Wall clock time and date at job start Wed Apr 1 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46941 * 2 1 4 4 H 1.08995 * 109.46942 * 301.85536 * 3 2 1 5 5 C 1.50703 * 109.46904 * 181.85262 * 3 2 1 6 6 H 1.07994 * 119.99918 * 273.39390 * 5 3 2 7 7 C 1.37879 * 119.99613 * 93.11805 * 5 3 2 8 8 N 1.31511 * 119.99938 * 190.53428 * 7 5 3 9 9 Si 1.86800 * 120.00052 * 10.53917 * 7 5 3 10 10 H 1.48502 * 109.47288 * 86.19732 * 9 7 5 11 11 H 1.48500 * 109.47107 * 206.19752 * 9 7 5 12 12 H 1.48502 * 109.47333 * 326.20055 * 9 7 5 13 13 N 1.46506 * 109.46852 * 61.85703 * 3 2 1 14 14 S 1.65600 * 119.99729 * 241.09556 * 13 3 2 15 15 O 1.42090 * 106.40427 * 50.20980 * 14 13 3 16 16 O 1.42102 * 106.39839 * 183.13514 * 14 13 3 17 17 C 1.76207 * 107.21643 * 296.66969 * 14 13 3 18 18 C 1.38662 * 120.45403 * 118.57619 * 17 14 13 19 19 C 1.38523 * 118.50808 * 179.80297 * 18 17 14 20 20 C 1.38793 * 119.34328 * 0.45909 * 19 18 17 21 21 Cl 1.73604 * 119.56281 * 179.77139 * 20 19 18 22 22 N 1.31572 * 120.87415 * 359.78615 * 20 19 18 23 23 C 1.32813 * 121.61932 * 359.97438 * 22 20 19 24 24 C 1.48068 * 119.71723 * 180.02562 * 23 22 20 25 25 O 1.21432 * 119.99922 * 185.91103 * 24 23 22 26 26 O 1.34677 * 119.99643 * 5.90264 * 24 23 22 27 27 H 1.09002 * 109.47201 * 300.73063 * 1 2 3 28 28 H 1.09001 * 109.47817 * 60.73536 * 1 2 3 29 29 H 1.09008 * 109.47122 * 180.73609 * 1 2 3 30 30 H 1.09000 * 109.47220 * 240.00536 * 2 1 3 31 31 H 1.08998 * 109.47360 * 120.00380 * 2 1 3 32 32 H 0.96997 * 119.99898 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00048 * 61.09070 * 13 3 2 34 34 H 1.08004 * 120.74480 * 0.02562 * 18 17 14 35 35 H 1.08001 * 120.32546 * 180.22076 * 19 18 17 36 36 H 0.96706 * 116.99582 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6497 1.9658 -0.8728 5 6 3.5463 1.4428 -0.0459 6 1 4.1144 1.3775 0.8701 7 6 4.1989 1.5207 -1.2580 8 7 5.4961 1.3138 -1.3207 9 14 3.2406 1.9203 -2.8108 10 1 3.1360 3.3939 -2.9626 11 1 3.9447 1.3503 -3.9875 12 1 1.8792 1.3346 -2.7170 13 7 1.5884 2.1201 1.2180 14 16 0.6100 3.4518 1.1104 15 8 -0.4590 3.0955 0.2449 16 8 0.4130 3.9134 2.4398 17 6 1.5264 4.7064 0.2789 18 6 1.0799 5.2185 -0.9299 19 6 1.8297 6.2066 -1.5466 20 6 3.0018 6.6453 -0.9465 21 17 3.9489 7.8791 -1.7174 22 7 3.4047 6.1381 0.1987 23 6 2.7120 5.1930 0.8239 24 6 3.2043 4.6524 2.1114 25 8 2.6352 3.7156 2.6339 26 8 4.2834 5.1997 2.7029 27 1 -0.3634 0.5251 0.8834 28 1 -0.3635 0.5023 -0.8965 29 1 -0.3634 -1.0277 0.0132 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9553 1.3689 -2.1734 33 1 1.8625 1.7886 2.0874 34 1 0.1662 4.8576 -1.3786 35 1 1.5073 6.6287 -2.4870 36 1 4.5672 4.8130 3.5426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609912059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:54 Heat of formation + Delta-G solvation = -140.965206 kcal Electronic energy + Delta-G solvation = -28120.332436 eV Core-core repulsion = 23950.475022 eV Total energy + Delta-G solvation = -4169.857414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19373 -40.78891 -38.40285 -38.04515 -37.85722 -37.15005 -36.90232 -34.35564 -34.27834 -32.98907 -32.33137 -29.08531 -27.09555 -25.46824 -24.59064 -23.34189 -21.88260 -20.76169 -19.87320 -19.67084 -19.11848 -18.56692 -18.23388 -17.95520 -17.16951 -17.10590 -16.85296 -16.17157 -15.70883 -15.58807 -15.23327 -14.94310 -14.74898 -14.72623 -14.36618 -14.04543 -13.70589 -13.29832 -13.18636 -13.13476 -13.09828 -12.79076 -12.71026 -12.69434 -12.57363 -12.40351 -12.27130 -12.05298 -11.76533 -11.66633 -11.57207 -11.40491 -11.22270 -10.72730 -10.65278 -10.00141 -8.33367 -6.35709 -1.32630 -0.60954 -0.52070 0.29154 1.00855 1.23960 1.31350 1.38973 1.50860 1.95750 2.11777 2.28036 2.64307 2.85423 3.02039 3.12383 3.41002 3.63406 3.84179 4.04515 4.16211 4.21460 4.37004 4.48142 4.56098 4.73000 4.82845 5.02618 5.20400 5.26050 5.30447 5.47544 5.55504 5.66990 5.88844 6.32254 6.42418 6.71013 6.74269 7.28370 8.82345 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.006756 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.714664 B = 4143.199305 C = 5034.545952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.247 3.753 4 H 0.044 0.956 5 C -0.517 4.517 6 H 0.044 0.956 7 C 0.029 3.971 8 N -0.931 5.931 9 Si 0.886 3.114 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.228 1.228 13 N -1.075 6.075 14 S 2.714 3.286 15 O -0.967 6.967 16 O -0.971 6.971 17 C -0.688 4.688 18 C 0.017 3.983 19 C -0.131 4.131 20 C 0.196 3.804 21 Cl 0.007 6.993 22 N -0.461 5.461 23 C 0.203 3.797 24 C 0.530 3.470 25 O -0.483 6.483 26 O -0.481 6.481 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.266 0.734 33 H 0.421 0.579 34 H 0.205 0.795 35 H 0.211 0.789 36 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 10.082 -0.983 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.141 3.859 4 H 0.062 0.938 5 C -0.557 4.557 6 H 0.063 0.937 7 C -0.171 4.171 8 N -0.570 5.570 9 Si 0.708 3.292 10 H -0.181 1.181 11 H -0.207 1.207 12 H -0.151 1.151 13 N -0.838 5.838 14 S 2.798 3.202 15 O -0.957 6.957 16 O -0.961 6.961 17 C -0.773 4.773 18 C -0.008 4.008 19 C -0.151 4.151 20 C 0.031 3.969 21 Cl 0.036 6.964 22 N -0.176 5.176 23 C 0.064 3.936 24 C 0.370 3.630 25 O -0.370 6.370 26 O -0.294 6.294 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.258 0.742 34 H 0.222 0.778 35 H 0.228 0.772 36 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -8.643 10.584 -0.860 13.692 hybrid contribution 0.996 -0.089 -0.463 1.102 sum -7.647 10.495 -1.323 13.053 Atomic orbital electron populations 1.21841 0.95403 1.01736 1.01754 1.21924 0.95369 0.97176 1.01802 1.18909 0.92898 0.91524 0.82616 0.93789 1.21368 0.90842 1.50090 0.93419 0.93748 1.25669 0.95379 0.94481 1.01608 1.70035 1.10292 1.49797 1.26917 0.86610 0.81687 0.80548 0.80367 1.18113 1.20741 1.15078 1.55370 1.69753 1.43078 1.15560 1.01427 0.73114 0.72920 0.72756 1.93554 1.50745 1.82618 1.68782 1.93545 1.85597 1.81236 1.35755 1.32439 1.11040 1.22258 1.11573 1.22009 0.99497 0.90322 0.89021 1.22762 0.92572 0.96829 1.02983 1.22387 0.91632 0.92197 0.90707 1.98435 1.72119 1.48938 1.76880 1.66968 1.31961 1.09382 1.09240 1.19393 0.89943 0.91975 0.92313 1.20284 0.78811 0.80234 0.83629 1.90845 1.56286 1.26434 1.63425 1.84550 1.42602 1.60100 1.42149 0.93223 0.93024 0.91441 0.92377 0.91921 0.92526 0.74181 0.77777 0.77236 0.69830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 9.40 71.98 0.68 -4.22 16 2 C -0.12 -4.68 5.61 30.59 0.17 -4.51 16 3 C 0.25 10.50 2.00 44.25 0.09 10.58 16 4 H 0.04 1.85 4.73 -2.39 -0.01 1.84 16 5 C -0.52 -26.68 9.16 25.60 0.23 -26.45 16 6 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 7 C 0.03 1.53 5.47 84.66 0.46 1.99 16 8 N -0.93 -54.44 13.96 21.45 0.30 -54.15 16 9 Si 0.89 38.82 27.19 68.60 1.87 40.68 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.23 -9.03 6.58 99.48 0.65 -8.37 16 13 N -1.07 -41.80 3.31 -172.50 -0.57 -42.37 16 14 S 2.71 99.30 4.75 -56.49 -0.27 99.03 16 15 O -0.97 -34.73 16.08 -128.00 -2.06 -36.78 16 16 O -0.97 -38.69 15.42 -118.45 -1.83 -40.51 16 17 C -0.69 -23.76 5.89 22.62 0.13 -23.63 16 18 C 0.02 0.46 9.66 22.44 0.22 0.68 16 19 C -0.13 -3.05 9.88 22.47 0.22 -2.83 16 20 C 0.20 5.70 7.27 84.86 0.62 6.32 16 21 Cl 0.01 0.18 29.11 -2.72 -0.08 0.10 16 22 N -0.46 -16.31 10.10 -175.88 -1.78 -18.09 16 23 C 0.20 7.55 6.75 41.85 0.28 7.83 16 24 C 0.53 19.49 8.17 70.43 0.58 20.07 16 25 O -0.48 -18.57 10.53 27.85 0.29 -18.28 16 26 O -0.48 -14.52 13.25 -55.86 -0.74 -15.26 16 27 H 0.05 1.60 7.36 -2.39 -0.02 1.58 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.42 15.91 7.69 -96.75 -0.74 15.16 16 34 H 0.21 4.06 7.45 -2.91 -0.02 4.04 16 35 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.44 8.30 9.11 -74.05 -0.67 7.63 16 Total: -1.00 -70.68 337.10 -1.48 -72.16 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.30 Total: 27.62 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.68 Total: -14.17 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -2.05 Total: -114.60 kcal Atomic # 8 Polarization: -106.50 SS G_CDS: -4.33 Total: -110.83 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.87 Total: 40.68 kcal Atomic # 16 Polarization: 99.30 SS G_CDS: -0.27 Total: 99.03 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.10 kcal Total: -70.68 -1.48 -72.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.804 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds