Wall clock time and date at job start Wed Apr 1 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86806 * 119.99896 * 2 1 4 4 H 1.48507 * 109.47064 * 240.00285 * 3 2 1 5 5 H 1.48503 * 109.46802 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47194 * 120.00069 * 3 2 1 7 7 C 1.39038 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36875 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00307 * 179.97438 * 9 7 2 11 11 O 1.21600 * 120.00371 * 0.02562 * 10 9 7 12 12 C 1.47667 * 120.00094 * 180.02562 * 10 9 7 13 13 C 1.40075 * 120.56546 * 0.02562 * 12 10 9 14 14 C 1.38418 * 118.28447 * 179.97438 * 13 12 10 15 15 Br 1.89104 * 120.34192 * 179.97438 * 14 13 12 16 16 C 1.38465 * 119.32025 * 0.02562 * 14 13 12 17 17 N 1.31920 * 121.09836 * 359.97438 * 16 14 13 18 18 C 1.31777 * 121.88169 * 0.02562 * 17 16 14 19 19 Br 1.89098 * 119.72479 * 179.97438 * 18 17 16 20 20 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99701 * 0.02562 * 9 7 2 22 22 H 1.08000 * 120.85962 * 359.97438 * 13 12 10 23 23 H 1.08001 * 119.44680 * 179.72218 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1014 1.6965 -1.2126 5 1 1.2825 2.7465 0.0006 6 1 3.1014 1.6965 1.2124 7 6 2.0088 -1.2041 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3246 -2.3895 -0.0005 10 6 1.9985 -3.5566 -0.0016 11 8 3.2145 -3.5567 -0.0021 12 6 1.2602 -4.8355 -0.0022 13 6 -0.1405 -4.8494 -0.0022 14 6 -0.7843 -6.0748 -0.0033 15 35 -2.6733 -6.1614 -0.0026 16 6 -0.0309 -7.2365 -0.0038 17 7 1.2876 -7.1936 -0.0037 18 6 1.9469 -6.0525 -0.0027 19 35 3.8378 -6.0622 -0.0020 20 1 -0.4850 0.8400 0.0004 21 1 0.3546 -2.3896 -0.0005 22 1 -0.7036 -3.9278 -0.0013 23 1 -0.5310 -8.1937 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113595.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:26 Heat of formation + Delta-G solvation = 16.360322 kcal Electronic energy + Delta-G solvation = -14365.661703 eV Core-core repulsion = 11500.061169 eV Total energy + Delta-G solvation = -2865.600535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 347.885 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.24984 -37.97162 -34.35762 -33.33629 -32.25710 -31.41448 -30.64225 -28.67943 -25.69105 -24.08047 -22.68897 -19.93045 -18.43556 -17.11207 -16.70013 -15.89293 -14.94444 -14.66679 -14.20026 -13.96510 -13.37605 -13.25651 -12.98114 -12.03622 -11.82719 -11.67389 -11.25770 -10.66042 -10.59422 -10.46843 -10.27529 -10.08466 -9.84759 -9.74327 -9.55627 -8.64240 -8.25220 -7.96376 -6.76534 -4.03677 0.58650 0.98907 1.36804 1.81927 3.03692 3.11970 3.15596 3.30195 3.91386 4.15065 4.35085 4.60254 4.74115 4.96824 5.08794 5.12462 5.68098 5.72780 6.08480 6.29015 7.23990 7.60181 7.75561 8.28871 8.86086 9.17972 9.76609 10.39005 Molecular weight = 347.88amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.005852 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.809129 B = 4783.351863 C = 7642.319063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.284 4.284 8 H 0.114 0.886 9 N -0.531 5.531 10 C 0.451 3.549 11 O -0.563 6.563 12 C -0.108 4.108 13 C -0.035 4.035 14 C -0.135 4.135 15 Br -0.033 7.033 16 C 0.125 3.875 17 N -0.454 5.454 18 C 0.158 3.842 19 Br 0.036 6.964 20 H 0.280 0.720 21 H 0.391 0.609 22 H 0.154 0.846 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -11.823 0.000 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.414 4.414 8 H 0.131 0.869 9 N -0.165 5.165 10 C 0.238 3.762 11 O -0.448 6.448 12 C -0.118 4.118 13 C -0.065 4.065 14 C -0.217 4.217 15 Br 0.051 6.949 16 C -0.037 4.037 17 N -0.164 5.164 18 C -0.061 4.061 19 Br 0.121 6.879 20 H 0.090 0.910 21 H 0.226 0.774 22 H 0.172 0.828 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.670 -12.409 0.000 12.940 hybrid contribution -0.955 1.566 0.000 1.834 sum -4.625 -10.843 0.000 11.788 Atomic orbital electron populations 1.69573 1.06289 1.29420 1.46418 1.25481 0.95757 1.00441 0.96410 0.85769 0.78858 0.79362 0.79550 1.19398 1.20622 1.19406 1.19918 0.94029 0.81785 1.45663 0.86852 1.41975 1.09446 1.04817 1.60261 1.17222 0.87803 0.82587 0.88559 1.90806 1.11758 1.85514 1.56732 1.21121 0.93073 0.96683 1.00931 1.21836 0.93323 0.97659 0.93636 1.22868 0.92066 0.97141 1.09637 1.96729 1.01450 1.99018 1.97659 1.22788 0.88510 0.97213 0.95187 1.67615 1.08679 1.27853 1.12277 1.23076 0.94841 0.89358 0.98863 1.96795 0.95913 1.98681 1.96483 0.90965 0.77389 0.82805 0.81395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.94 13.05 55.50 0.72 -21.21 14 2 C 0.02 0.59 5.50 -17.46 -0.10 0.50 14 3 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 14 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 14 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 14 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 14 7 C -0.28 -7.34 9.68 -15.00 -0.15 -7.49 14 8 H 0.11 3.03 7.15 -52.48 -0.38 2.66 14 9 N -0.53 -12.76 5.23 -11.89 -0.06 -12.82 14 10 C 0.45 10.49 7.71 -12.41 -0.10 10.39 14 11 O -0.56 -14.32 13.08 5.28 0.07 -14.25 14 12 C -0.11 -2.13 5.89 -104.80 -0.62 -2.74 14 13 C -0.04 -0.58 9.41 -38.83 -0.37 -0.95 14 14 C -0.13 -1.93 6.24 -39.43 -0.25 -2.18 14 15 Br -0.03 -0.39 33.73 -68.01 -2.29 -2.69 14 16 C 0.12 1.75 10.93 -17.43 -0.19 1.56 14 17 N -0.45 -7.60 10.31 -11.25 -0.12 -7.72 14 18 C 0.16 2.98 7.21 -17.02 -0.12 2.85 14 19 Br 0.04 0.68 30.58 -68.01 -2.08 -1.40 14 20 H 0.28 6.59 8.31 -40.82 -0.34 6.25 14 21 H 0.39 8.89 6.00 -40.82 -0.24 8.64 14 22 H 0.15 2.47 6.52 -52.49 -0.34 2.13 14 23 H 0.17 1.77 8.06 -52.49 -0.42 1.35 14 LS Contribution 255.46 15.07 3.85 3.85 Total: -1.00 -27.12 255.46 -7.33 -34.45 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -0.52 Total: 5.46 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.88 Total: 1.94 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.55 Total: -41.75 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -4.37 Total: -4.09 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.12 -7.33 -34.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113595.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.810 kcal (2) G-P(sol) polarization free energy of solvation -27.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds