294 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.256 0.744 34 H 0.192 0.808 35 H 0.180 0.820 36 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -6.580 9.648 0.853 11.709 hybrid contribution 0.284 0.097 -1.079 1.120 sum -6.296 9.745 -0.225 11.604 Atomic orbital electron populations 1.21882 0.97553 0.99926 1.01765 1.21963 0.93452 0.98723 1.01904 1.19050 0.95402 0.90071 0.81780 0.94132 1.21240 0.88852 1.51421 0.94974 0.89928 1.24951 0.94697 0.94356 0.98357 1.69889 1.08352 1.47221 1.26239 0.87340 0.81845 0.79666 0.84378 1.19838 1.20463 1.17663 1.55540 1.69684 1.42288 1.16108 1.02074 0.73482 0.73319 0.73076 1.93565 1.50579 1.82440 1.68961 1.93567 1.85308 1.81139 1.34500 1.32562 1.10889 1.21764 1.09985 1.21472 0.98444 0.90382 0.90117 1.22210 0.94280 0.98399 1.02031 1.21882 0.90531 0.91820 0.91040 1.98429 1.72448 1.49983 1.77587 1.66996 1.31336 1.09007 1.07939 1.19252 0.89120 0.90943 0.91716 1.20043 0.78458 0.80343 0.83341 1.90877 1.55602 1.25667 1.62837 1.84588 1.43676 1.60230 1.40891 0.93297 0.92981 0.94055 0.91858 0.92055 0.92294 0.74379 0.80836 0.82017 0.72210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.40 37.15 0.35 -2.37 16 2 C -0.12 -2.38 5.61 -26.73 -0.15 -2.53 16 3 C 0.24 5.26 2.00 -69.07 -0.14 5.12 16 4 H 0.04 0.90 4.73 -51.93 -0.25 0.65 16 5 C -0.53 -13.33 9.16 -34.44 -0.32 -13.64 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 8 N -0.88 -25.07 13.96 55.43 0.77 -24.30 16 9 Si 0.84 19.53 27.19 -169.99 -4.62 14.91 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.25 -5.52 6.58 56.52 0.37 -5.15 16 13 N -1.07 -21.06 3.31 -5.88 -0.02 -21.08 16 14 S 2.70 50.95 4.75 -107.50 -0.51 50.44 16 15 O -0.97 -18.50 16.08 -57.17 -0.92 -19.42 16 16 O -0.96 -19.20 15.42 -67.16 -1.04 -20.24 16 17 C -0.67 -12.05 5.89 -39.04 -0.23 -12.28 16 18 C 0.02 0.33 9.66 -39.32 -0.38 -0.05 16 19 C -0.15 -2.01 9.88 -39.27 -0.39 -2.40 16 20 C 0.21 3.34 7.27 -17.46 -0.13 3.21 16 21 Cl -0.01 -0.17 29.11 -51.86 -1.51 -1.68 16 22 N -0.44 -7.95 10.10 -6.94 -0.07 -8.02 16 23 C 0.23 4.30 6.75 -83.03 -0.56 3.74 16 24 C 0.54 9.74 8.17 34.76 0.28 10.03 16 25 O -0.46 -8.74 10.53 -27.36 -0.29 -9.03 16 26 O -0.48 -7.18 13.25 -40.43 -0.54 -7.71 16 27 H 0.05 0.84 7.36 -51.93 -0.38 0.46 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.42 7.80 7.69 -34.47 -0.27 7.54 16 34 H 0.17 2.11 7.45 -52.48 -0.39 1.72 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.42 3.88 9.11 45.56 0.42 4.29 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -32.32 337.10 -7.98 -40.30 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.57 Total: 9.85 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.75 Total: -9.11 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.68 Total: -53.39 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -2.78 Total: -56.41 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.62 Total: 14.91 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.51 Total: 50.44 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.32 -7.98 -40.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.672 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds