Wall clock time and date at job start Wed Apr 1 2020 05:38:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53005 * 109.46941 * 2 1
4 4 H 1.08995 * 109.46942 * 301.85536 * 3 2 1
5 5 C 1.50703 * 109.46904 * 181.85262 * 3 2 1
6 6 H 1.07994 * 119.99918 * 273.39390 * 5 3 2
7 7 C 1.37879 * 119.99613 * 93.11805 * 5 3 2
8 8 N 1.31511 * 119.99938 * 190.53428 * 7 5 3
9 9 Si 1.86800 * 120.00052 * 10.53917 * 7 5 3
10 10 H 1.48502 * 109.47288 * 86.19732 * 9 7 5
11 11 H 1.48500 * 109.47107 * 206.19752 * 9 7 5
12 12 H 1.48502 * 109.47333 * 326.20055 * 9 7 5
13 13 N 1.46506 * 109.46852 * 61.85703 * 3 2 1
14 14 S 1.65600 * 119.99729 * 241.09556 * 13 3 2
15 15 O 1.42090 * 106.40427 * 50.20980 * 14 13 3
16 16 O 1.42102 * 106.39839 * 183.13514 * 14 13 3
17 17 C 1.76207 * 107.21643 * 296.66969 * 14 13 3
18 18 C 1.38662 * 120.45403 * 118.57619 * 17 14 13
19 19 C 1.38523 * 118.50808 * 179.80297 * 18 17 14
20 20 C 1.38793 * 119.34328 * 0.45909 * 19 18 17
21 21 Cl 1.73604 * 119.56281 * 179.77139 * 20 19 18
22 22 N 1.31572 * 120.87415 * 359.78615 * 20 19 18
23 23 C 1.32813 * 121.61932 * 359.97438 * 22 20 19
24 24 C 1.48068 * 119.71723 * 180.02562 * 23 22 20
25 25 O 1.21432 * 119.99922 * 185.91103 * 24 23 22
26 26 O 1.34677 * 119.99643 * 5.90264 * 24 23 22
27 27 H 1.09002 * 109.47201 * 300.73063 * 1 2 3
28 28 H 1.09001 * 109.47817 * 60.73536 * 1 2 3
29 29 H 1.09008 * 109.47122 * 180.73609 * 1 2 3
30 30 H 1.09000 * 109.47220 * 240.00536 * 2 1 3
31 31 H 1.08998 * 109.47360 * 120.00380 * 2 1 3
32 32 H 0.96997 * 119.99898 * 180.02562 * 8 7 5
33 33 H 0.96997 * 120.00048 * 61.09070 * 13 3 2
34 34 H 1.08004 * 120.74480 * 0.02562 * 18 17 14
35 35 H 1.08001 * 120.32546 * 180.22076 * 19 18 17
36 36 H 0.96706 * 116.99582 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6497 1.9658 -0.8728
5 6 3.5463 1.4428 -0.0459
6 1 4.1144 1.3775 0.8701
7 6 4.1989 1.5207 -1.2580
8 7 5.4961 1.3138 -1.3207
9 14 3.2406 1.9203 -2.8108
10 1 3.1360 3.3939 -2.9626
11 1 3.9447 1.3503 -3.9875
12 1 1.8792 1.3346 -2.7170
13 7 1.5884 2.1201 1.2180
14 16 0.6100 3.4518 1.1104
15 8 -0.4590 3.0955 0.2449
16 8 0.4130 3.9134 2.4398
17 6 1.5264 4.7064 0.2789
18 6 1.0799 5.2185 -0.9299
19 6 1.8297 6.2066 -1.5466
20 6 3.0018 6.6453 -0.9465
21 17 3.9489 7.8791 -1.7174
22 7 3.4047 6.1381 0.1987
23 6 2.7120 5.1930 0.8239
24 6 3.2043 4.6524 2.1114
25 8 2.6352 3.7156 2.6339
26 8 4.2834 5.1997 2.7029
27 1 -0.3634 0.5251 0.8834
28 1 -0.3635 0.5023 -0.8965
29 1 -0.3634 -1.0277 0.0132
30 1 1.8933 -0.5137 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 5.9553 1.3689 -2.1734
33 1 1.8625 1.7886 2.0874
34 1 0.1662 4.8576 -1.3786
35 1 1.5073 6.6287 -2.4870
36 1 4.5672 4.8130 3.5426
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001609912059.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:38:54
Heat of formation + Delta-G solvation = -140.965206 kcal
Electronic energy + Delta-G solvation = -28120.332436 eV
Core-core repulsion = 23950.475022 eV
Total energy + Delta-G solvation = -4169.857414 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.042 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.19373 -40.78891 -38.40285 -38.04515 -37.85722 -37.15005 -36.90232 -34.35564
-34.27834 -32.98907 -32.33137 -29.08531 -27.09555 -25.46824 -24.59064 -23.34189
-21.88260 -20.76169 -19.87320 -19.67084 -19.11848 -18.56692 -18.23388 -17.95520
-17.16951 -17.10590 -16.85296 -16.17157 -15.70883 -15.58807 -15.23327 -14.94310
-14.74898 -14.72623 -14.36618 -14.04543 -13.70589 -13.29832 -13.18636 -13.13476
-13.09828 -12.79076 -12.71026 -12.69434 -12.57363 -12.40351 -12.27130 -12.05298
-11.76533 -11.66633 -11.57207 -11.40491 -11.22270 -10.72730 -10.65278 -10.00141
-8.33367 -6.35709 -1.32630 -0.60954 -0.52070 0.29154 1.00855 1.23960
1.31350 1.38973 1.50860 1.95750 2.11777 2.28036 2.64307 2.85423
3.02039 3.12383 3.41002 3.63406 3.84179 4.04515 4.16211 4.21460
4.37004 4.48142 4.56098 4.73000 4.82845 5.02618 5.20400 5.26050
5.30447 5.47544 5.55504 5.66990 5.88844 6.32254 6.42418 6.71013
6.74269 7.28370 8.82345
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.009984 B = 0.006756 C = 0.005560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2803.714664 B = 4143.199305 C = 5034.545952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.122 4.122
3 C 0.247 3.753
4 H 0.044 0.956
5 C -0.517 4.517
6 H 0.044 0.956
7 C 0.029 3.971
8 N -0.931 5.931
9 Si 0.886 3.114
10 H -0.257 1.257
11 H -0.282 1.282
12 H -0.228 1.228
13 N -1.075 6.075
14 S 2.714 3.286
15 O -0.967 6.967
16 O -0.971 6.971
17 C -0.688 4.688
18 C 0.017 3.983
19 C -0.131 4.131
20 C 0.196 3.804
21 Cl 0.007 6.993
22 N -0.461 5.461
23 C 0.203 3.797
24 C 0.530 3.470
25 O -0.483 6.483
26 O -0.481 6.481
27 H 0.049 0.951
28 H 0.051 0.949
29 H 0.067 0.933
30 H 0.058 0.942
31 H 0.062 0.938
32 H 0.266 0.734
33 H 0.421 0.579
34 H 0.205 0.795
35 H 0.211 0.789
36 H 0.439 0.561
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.511 10.082 -0.983 13.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.163 4.163
3 C 0.141 3.859
4 H 0.062 0.938
5 C -0.557 4.557
6 H 0.063 0.937
7 C -0.171 4.171
8 N -0.570 5.570
9 Si 0.708 3.292
10 H -0.181 1.181
11 H -0.207 1.207
12 H -0.151 1.151
13 N -0.838 5.838
14 S 2.798 3.202
15 O -0.957 6.957
16 O -0.961 6.961
17 C -0.773 4.773
18 C -0.008 4.008
19 C -0.151 4.151
20 C 0.031 3.969
21 Cl 0.036 6.964
22 N -0.176 5.176
23 C 0.064 3.936
24 C 0.370 3.630
25 O -0.370 6.370
26 O -0.294 6.294
27 H 0.068 0.932
28 H 0.070 0.930
29 H 0.086 0.914
30 H 0.076 0.924
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.258 0.742
34 H 0.222 0.778
35 H 0.228 0.772
36 H 0.302 0.698
Dipole moment (debyes) X Y Z Total
from point charges -8.643 10.584 -0.860 13.692
hybrid contribution 0.996 -0.089 -0.463 1.102
sum -7.647 10.495 -1.323 13.053
Atomic orbital electron populations
1.21841 0.95403 1.01736 1.01754 1.21924 0.95369 0.97176 1.01802
1.18909 0.92898 0.91524 0.82616 0.93789 1.21368 0.90842 1.50090
0.93419 0.93748 1.25669 0.95379 0.94481 1.01608 1.70035 1.10292
1.49797 1.26917 0.86610 0.81687 0.80548 0.80367 1.18113 1.20741
1.15078 1.55370 1.69753 1.43078 1.15560 1.01427 0.73114 0.72920
0.72756 1.93554 1.50745 1.82618 1.68782 1.93545 1.85597 1.81236
1.35755 1.32439 1.11040 1.22258 1.11573 1.22009 0.99497 0.90322
0.89021 1.22762 0.92572 0.96829 1.02983 1.22387 0.91632 0.92197
0.90707 1.98435 1.72119 1.48938 1.76880 1.66968 1.31961 1.09382
1.09240 1.19393 0.89943 0.91975 0.92313 1.20284 0.78811 0.80234
0.83629 1.90845 1.56286 1.26434 1.63425 1.84550 1.42602 1.60100
1.42149 0.93223 0.93024 0.91441 0.92377 0.91921 0.92526 0.74181
0.77777 0.77236 0.69830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.89 9.40 71.98 0.68 -4.22 16
2 C -0.12 -4.68 5.61 30.59 0.17 -4.51 16
3 C 0.25 10.50 2.00 44.25 0.09 10.58 16
4 H 0.04 1.85 4.73 -2.39 -0.01 1.84 16
5 C -0.52 -26.68 9.16 25.60 0.23 -26.45 16
6 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16
7 C 0.03 1.53 5.47 84.66 0.46 1.99 16
8 N -0.93 -54.44 13.96 21.45 0.30 -54.15 16
9 Si 0.89 38.82 27.19 68.60 1.87 40.68 16
10 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16
11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
12 H -0.23 -9.03 6.58 99.48 0.65 -8.37 16
13 N -1.07 -41.80 3.31 -172.50 -0.57 -42.37 16
14 S 2.71 99.30 4.75 -56.49 -0.27 99.03 16
15 O -0.97 -34.73 16.08 -128.00 -2.06 -36.78 16
16 O -0.97 -38.69 15.42 -118.45 -1.83 -40.51 16
17 C -0.69 -23.76 5.89 22.62 0.13 -23.63 16
18 C 0.02 0.46 9.66 22.44 0.22 0.68 16
19 C -0.13 -3.05 9.88 22.47 0.22 -2.83 16
20 C 0.20 5.70 7.27 84.86 0.62 6.32 16
21 Cl 0.01 0.18 29.11 -2.72 -0.08 0.10 16
22 N -0.46 -16.31 10.10 -175.88 -1.78 -18.09 16
23 C 0.20 7.55 6.75 41.85 0.28 7.83 16
24 C 0.53 19.49 8.17 70.43 0.58 20.07 16
25 O -0.48 -18.57 10.53 27.85 0.29 -18.28 16
26 O -0.48 -14.52 13.25 -55.86 -0.74 -15.26 16
27 H 0.05 1.60 7.36 -2.39 -0.02 1.58 16
28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16
30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16
31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16
32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16
33 H 0.42 15.91 7.69 -96.75 -0.74 15.16 16
34 H 0.21 4.06 7.45 -2.91 -0.02 4.04 16
35 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16
36 H 0.44 8.30 9.11 -74.05 -0.67 7.63 16
Total: -1.00 -70.68 337.10 -1.48 -72.16
By element:
Atomic # 1 Polarization: 27.92 SS G_CDS: -0.30 Total: 27.62 kcal
Atomic # 6 Polarization: -17.85 SS G_CDS: 3.68 Total: -14.17 kcal
Atomic # 7 Polarization: -112.55 SS G_CDS: -2.05 Total: -114.60 kcal
Atomic # 8 Polarization: -106.50 SS G_CDS: -4.33 Total: -110.83 kcal
Atomic # 14 Polarization: 38.82 SS G_CDS: 1.87 Total: 40.68 kcal
Atomic # 16 Polarization: 99.30 SS G_CDS: -0.27 Total: 99.03 kcal
Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.10 kcal
Total: -70.68 -1.48 -72.16 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001609912059.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.804 kcal
(2) G-P(sol) polarization free energy of solvation -70.684 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.488 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds