Wall clock time and date at job start Wed Apr 1 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 H 1.09004 * 109.47413 * 54.73806 * 3 2 1 5 5 C 1.50701 * 109.47357 * 174.74524 * 3 2 1 6 6 H 1.07997 * 120.00247 * 119.99957 * 5 3 2 7 7 C 1.37884 * 119.99519 * 300.00090 * 5 3 2 8 8 N 1.31514 * 119.99737 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99842 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46942 * 59.99880 * 9 7 5 11 11 H 1.48500 * 109.47034 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47035 * 299.99802 * 9 7 5 13 13 N 1.46508 * 109.47041 * 294.74384 * 3 2 1 14 14 S 1.65600 * 120.00097 * 107.06734 * 13 3 2 15 15 O 1.42104 * 106.39768 * 308.28358 * 14 13 3 16 16 O 1.42097 * 106.40201 * 175.36408 * 14 13 3 17 17 C 1.76193 * 107.22117 * 61.81977 * 14 13 3 18 18 C 1.38670 * 120.46032 * 241.94131 * 17 14 13 19 19 C 1.38520 * 118.51082 * 180.28474 * 18 17 14 20 20 C 1.38799 * 119.34416 * 359.73000 * 19 18 17 21 21 Cl 1.73599 * 119.56336 * 179.97438 * 20 19 18 22 22 N 1.31579 * 120.87045 * 0.02562 * 20 19 18 23 23 C 1.32804 * 121.62310 * 0.02562 * 22 20 19 24 24 C 1.48060 * 119.71937 * 179.97438 * 23 22 20 25 25 O 1.21432 * 120.00226 * 177.91118 * 24 23 22 26 26 O 1.34685 * 119.99689 * 357.63889 * 24 23 22 27 27 H 1.09001 * 109.47120 * 183.65220 * 1 2 3 28 28 H 1.08999 * 109.47350 * 303.65523 * 1 2 3 29 29 H 1.09005 * 109.47185 * 63.66053 * 1 2 3 30 30 H 1.09006 * 109.47232 * 240.00353 * 2 1 3 31 31 H 1.08998 * 109.47530 * 119.99999 * 2 1 3 32 32 H 0.97003 * 119.99333 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99815 * 287.05560 * 13 3 2 34 34 H 1.07998 * 120.74482 * 0.02562 * 18 17 14 35 35 H 1.07999 * 120.32772 * 179.70981 * 19 18 17 36 36 H 0.96698 * 116.99824 * 0.26975 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4446 0.1301 6 1 4.1499 1.8880 -0.6441 7 6 4.1380 0.8803 1.2377 8 7 3.3968 0.3408 2.1807 9 14 5.9990 0.8834 1.3994 10 1 6.4934 2.2837 1.3998 11 1 6.3864 0.2218 2.6712 12 1 6.5964 0.1478 0.2562 13 7 1.6576 2.0956 -1.2545 14 16 0.4553 3.2344 -1.2622 15 8 -0.6605 2.6441 -0.6095 16 8 0.3988 3.7492 -2.5854 17 6 0.9879 4.5623 -0.2340 18 6 0.2733 4.8992 0.9057 19 6 0.7249 5.9540 1.6816 20 6 1.8737 6.6344 1.3023 21 17 2.4445 7.9577 2.2702 22 7 2.5353 6.2902 0.2182 23 6 2.1346 5.2858 -0.5526 24 6 2.9109 4.9349 -1.7635 25 8 2.5708 3.9936 -2.4512 26 8 3.9912 5.6630 -2.1053 27 1 -0.3633 -1.0256 0.0655 28 1 -0.3634 0.5695 0.8554 29 1 -0.3634 0.4560 -0.9210 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8167 -0.0559 2.9600 33 1 2.1089 1.8612 -2.0805 34 1 -0.6178 4.3541 1.1798 35 1 0.1883 6.2444 2.5727 36 1 4.2229 6.4026 -1.5270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609912100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:57 Heat of formation + Delta-G solvation = -138.697508 kcal Electronic energy + Delta-G solvation = -27812.887990 eV Core-core repulsion = 23643.128911 eV Total energy + Delta-G solvation = -4169.759080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.22712 -40.57318 -38.40550 -38.02895 -37.94437 -37.32847 -36.84631 -34.28143 -34.12492 -32.91138 -32.12019 -28.53232 -26.88407 -25.44405 -24.84060 -23.44740 -21.84699 -20.88928 -20.45962 -19.28202 -18.79656 -18.39076 -17.96103 -17.47079 -17.16491 -17.05458 -16.89090 -16.25908 -15.70359 -15.50188 -15.40976 -15.00211 -14.76934 -14.65009 -14.39009 -13.51103 -13.45471 -13.23821 -13.12451 -13.07734 -13.04905 -12.78728 -12.71456 -12.61906 -12.60059 -12.49643 -12.08942 -11.93068 -11.75374 -11.60855 -11.43795 -11.28936 -11.21545 -10.67211 -10.50371 -9.92879 -8.12754 -6.26179 -1.31029 -0.60793 -0.48543 0.28602 1.01643 1.40789 1.43525 1.49625 1.72317 1.98140 2.15582 2.43667 2.61043 2.75303 3.14238 3.15440 3.31771 3.44704 3.88117 3.93004 4.18131 4.37805 4.50626 4.70939 4.72370 4.85238 4.98266 5.21032 5.44376 5.54207 5.58590 5.68481 5.84180 5.95747 6.11752 6.17949 6.39782 6.56072 6.84576 7.42889 8.90243 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.009087 B = 0.006003 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.683400 B = 4663.457418 C = 5742.992952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.027 3.973 8 N -0.905 5.905 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.275 1.275 13 N -1.084 6.084 14 S 2.712 3.288 15 O -0.969 6.969 16 O -0.976 6.976 17 C -0.683 4.683 18 C 0.024 3.976 19 C -0.125 4.125 20 C 0.205 3.795 21 Cl 0.015 6.985 22 N -0.469 5.469 23 C 0.150 3.850 24 C 0.540 3.460 25 O -0.445 6.445 26 O -0.478 6.478 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.265 0.735 33 H 0.417 0.583 34 H 0.195 0.805 35 H 0.209 0.791 36 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 13.911 2.147 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.174 4.174 8 N -0.543 5.543 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.847 5.847 14 S 2.797 3.203 15 O -0.959 6.959 16 O -0.966 6.966 17 C -0.769 4.769 18 C -0.001 4.001 19 C -0.146 4.146 20 C 0.040 3.960 21 Cl 0.044 6.956 22 N -0.185 5.185 23 C 0.011 3.989 24 C 0.377 3.623 25 O -0.328 6.328 26 O -0.289 6.289 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.212 0.788 35 H 0.226 0.774 36 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -4.633 13.609 1.127 14.420 hybrid contribution 1.361 0.312 1.023 1.731 sum -3.272 13.921 2.150 14.461 Atomic orbital electron populations 1.21796 0.96331 1.00230 1.01308 1.21852 0.94295 0.99036 1.01674 1.18314 0.93986 0.90254 0.79362 0.95608 1.21592 0.92354 1.38333 1.05527 0.92654 1.25501 1.01622 0.94749 0.95499 1.69951 1.36255 1.38450 1.09676 0.85822 0.81416 0.78268 0.77414 1.20084 1.20698 1.20042 1.55342 1.57427 1.54189 1.17694 1.01351 0.73229 0.72999 0.72692 1.93573 1.49451 1.75518 1.77312 1.93554 1.86883 1.80154 1.36000 1.32369 1.06593 1.22056 1.15869 1.21933 0.97708 0.92698 0.87805 1.22703 0.95169 0.94334 1.02401 1.22263 0.91648 0.91690 0.90443 1.98455 1.88978 1.42436 1.65780 1.66733 1.31793 1.14417 1.05527 1.20858 0.92112 0.91558 0.94421 1.19968 0.78883 0.81605 0.81829 1.90883 1.64330 1.25484 1.52082 1.84450 1.42651 1.45932 1.55913 0.93193 0.93538 0.93498 0.94316 0.90231 0.92525 0.74679 0.78758 0.77446 0.69735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 8.52 71.98 0.61 -5.02 16 2 C -0.13 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.29 13.35 2.22 44.24 0.10 13.45 16 4 H 0.03 1.27 7.77 -2.39 -0.02 1.25 16 5 C -0.54 -27.50 8.83 25.60 0.23 -27.28 16 6 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.03 1.40 5.29 84.66 0.45 1.85 16 8 N -0.90 -47.73 11.29 21.45 0.24 -47.49 16 9 Si 0.94 41.43 29.54 68.60 2.03 43.46 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 N -1.08 -45.15 3.64 -172.50 -0.63 -45.77 16 14 S 2.71 102.93 4.71 -56.49 -0.27 102.66 16 15 O -0.97 -37.16 13.79 -128.00 -1.77 -38.93 16 16 O -0.98 -40.77 15.22 -118.34 -1.80 -42.57 16 17 C -0.68 -22.36 5.73 22.62 0.13 -22.23 16 18 C 0.02 0.61 9.66 22.44 0.22 0.83 16 19 C -0.13 -2.45 9.88 22.47 0.22 -2.22 16 20 C 0.21 4.65 7.27 84.87 0.62 5.27 16 21 Cl 0.01 0.26 29.11 -2.72 -0.08 0.18 16 22 N -0.47 -12.69 9.41 -175.89 -1.65 -14.34 16 23 C 0.15 4.85 6.74 41.85 0.28 5.13 16 24 C 0.54 18.90 8.29 70.43 0.58 19.48 16 25 O -0.44 -18.12 10.64 27.94 0.30 -17.82 16 26 O -0.48 -13.55 13.48 -55.95 -0.75 -14.31 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.89 7.89 -2.39 -0.02 1.87 16 29 H 0.05 1.85 6.34 -2.38 -0.02 1.84 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.08 4.02 5.95 -2.39 -0.01 4.01 16 32 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 33 H 0.42 17.22 7.86 -96.74 -0.76 16.46 16 34 H 0.20 3.96 7.45 -2.91 -0.02 3.94 16 35 H 0.21 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.44 8.22 8.22 -74.06 -0.61 7.61 16 Total: -1.00 -66.32 331.98 -0.97 -67.29 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.19 Total: 24.12 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.60 Total: -16.47 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -2.04 Total: -107.61 kcal Atomic # 8 Polarization: -109.60 SS G_CDS: -4.02 Total: -113.62 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 102.93 SS G_CDS: -0.27 Total: 102.66 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -0.08 Total: 0.18 kcal Total: -66.32 -0.97 -67.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.411 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds