Wall clock time and date at job start Wed Apr 1 2020 05:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00198 * 2 1 4 4 H 1.48497 * 109.46900 * 239.99703 * 3 2 1 5 5 H 1.48500 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46761 * 119.99950 * 3 2 1 7 7 C 1.38801 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00068 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00160 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99947 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99907 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00254 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47336 * 180.02562 * 14 13 11 16 16 C 1.38708 * 120.39005 * 105.00215 * 15 14 13 17 17 C 1.38530 * 118.45987 * 179.97438 * 16 15 14 18 18 C 1.38535 * 119.16500 * 359.97438 * 17 16 15 19 19 F 1.35103 * 119.64819 * 180.02562 * 18 17 16 20 20 N 1.32044 * 120.70984 * 0.02562 * 18 17 16 21 21 C 1.32010 * 121.67517 * 0.02562 * 20 18 17 22 22 Br 1.89105 * 119.61186 * 179.97438 * 21 20 18 23 23 H 0.97005 * 120.00358 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47222 * 59.99695 * 10 9 7 25 25 H 1.09002 * 109.46744 * 300.00054 * 10 9 7 26 26 H 0.97002 * 120.00220 * 0.02562 * 13 11 10 27 27 H 1.09004 * 109.46724 * 59.99893 * 14 13 11 28 28 H 1.08997 * 109.47043 * 300.00512 * 14 13 11 29 29 H 1.07997 * 120.76951 * 359.95461 * 16 15 14 30 30 H 1.08005 * 120.41936 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8439 -6.3432 -0.0018 14 6 2.3302 -7.7151 -0.0019 15 6 3.4846 -8.6838 -0.0020 16 6 3.8231 -9.3722 1.1537 17 6 4.8911 -10.2533 1.1084 18 6 5.5810 -10.4173 -0.0817 19 9 6.6238 -11.2745 -0.1371 20 7 5.2303 -9.7448 -1.1627 21 6 4.2186 -8.8969 -1.1537 22 35 3.7673 -7.9639 -2.7355 23 1 -0.4851 0.8401 -0.0004 24 1 3.1243 -3.7315 0.8894 25 1 3.1243 -3.7314 -0.8906 26 1 3.8007 -6.1836 -0.0015 27 1 1.7211 -7.8750 -0.8916 28 1 1.7219 -7.8754 0.8883 29 1 3.2671 -9.2244 2.0677 30 1 5.1818 -10.8061 1.9895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635640723.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:29 Heat of formation + Delta-G solvation = -62.316355 kcal Electronic energy + Delta-G solvation = -18762.969303 eV Core-core repulsion = 15258.634368 eV Total energy + Delta-G solvation = -3504.334935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.22233 -41.62087 -40.40912 -36.38848 -34.56488 -34.19242 -33.43780 -31.47975 -30.44607 -27.72118 -26.99314 -24.90465 -23.47980 -21.80366 -19.87690 -19.24143 -18.68148 -17.99028 -17.58590 -17.26965 -16.85823 -16.52665 -16.03823 -15.77987 -15.57971 -15.17377 -14.81718 -14.63299 -14.42927 -14.34466 -14.19045 -13.33412 -13.14646 -13.13786 -12.85253 -12.61158 -12.12192 -11.73705 -11.53210 -11.29436 -11.11166 -11.04522 -10.91404 -10.25283 -10.14621 -10.05211 -8.63026 -8.32729 -6.09785 -0.61188 -0.22384 0.08415 1.29053 1.44808 1.48233 1.57855 1.65129 2.03961 2.29147 2.34953 2.47181 3.01420 3.18891 3.34664 3.39666 3.50701 3.90461 4.02106 4.12424 4.33225 4.47294 4.55796 4.67285 4.68784 4.87051 5.24638 5.33903 5.43890 6.08334 6.21585 6.44297 7.08903 7.22843 8.76041 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.002646 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.473354 B =10581.024486 C =10876.642967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.145 6.145 10 C -0.132 4.132 11 C 0.543 3.457 12 O -0.557 6.557 13 N -0.709 5.709 14 C 0.162 3.838 15 C -0.131 4.131 16 C -0.006 4.006 17 C -0.157 4.157 18 C 0.304 3.696 19 F -0.111 7.111 20 N -0.524 5.524 21 C 0.155 3.845 22 Br 0.004 6.996 23 H 0.271 0.729 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.411 0.589 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.198 0.802 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -23.558 2.071 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.082 5.918 10 C -0.283 4.283 11 C 0.329 3.671 12 O -0.435 6.435 13 N -0.362 5.362 14 C 0.039 3.961 15 C -0.136 4.136 16 C -0.032 4.032 17 C -0.177 4.177 18 C 0.149 3.851 19 F -0.090 7.090 20 N -0.240 5.240 21 C -0.062 4.062 22 Br 0.089 6.911 23 H 0.080 0.920 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.247 0.753 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.216 0.784 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.276 -23.637 0.699 26.198 hybrid contribution 2.026 0.950 0.496 2.292 sum 13.302 -22.686 1.195 26.326 Atomic orbital electron populations 1.70165 1.07899 1.28633 1.48001 1.26083 0.95933 1.03200 0.93806 0.85047 0.77846 0.75926 0.79458 1.18843 1.20455 1.18619 1.23184 0.95348 0.92188 1.58838 0.90010 1.85517 1.10283 0.98959 1.97038 1.23383 1.03659 0.94508 1.06757 1.19881 0.86073 0.86221 0.74964 1.90706 1.17038 1.85879 1.49846 1.45683 1.10153 1.04370 1.76041 1.20209 0.92629 0.78437 1.04848 1.20713 0.98599 1.00896 0.93431 1.21980 0.93419 0.89706 0.98118 1.22368 0.96160 1.00982 0.98237 1.18472 0.86557 0.89408 0.90647 1.91659 1.54549 1.66141 1.96687 1.66611 1.16896 1.08786 1.31750 1.22538 0.93763 0.96109 0.93750 1.96960 1.90888 1.71517 1.31754 0.92012 0.87077 0.87581 0.75253 0.90387 0.87986 0.78447 0.78645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.55 -30.80 9.50 67.95 0.65 -30.15 16 8 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -7.84 20.57 -56.49 -1.16 -9.00 16 10 C -0.13 -4.97 6.16 71.23 0.44 -4.54 16 11 C 0.54 18.29 7.85 87.66 0.69 18.98 16 12 O -0.56 -23.71 15.86 -3.02 -0.05 -23.76 16 13 N -0.71 -15.81 5.30 -466.80 -2.47 -18.28 16 14 C 0.16 2.96 5.08 85.63 0.44 3.40 16 15 C -0.13 -1.87 5.27 -19.76 -0.10 -1.97 16 16 C -0.01 -0.05 9.80 22.45 0.22 0.17 16 17 C -0.16 -1.22 10.08 22.41 0.23 -0.99 16 18 C 0.30 4.79 8.41 84.73 0.71 5.50 16 19 F -0.11 -1.88 17.29 44.97 0.78 -1.10 16 20 N -0.52 -10.86 10.34 -191.83 -1.98 -12.85 16 21 C 0.16 2.95 7.16 84.66 0.61 3.56 16 22 Br 0.00 0.09 32.09 -20.37 -0.65 -0.56 16 23 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 24 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 25 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 26 H 0.41 7.31 8.46 -92.71 -0.78 6.52 16 27 H 0.08 1.68 7.41 -2.38 -0.02 1.66 16 28 H 0.10 1.63 8.00 -2.39 -0.02 1.61 16 29 H 0.20 0.14 8.05 -2.91 -0.02 0.11 16 30 H 0.20 0.10 8.06 -2.91 -0.02 0.07 16 Total: -1.00 -76.89 312.72 1.53 -75.37 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 0.42 Total: 4.81 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 4.33 Total: -4.75 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -4.17 Total: -86.18 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.10 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.65 Total: -0.56 kcal Total: -76.89 1.53 -75.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635640723.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.052 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds