Wall clock time and date at job start Wed Apr 1 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47269 * 240.00283 * 3 2 1 5 5 H 1.48504 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46988 * 119.99722 * 3 2 1 7 7 C 1.37874 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47502 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47305 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.54452 * 68.37585 * 11 10 9 13 13 O 1.42102 * 110.54331 * 291.62527 * 11 10 9 14 14 N 1.65604 * 104.45151 * 180.02562 * 11 10 9 15 15 C 1.46492 * 120.00047 * 64.99453 * 14 11 10 16 16 C 1.50707 * 109.46901 * 165.00334 * 15 14 11 17 17 N 1.31873 * 119.62210 * 269.97762 * 16 15 14 18 18 C 1.31862 * 121.73263 * 179.75122 * 17 16 15 19 19 C 1.38225 * 120.78555 * 0.54233 * 18 17 16 20 20 C 1.38612 * 119.17136 * 359.47274 * 19 18 17 21 21 C 1.38278 * 119.62475 * 90.00636 * 16 15 14 22 22 Br 1.89098 * 120.42815 * 359.95166 * 21 16 15 23 23 H 0.96999 * 120.00045 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47336 * 59.99887 * 9 7 2 25 25 H 1.09005 * 109.47379 * 300.00114 * 9 7 2 26 26 H 1.09005 * 109.47302 * 60.00300 * 10 9 7 27 27 H 1.08998 * 109.47455 * 300.00035 * 10 9 7 28 28 H 0.97004 * 119.99910 * 245.00016 * 14 11 10 29 29 H 1.09002 * 109.46851 * 45.00766 * 15 14 11 30 30 H 1.08996 * 109.47721 * 285.00522 * 15 14 11 31 31 H 1.08000 * 119.60668 * 180.27026 * 18 17 16 32 32 H 1.08002 * 120.41748 * 179.75539 * 19 18 17 33 33 H 1.07998 * 120.79540 * 180.27558 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 16 1.3385 -5.2330 -0.0026 12 8 0.6639 -5.4188 -1.2394 13 8 0.6650 -5.4206 1.2346 14 7 2.5206 -6.3927 -0.0032 15 6 3.4191 -6.5234 1.1464 16 6 4.1392 -7.8453 1.0734 17 7 3.6086 -8.9090 1.6445 18 6 4.2002 -10.0867 1.6020 19 6 5.4142 -10.2459 0.9606 20 6 6.0035 -9.1509 0.3482 21 6 5.3489 -7.9289 0.4089 22 35 6.1011 -6.3979 -0.4073 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8728 -3.6047 0.8878 27 1 2.8714 -3.6039 -0.8922 28 1 2.6182 -6.9854 -0.7649 29 1 2.8391 -6.4761 2.0680 30 1 4.1468 -5.7121 1.1330 31 1 3.7327 -10.9361 2.0779 32 1 5.8954 -11.2124 0.9328 33 1 6.9494 -9.2465 -0.1641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622675370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:47 Heat of formation + Delta-G solvation = -67.213382 kcal Electronic energy + Delta-G solvation = -19856.821356 eV Core-core repulsion = 16475.734375 eV Total energy + Delta-G solvation = -3381.086981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39965 -38.19052 -37.05990 -36.62606 -35.87458 -34.21253 -33.10913 -32.83762 -30.65546 -27.57495 -27.41624 -24.34883 -23.59665 -23.20490 -20.40991 -19.17861 -18.58658 -17.97483 -17.81446 -17.11528 -17.02198 -16.52235 -16.28627 -15.98859 -15.19522 -15.07393 -14.73179 -14.42871 -14.37645 -13.91731 -13.70222 -13.30329 -13.21287 -13.11599 -12.89091 -12.78299 -12.70657 -12.39228 -12.20748 -12.15769 -11.73661 -11.48682 -11.16063 -10.78987 -10.61771 -10.59936 -10.39597 -9.95720 -8.23784 -6.37517 -0.76449 -0.21719 0.09630 0.47673 1.42043 1.45500 1.53485 1.80189 2.39612 2.61467 2.77178 3.02826 3.09706 3.26682 3.54755 3.74082 3.93117 3.98877 4.13637 4.17204 4.33347 4.38246 4.58288 4.65943 4.79055 4.87440 5.00881 5.29701 5.30869 5.48870 5.70602 5.94637 6.08536 6.75967 6.80838 7.32386 8.88364 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.003527 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.924627 B = 7936.985719 C = 9182.265136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.584 4.584 11 S 2.620 3.380 12 O -0.995 6.995 13 O -0.994 6.994 14 N -1.100 6.100 15 C 0.151 3.849 16 C 0.132 3.868 17 N -0.492 5.492 18 C 0.104 3.896 19 C -0.146 4.146 20 C -0.049 4.049 21 C -0.143 4.143 22 Br -0.027 7.027 23 H 0.267 0.733 24 H 0.007 0.993 25 H 0.008 0.992 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.422 0.578 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.191 0.809 32 H 0.185 0.815 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.399 -22.522 0.876 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.717 4.717 11 S 2.717 3.283 12 O -0.985 6.985 13 O -0.983 6.983 14 N -0.860 5.860 15 C 0.025 3.975 16 C -0.009 4.009 17 N -0.202 5.202 18 C -0.053 4.053 19 C -0.166 4.166 20 C -0.076 4.076 21 C -0.225 4.225 22 Br 0.058 6.942 23 H 0.076 0.924 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.257 0.743 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.208 0.792 32 H 0.203 0.797 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.754 -21.835 1.180 28.167 hybrid contribution 1.007 0.631 -0.555 1.312 sum 18.762 -21.205 0.625 28.320 Atomic orbital electron populations 1.70102 1.08062 1.28336 1.50927 1.26108 0.95833 1.03827 0.94451 0.85383 0.78143 0.77386 0.79457 1.18811 1.21085 1.18718 1.21487 0.94032 0.90691 1.51437 0.90471 1.18829 0.93597 0.92968 0.96477 1.30318 1.12793 1.15882 1.12720 1.04535 0.74483 0.76495 0.72792 1.93507 1.72738 1.85863 1.46422 1.93507 1.72562 1.85384 1.46893 1.55218 1.52065 1.51225 1.27528 1.20389 0.93396 0.93965 0.89796 1.20873 0.91230 0.94713 0.94057 1.67655 1.34739 0.99959 1.17864 1.23580 0.92726 0.94504 0.94518 1.22683 0.96102 1.01111 0.96713 1.22008 1.00170 0.89854 0.95557 1.23000 0.98756 0.95916 1.04863 1.96828 1.82563 1.35465 1.79310 0.92435 0.97489 0.97355 0.83638 0.83612 0.74288 0.88833 0.87931 0.79188 0.79729 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -29.73 9.11 25.60 0.23 -29.49 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.06 4.98 29.84 0.15 1.21 16 10 C -0.58 -22.06 6.01 71.98 0.43 -21.62 16 11 S 2.62 96.37 5.46 -56.49 -0.31 96.07 16 12 O -0.99 -42.66 18.08 -127.65 -2.31 -44.97 16 13 O -0.99 -43.00 17.49 -127.65 -2.23 -45.23 16 14 N -1.10 -29.77 5.88 -190.80 -1.12 -30.89 16 15 C 0.15 3.67 5.96 85.64 0.51 4.18 16 16 C 0.13 2.84 6.18 42.56 0.26 3.10 16 17 N -0.49 -10.63 10.27 -183.81 -1.89 -12.52 16 18 C 0.10 1.36 11.18 84.69 0.95 2.31 16 19 C -0.15 -1.19 10.11 22.36 0.23 -0.97 16 20 C -0.05 -0.54 9.94 22.48 0.22 -0.31 16 21 C -0.14 -2.45 6.24 22.40 0.14 -2.31 16 22 Br -0.03 -0.47 31.82 -20.37 -0.65 -1.12 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 24 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.15 4.70 8.14 -2.39 -0.02 4.68 16 27 H 0.15 4.79 8.14 -2.39 -0.02 4.77 16 28 H 0.42 10.03 8.61 -96.74 -0.83 9.19 16 29 H 0.09 2.48 7.69 -2.39 -0.02 2.46 16 30 H 0.10 2.14 6.64 -2.39 -0.02 2.13 16 31 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 33 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -79.50 324.06 -2.30 -81.80 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.31 Total: 12.03 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 3.59 Total: -43.66 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -2.72 Total: -100.29 kcal Atomic # 8 Polarization: -85.65 SS G_CDS: -4.54 Total: -90.20 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 96.37 SS G_CDS: -0.31 Total: 96.07 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -0.65 Total: -1.12 kcal Total: -79.50 -2.30 -81.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622675370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.583 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds