Wall clock time and date at job start Wed Apr 1 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 H 1.09004 * 109.47413 * 54.73806 * 3 2 1 5 5 C 1.50701 * 109.47357 * 174.74524 * 3 2 1 6 6 H 1.07997 * 120.00247 * 119.99957 * 5 3 2 7 7 C 1.37884 * 119.99519 * 300.00090 * 5 3 2 8 8 N 1.31514 * 119.99737 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99842 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46942 * 59.99880 * 9 7 5 11 11 H 1.48500 * 109.47034 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47035 * 299.99802 * 9 7 5 13 13 N 1.46508 * 109.47041 * 294.74384 * 3 2 1 14 14 S 1.65600 * 120.00097 * 107.06734 * 13 3 2 15 15 O 1.42104 * 106.39768 * 308.28358 * 14 13 3 16 16 O 1.42097 * 106.40201 * 175.36408 * 14 13 3 17 17 C 1.76193 * 107.22117 * 61.81977 * 14 13 3 18 18 C 1.38670 * 120.46032 * 241.94131 * 17 14 13 19 19 C 1.38520 * 118.51082 * 180.28474 * 18 17 14 20 20 C 1.38799 * 119.34416 * 359.73000 * 19 18 17 21 21 Cl 1.73599 * 119.56336 * 179.97438 * 20 19 18 22 22 N 1.31579 * 120.87045 * 0.02562 * 20 19 18 23 23 C 1.32804 * 121.62310 * 0.02562 * 22 20 19 24 24 C 1.48060 * 119.71937 * 179.97438 * 23 22 20 25 25 O 1.21432 * 120.00226 * 177.91118 * 24 23 22 26 26 O 1.34685 * 119.99689 * 357.63889 * 24 23 22 27 27 H 1.09001 * 109.47120 * 183.65220 * 1 2 3 28 28 H 1.08999 * 109.47350 * 303.65523 * 1 2 3 29 29 H 1.09005 * 109.47185 * 63.66053 * 1 2 3 30 30 H 1.09006 * 109.47232 * 240.00353 * 2 1 3 31 31 H 1.08998 * 109.47530 * 119.99999 * 2 1 3 32 32 H 0.97003 * 119.99333 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99815 * 287.05560 * 13 3 2 34 34 H 1.07998 * 120.74482 * 0.02562 * 18 17 14 35 35 H 1.07999 * 120.32772 * 179.70981 * 19 18 17 36 36 H 0.96698 * 116.99824 * 0.26975 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4446 0.1301 6 1 4.1499 1.8880 -0.6441 7 6 4.1380 0.8803 1.2377 8 7 3.3968 0.3408 2.1807 9 14 5.9990 0.8834 1.3994 10 1 6.4934 2.2837 1.3998 11 1 6.3864 0.2218 2.6712 12 1 6.5964 0.1478 0.2562 13 7 1.6576 2.0956 -1.2545 14 16 0.4553 3.2344 -1.2622 15 8 -0.6605 2.6441 -0.6095 16 8 0.3988 3.7492 -2.5854 17 6 0.9879 4.5623 -0.2340 18 6 0.2733 4.8992 0.9057 19 6 0.7249 5.9540 1.6816 20 6 1.8737 6.6344 1.3023 21 17 2.4445 7.9577 2.2702 22 7 2.5353 6.2902 0.2182 23 6 2.1346 5.2858 -0.5526 24 6 2.9109 4.9349 -1.7635 25 8 2.5708 3.9936 -2.4512 26 8 3.9912 5.6630 -2.1053 27 1 -0.3633 -1.0256 0.0655 28 1 -0.3634 0.5695 0.8554 29 1 -0.3634 0.4560 -0.9210 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8167 -0.0559 2.9600 33 1 2.1089 1.8612 -2.0805 34 1 -0.6178 4.3541 1.1798 35 1 0.1883 6.2444 2.5727 36 1 4.2229 6.4026 -1.5270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609912100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:57 Heat of formation + Delta-G solvation = -116.244018 kcal Electronic energy + Delta-G solvation = -27811.914334 eV Core-core repulsion = 23643.128911 eV Total energy + Delta-G solvation = -4168.785423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06473 -39.36363 -37.08989 -36.97189 -36.47252 -35.70182 -35.31874 -33.18492 -32.24406 -31.78748 -30.43371 -26.66860 -25.72013 -24.33746 -23.01832 -22.21574 -20.08006 -19.64250 -19.10188 -17.89155 -17.39500 -16.97304 -16.44911 -16.10359 -15.94976 -15.77709 -15.20793 -14.66812 -14.59368 -14.29287 -13.80930 -13.62195 -13.53030 -12.98473 -12.87918 -12.24105 -11.84098 -11.78401 -11.72102 -11.68528 -11.49059 -11.41520 -11.26740 -11.23757 -10.87335 -10.80086 -10.62882 -10.51648 -10.25513 -10.13347 -9.99754 -9.64536 -9.60165 -9.39856 -8.57173 -8.20485 -6.17820 -4.26360 -0.14665 0.48153 0.92478 1.27711 2.21029 2.92958 3.18793 3.21887 3.27114 3.30232 3.60147 3.72625 4.12090 4.30083 4.32527 4.36771 4.53202 4.84700 5.12104 5.20635 5.23293 5.48335 5.83910 6.27034 6.40057 6.44032 6.70575 6.74589 6.95923 7.15866 7.17042 7.28598 7.50455 7.60406 7.69395 7.95428 8.00256 8.29142 8.78956 9.40671 10.86402 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.009087 B = 0.006003 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.683400 B = 4663.457418 C = 5742.992952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.279 3.721 4 H 0.037 0.963 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -1.080 6.080 14 S 2.698 3.302 15 O -0.959 6.959 16 O -0.955 6.955 17 C -0.662 4.662 18 C 0.031 3.969 19 C -0.145 4.145 20 C 0.216 3.784 21 Cl -0.013 7.013 22 N -0.471 5.471 23 C 0.165 3.835 24 C 0.544 3.456 25 O -0.410 6.410 26 O -0.482 6.482 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.102 0.898 32 H 0.265 0.735 33 H 0.418 0.582 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 12.454 0.697 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.175 3.825 4 H 0.055 0.945 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.844 5.844 14 S 2.779 3.221 15 O -0.948 6.948 16 O -0.945 6.945 17 C -0.744 4.744 18 C 0.005 3.995 19 C -0.167 4.167 20 C 0.050 3.950 21 Cl 0.016 6.984 22 N -0.186 5.186 23 C 0.026 3.974 24 C 0.380 3.620 25 O -0.290 6.290 26 O -0.291 6.291 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.254 0.746 34 H 0.193 0.807 35 H 0.181 0.819 36 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.536 12.147 -0.314 12.970 hybrid contribution 1.313 0.586 1.386 1.997 sum -3.223 12.732 1.072 13.178 Atomic orbital electron populations 1.21881 0.98089 0.99018 1.01397 1.21947 0.92718 0.99444 1.02916 1.18577 0.95178 0.90087 0.78706 0.94498 1.21378 0.91069 1.38596 1.05743 0.91807 1.24912 0.98360 0.94834 0.95589 1.69857 1.35113 1.37945 1.09399 0.86612 0.85312 0.78351 0.77525 1.20327 1.21155 1.19956 1.55450 1.57243 1.53068 1.18616 1.02092 0.73936 0.73151 0.72946 1.93598 1.49054 1.74891 1.77290 1.93584 1.86710 1.79898 1.34317 1.32734 1.05212 1.22048 1.14439 1.21548 0.97325 0.91915 0.88696 1.22203 0.96107 0.96316 1.02028 1.21801 0.91323 0.91087 0.90783 1.98439 1.89207 1.43888 1.66847 1.66721 1.31649 1.15131 1.05100 1.21036 0.91888 0.90406 0.94080 1.19714 0.78632 0.81912 0.81783 1.90916 1.63238 1.23948 1.50914 1.84492 1.43721 1.45503 1.55398 0.95084 0.93143 0.93757 0.94144 0.88024 0.92525 0.74577 0.80730 0.81935 0.71816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.28 6.43 2.22 -69.08 -0.15 6.28 16 4 H 0.04 0.89 7.77 -51.93 -0.40 0.49 16 5 C -0.53 -13.36 8.83 -34.44 -0.30 -13.67 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -23.34 11.29 55.43 0.63 -22.71 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -1.08 -22.05 3.64 -5.88 -0.02 -22.07 16 14 S 2.70 50.81 4.71 -107.50 -0.51 50.31 16 15 O -0.96 -18.53 13.79 -57.17 -0.79 -19.32 16 16 O -0.96 -19.58 15.22 -67.27 -1.02 -20.60 16 17 C -0.66 -11.05 5.73 -39.04 -0.22 -11.27 16 18 C 0.03 0.42 9.66 -39.32 -0.38 0.05 16 19 C -0.15 -1.66 9.88 -39.27 -0.39 -2.05 16 20 C 0.22 2.74 7.27 -17.45 -0.13 2.62 16 21 Cl -0.01 -0.13 29.11 -51.86 -1.51 -1.64 16 22 N -0.47 -6.75 9.41 -6.94 -0.07 -6.81 16 23 C 0.17 2.72 6.74 -83.03 -0.56 2.16 16 24 C 0.54 9.44 8.29 34.76 0.29 9.73 16 25 O -0.41 -8.13 10.64 -27.46 -0.29 -8.42 16 26 O -0.48 -6.90 13.48 -40.45 -0.55 -7.45 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 29 H 0.04 0.88 6.34 -51.93 -0.33 0.55 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.42 8.32 7.86 -34.47 -0.27 8.05 16 34 H 0.18 1.98 7.45 -52.49 -0.39 1.59 16 35 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.42 4.14 8.22 45.56 0.37 4.51 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -31.01 331.98 -8.47 -39.48 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -2.55 Total: 9.28 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.77 Total: -10.35 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.54 Total: -51.60 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -2.65 Total: -55.79 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.51 Total: 50.31 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.01 -8.47 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.765 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds