Wall clock time and date at job start Wed Apr 1 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86806 * 119.99896 * 2 1 4 4 H 1.48507 * 109.47064 * 240.00285 * 3 2 1 5 5 H 1.48503 * 109.46802 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47194 * 120.00069 * 3 2 1 7 7 C 1.39038 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36875 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00307 * 179.97438 * 9 7 2 11 11 O 1.21600 * 120.00371 * 0.02562 * 10 9 7 12 12 C 1.47667 * 120.00094 * 180.02562 * 10 9 7 13 13 C 1.40075 * 120.56546 * 0.02562 * 12 10 9 14 14 C 1.38418 * 118.28447 * 179.97438 * 13 12 10 15 15 Br 1.89104 * 120.34192 * 179.97438 * 14 13 12 16 16 C 1.38465 * 119.32025 * 0.02562 * 14 13 12 17 17 N 1.31920 * 121.09836 * 359.97438 * 16 14 13 18 18 C 1.31777 * 121.88169 * 0.02562 * 17 16 14 19 19 Br 1.89098 * 119.72479 * 179.97438 * 18 17 16 20 20 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99701 * 0.02562 * 9 7 2 22 22 H 1.08000 * 120.85962 * 359.97438 * 13 12 10 23 23 H 1.08001 * 119.44680 * 179.72218 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1014 1.6965 -1.2126 5 1 1.2825 2.7465 0.0006 6 1 3.1014 1.6965 1.2124 7 6 2.0088 -1.2041 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3246 -2.3895 -0.0005 10 6 1.9985 -3.5566 -0.0016 11 8 3.2145 -3.5567 -0.0021 12 6 1.2602 -4.8355 -0.0022 13 6 -0.1405 -4.8494 -0.0022 14 6 -0.7843 -6.0748 -0.0033 15 35 -2.6733 -6.1614 -0.0026 16 6 -0.0309 -7.2365 -0.0038 17 7 1.2876 -7.1936 -0.0037 18 6 1.9469 -6.0525 -0.0027 19 35 3.8378 -6.0622 -0.0020 20 1 -0.4850 0.8400 0.0004 21 1 0.3546 -2.3896 -0.0005 22 1 -0.7036 -3.9278 -0.0013 23 1 -0.5310 -8.1937 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113595.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:25 Heat of formation + Delta-G solvation = -0.941619 kcal Electronic energy + Delta-G solvation = -14366.411972 eV Core-core repulsion = 11500.061169 eV Total energy + Delta-G solvation = -2866.350803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 347.885 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.68799 -39.71856 -36.18134 -34.69316 -33.79686 -33.09470 -32.00638 -29.98936 -27.44480 -25.56462 -24.10772 -21.61736 -20.24426 -18.65464 -18.05561 -17.40722 -16.73291 -16.16604 -15.77846 -15.49804 -14.94800 -14.90628 -14.42496 -13.59533 -13.43848 -12.98619 -12.87039 -12.49434 -12.16262 -11.78829 -11.69868 -11.54907 -11.48684 -11.05680 -11.02974 -10.14404 -9.92222 -9.70722 -8.58156 -5.99306 -0.77567 -0.36674 0.13487 0.44456 1.41164 1.43907 1.54136 1.83870 2.23532 2.48174 2.78498 3.22282 3.27005 3.45351 3.55528 3.68186 4.28386 4.31352 4.58808 4.97609 5.34640 5.86045 6.28311 6.45418 6.99898 7.36211 7.93754 8.58063 Molecular weight = 347.88amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.005852 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.809129 B = 4783.351863 C = 7642.319063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.007 4.007 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.326 4.326 8 H 0.092 0.908 9 N -0.543 5.543 10 C 0.456 3.544 11 O -0.588 6.588 12 C -0.135 4.135 13 C -0.025 4.025 14 C -0.133 4.133 15 Br 0.003 6.997 16 C 0.151 3.849 17 N -0.461 5.461 18 C 0.153 3.847 19 Br 0.028 6.972 20 H 0.284 0.716 21 H 0.395 0.605 22 H 0.158 0.842 23 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 -13.272 -0.001 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.110 0.890 9 N -0.178 5.178 10 C 0.243 3.757 11 O -0.474 6.474 12 C -0.144 4.144 13 C -0.054 4.054 14 C -0.215 4.215 15 Br 0.088 6.912 16 C -0.011 4.011 17 N -0.171 5.171 18 C -0.065 4.065 19 Br 0.113 6.887 20 H 0.094 0.906 21 H 0.230 0.770 22 H 0.175 0.825 23 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.352 -13.885 0.000 14.881 hybrid contribution -0.596 1.661 -0.001 1.765 sum -5.948 -12.224 -0.001 13.594 Atomic orbital electron populations 1.69619 1.07021 1.30163 1.47542 1.26159 0.96554 1.02665 0.95505 0.84918 0.77818 0.76058 0.79211 1.19449 1.19383 1.19458 1.19814 0.93381 0.83214 1.49169 0.89011 1.41891 1.09468 1.04646 1.61815 1.17791 0.87765 0.83587 0.86517 1.90769 1.13216 1.86441 1.57004 1.20831 0.94301 0.95064 1.04182 1.21913 0.92173 0.99047 0.92271 1.23039 0.94145 0.96187 1.08132 1.96794 0.98044 1.98911 1.97447 1.23600 0.87547 0.98876 0.91095 1.67723 1.09968 1.26559 1.12864 1.23101 0.94817 0.89758 0.98857 1.96779 0.96746 1.98691 1.96477 0.90642 0.76974 0.82454 0.76968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.69 13.05 21.68 0.28 -45.41 14 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 14 3 Si 1.00 40.32 29.55 68.60 2.03 42.35 14 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 14 5 H -0.27 -10.26 7.11 99.48 0.71 -9.56 14 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 14 7 C -0.33 -17.50 9.68 84.10 0.81 -16.69 14 8 H 0.09 5.18 7.15 -2.91 -0.02 5.16 14 9 N -0.54 -26.90 5.23 -309.79 -1.62 -28.52 14 10 C 0.46 21.70 7.71 86.74 0.67 22.37 14 11 O -0.59 -30.82 13.08 -4.03 -0.05 -30.87 14 12 C -0.13 -5.22 5.89 -19.98 -0.12 -5.34 14 13 C -0.02 -0.79 9.41 22.76 0.21 -0.57 14 14 C -0.13 -3.37 6.24 22.37 0.14 -3.23 14 15 Br 0.00 0.07 33.73 -20.37 -0.69 -0.62 14 16 C 0.15 3.61 10.93 84.73 0.93 4.54 14 17 N -0.46 -14.21 10.31 -189.51 -1.95 -16.17 14 18 C 0.15 5.60 7.21 85.06 0.61 6.21 14 19 Br 0.03 1.04 30.58 -20.37 -0.62 0.42 14 20 H 0.28 13.39 8.31 -92.71 -0.77 12.62 14 21 H 0.40 18.39 6.00 -92.71 -0.56 17.84 14 22 H 0.16 4.89 6.52 -2.91 -0.02 4.87 14 23 H 0.21 3.23 8.06 -2.91 -0.02 3.21 14 Total: -1.00 -59.30 255.46 1.83 -57.47 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.73 Total: 13.93 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 3.73 Total: 7.43 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.29 Total: -90.10 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.87 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 35 Polarization: 1.11 SS G_CDS: -1.31 Total: -0.20 kcal Total: -59.30 1.83 -57.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113595.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.528 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds