Wall clock time and date at job start Wed Apr 1 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47269 * 240.00283 * 3 2 1 5 5 H 1.48504 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46988 * 119.99722 * 3 2 1 7 7 C 1.37874 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47502 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47305 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.54452 * 68.37585 * 11 10 9 13 13 O 1.42102 * 110.54331 * 291.62527 * 11 10 9 14 14 N 1.65604 * 104.45151 * 180.02562 * 11 10 9 15 15 C 1.46492 * 120.00047 * 64.99453 * 14 11 10 16 16 C 1.50707 * 109.46901 * 165.00334 * 15 14 11 17 17 N 1.31873 * 119.62210 * 269.97762 * 16 15 14 18 18 C 1.31862 * 121.73263 * 179.75122 * 17 16 15 19 19 C 1.38225 * 120.78555 * 0.54233 * 18 17 16 20 20 C 1.38612 * 119.17136 * 359.47274 * 19 18 17 21 21 C 1.38278 * 119.62475 * 90.00636 * 16 15 14 22 22 Br 1.89098 * 120.42815 * 359.95166 * 21 16 15 23 23 H 0.96999 * 120.00045 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47336 * 59.99887 * 9 7 2 25 25 H 1.09005 * 109.47379 * 300.00114 * 9 7 2 26 26 H 1.09005 * 109.47302 * 60.00300 * 10 9 7 27 27 H 1.08998 * 109.47455 * 300.00035 * 10 9 7 28 28 H 0.97004 * 119.99910 * 245.00016 * 14 11 10 29 29 H 1.09002 * 109.46851 * 45.00766 * 15 14 11 30 30 H 1.08996 * 109.47721 * 285.00522 * 15 14 11 31 31 H 1.08000 * 119.60668 * 180.27026 * 18 17 16 32 32 H 1.08002 * 120.41748 * 179.75539 * 19 18 17 33 33 H 1.07998 * 120.79540 * 180.27558 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 16 1.3385 -5.2330 -0.0026 12 8 0.6639 -5.4188 -1.2394 13 8 0.6650 -5.4206 1.2346 14 7 2.5206 -6.3927 -0.0032 15 6 3.4191 -6.5234 1.1464 16 6 4.1392 -7.8453 1.0734 17 7 3.6086 -8.9090 1.6445 18 6 4.2002 -10.0867 1.6020 19 6 5.4142 -10.2459 0.9606 20 6 6.0035 -9.1509 0.3482 21 6 5.3489 -7.9289 0.4089 22 35 6.1011 -6.3979 -0.4073 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8728 -3.6047 0.8878 27 1 2.8714 -3.6039 -0.8922 28 1 2.6182 -6.9854 -0.7649 29 1 2.8391 -6.4761 2.0680 30 1 4.1468 -5.7121 1.1330 31 1 3.7327 -10.9361 2.0779 32 1 5.8954 -11.2124 0.9328 33 1 6.9494 -9.2465 -0.1641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622675370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:47 Heat of formation + Delta-G solvation = -39.709480 kcal Electronic energy + Delta-G solvation = -19855.628697 eV Core-core repulsion = 16475.734375 eV Total energy + Delta-G solvation = -3379.894322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74551 -36.59134 -35.68796 -35.35859 -33.86775 -33.55967 -32.08380 -31.13701 -29.94688 -26.54747 -25.57657 -23.72511 -22.49525 -21.64215 -18.99137 -17.77555 -17.32967 -17.06998 -16.42720 -16.12990 -15.49994 -15.34365 -14.82300 -14.55198 -14.26822 -13.92941 -13.77806 -13.28962 -13.11460 -12.49656 -12.37162 -11.73012 -11.69458 -11.58868 -11.55757 -11.47333 -11.04923 -10.94599 -10.72435 -10.41633 -10.34981 -10.19151 -9.89770 -9.77129 -9.49569 -9.29817 -9.01286 -8.47808 -6.10150 -4.15626 0.33961 0.63012 0.88307 1.16017 2.99903 3.28699 3.33529 3.35100 3.38096 3.73303 4.16907 4.28207 4.28440 4.40222 4.46055 4.75066 4.81343 4.89292 5.16968 5.24955 5.36610 5.41715 5.56308 5.63946 5.69998 5.88006 6.03033 6.51524 7.01671 7.32855 7.39119 7.44636 7.82694 8.19904 8.87528 9.48897 11.00877 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.003527 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.924627 B = 7936.985719 C = 9182.265136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.592 3.408 12 O -0.964 6.964 13 O -0.962 6.962 14 N -1.118 6.118 15 C 0.158 3.842 16 C 0.154 3.846 17 N -0.456 5.456 18 C 0.114 3.886 19 C -0.166 4.166 20 C -0.048 4.048 21 C -0.138 4.138 22 Br -0.019 7.019 23 H 0.265 0.735 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.412 0.588 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.435 -21.161 0.946 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.690 3.310 12 O -0.954 6.954 13 O -0.952 6.952 14 N -0.874 5.874 15 C 0.031 3.969 16 C 0.013 3.987 17 N -0.166 5.166 18 C -0.044 4.044 19 C -0.187 4.187 20 C -0.075 4.075 21 C -0.220 4.220 22 Br 0.066 6.934 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.245 0.755 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.183 0.817 32 H 0.163 0.837 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.776 -20.468 1.256 25.276 hybrid contribution 1.882 0.389 -0.607 2.015 sum 16.658 -20.079 0.649 26.098 Atomic orbital electron populations 1.69948 1.06098 1.27283 1.49532 1.25063 0.94964 0.99495 0.94943 0.86538 0.79497 0.82593 0.78684 1.20111 1.21102 1.20076 1.20963 0.93031 0.89758 1.52178 0.92069 1.18963 0.92688 0.90497 0.98939 1.30447 1.13730 1.17793 1.10254 1.05641 0.74556 0.76559 0.74243 1.93558 1.71298 1.85347 1.45225 1.93549 1.71197 1.84860 1.45567 1.55744 1.52601 1.52588 1.26489 1.20237 0.93538 0.91916 0.91210 1.21159 0.90279 0.95252 0.91999 1.67731 1.33259 0.98775 1.16800 1.23035 0.91900 0.94988 0.94428 1.22259 0.97312 0.99876 0.99236 1.21614 0.99446 0.90631 0.95827 1.22971 0.99048 0.95174 1.04838 1.96840 1.82652 1.34664 1.79227 0.92488 0.94823 0.94755 0.86165 0.85926 0.75489 0.87660 0.89348 0.81696 0.83685 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.32 9.11 -34.45 -0.31 -14.63 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 10 C -0.59 -11.15 6.01 37.16 0.22 -10.93 16 11 S 2.59 46.96 5.46 -107.50 -0.59 46.38 16 12 O -0.96 -20.25 18.08 -57.54 -1.04 -21.29 16 13 O -0.96 -20.25 17.49 -57.54 -1.01 -21.25 16 14 N -1.12 -15.34 5.88 -11.66 -0.07 -15.40 16 15 C 0.16 1.96 5.96 -5.19 -0.03 1.93 16 16 C 0.15 1.74 6.18 -82.56 -0.51 1.23 16 17 N -0.46 -5.20 10.27 -9.45 -0.10 -5.30 16 18 C 0.11 0.90 11.18 -17.54 -0.20 0.70 16 19 C -0.17 -1.00 10.11 -39.45 -0.40 -1.40 16 20 C -0.05 -0.34 9.94 -39.25 -0.39 -0.73 16 21 C -0.14 -1.32 6.24 -39.38 -0.25 -1.56 16 22 Br -0.02 -0.18 31.82 -68.01 -2.16 -2.35 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 27 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 28 H 0.41 5.03 8.61 -34.47 -0.30 4.73 16 29 H 0.11 1.37 7.69 -51.93 -0.40 0.97 16 30 H 0.09 0.96 6.64 -51.93 -0.34 0.62 16 31 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -35.88 324.06 -10.00 -45.88 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.54 Total: 1.31 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.10 Total: -23.27 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.57 Total: -46.50 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -2.05 Total: -42.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -0.59 Total: 46.38 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.16 Total: -2.35 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.88 -10.00 -45.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622675370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.175 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds