Wall clock time and date at job start Wed Apr 1 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46905 * 2 1 4 4 C 1.50700 * 109.47345 * 119.99742 * 2 1 3 5 5 H 1.07997 * 119.99684 * 120.00139 * 4 2 1 6 6 C 1.37875 * 120.00139 * 300.00253 * 4 2 1 7 7 N 1.31508 * 120.00213 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99971 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47384 * 89.99796 * 8 6 4 10 10 H 1.48504 * 109.47360 * 209.99897 * 8 6 4 11 11 H 1.48507 * 109.47012 * 329.99543 * 8 6 4 12 12 N 1.46894 * 109.47293 * 240.00067 * 2 1 3 13 13 C 1.46901 * 111.00307 * 183.94966 * 12 2 1 14 14 C 1.38582 * 111.00026 * 59.99941 * 12 2 1 15 15 N 1.31220 * 126.47374 * 58.96857 * 14 12 2 16 16 N 1.28526 * 109.85683 * 179.97438 * 15 14 12 17 17 C 1.30297 * 110.05737 * 0.02562 * 16 15 14 18 18 C 1.50702 * 126.34588 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47293 * 90.02486 * 18 17 16 20 20 C 1.53129 * 109.43017 * 179.59659 * 19 18 17 21 21 C 1.53714 * 108.88536 * 66.06331 * 20 19 18 22 22 H 1.09003 * 112.12302 * 188.36797 * 21 20 19 23 23 C 1.54605 * 107.81374 * 312.37736 * 21 20 19 24 24 C 1.54297 * 104.83970 * 88.56190 * 23 21 20 25 25 C 1.54605 * 104.83955 * 359.97438 * 24 23 21 26 26 H 1.09002 * 112.21728 * 146.86611 * 25 24 23 27 27 C 1.53142 * 109.42733 * 299.86100 * 19 18 17 28 28 N 1.48711 * 107.24002 * 64.09276 * 21 20 19 29 29 C 1.46902 * 111.00375 * 168.34453 * 28 21 20 30 30 N 1.36450 * 126.47323 * 238.65955 * 14 12 2 31 31 C 1.46505 * 127.13582 * 0.03603 * 30 14 12 32 32 H 1.08999 * 109.46905 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47063 * 299.99780 * 1 2 3 34 34 H 1.08995 * 109.47598 * 59.99981 * 1 2 3 35 35 H 0.96998 * 120.00608 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.47171 * 302.20171 * 13 12 2 37 37 H 1.09007 * 109.46777 * 62.19756 * 13 12 2 38 38 H 1.09000 * 109.47520 * 182.19560 * 13 12 2 39 39 H 1.08999 * 109.46785 * 210.02388 * 18 17 16 40 40 H 1.09006 * 109.47053 * 330.02315 * 18 17 16 41 41 H 1.09004 * 109.42874 * 59.69799 * 19 18 17 42 42 H 1.08995 * 109.57263 * 185.88624 * 20 19 18 43 43 H 1.09003 * 109.56864 * 306.12935 * 20 19 18 44 44 H 1.08993 * 110.36829 * 207.39931 * 23 21 20 45 45 H 1.08998 * 110.36449 * 329.61907 * 23 21 20 46 46 H 1.08994 * 110.36256 * 118.84155 * 24 23 21 47 47 H 1.09003 * 110.36298 * 241.05260 * 24 23 21 48 48 H 1.08999 * 109.56780 * 53.75599 * 27 19 18 49 49 H 1.08994 * 109.56987 * 174.11269 * 27 19 18 50 50 H 1.09003 * 109.46992 * 59.99366 * 29 28 21 51 51 H 1.08994 * 109.47510 * 179.97438 * 29 28 21 52 52 H 1.09009 * 109.46618 * 299.99716 * 29 28 21 53 53 H 1.08997 * 109.47430 * 95.09726 * 31 30 14 54 54 H 1.09002 * 109.47133 * 215.09719 * 31 30 14 55 55 H 1.09002 * 109.47083 * 335.09053 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9757 1.9952 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1871 14 6 1.5753 -0.0641 -2.3519 15 7 1.8023 1.1810 -2.6984 16 7 1.2417 1.4289 -3.8281 17 6 0.6284 0.3656 -4.2655 18 6 -0.1474 0.2478 -5.5520 19 6 0.7904 -0.2028 -6.6737 20 6 -0.0009 -0.3320 -7.9783 21 6 -0.4827 1.0630 -8.4082 22 1 -1.1736 1.0173 -9.2500 23 6 -1.1110 1.7479 -7.1727 24 6 0.0656 2.4628 -6.4762 25 6 1.2979 2.1443 -7.3538 26 1 2.0176 2.9629 -7.3664 27 6 1.9090 0.8286 -6.8476 28 7 0.7274 1.8763 -8.7010 29 6 0.3685 3.1286 -9.3799 30 7 0.8241 -0.6248 -3.3434 31 6 0.3269 -2.0015 -3.4052 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.9033 -0.5279 4.4375 36 1 3.9182 0.2036 -1.1197 37 1 3.8009 -1.3862 -0.3278 38 1 3.8236 -1.2763 -2.1043 39 1 -0.9453 -0.4847 -5.4293 40 1 -0.5789 1.2160 -5.8061 41 1 1.2256 -1.1686 -6.4165 42 1 0.6395 -0.7521 -8.7538 43 1 -0.8600 -0.9843 -7.8212 44 1 -1.8647 2.4717 -7.4826 45 1 -1.5510 1.0035 -6.5092 46 1 -0.1097 3.5381 -6.4436 47 1 0.2045 2.0711 -5.4685 48 1 2.4005 0.9990 -5.8897 49 1 2.6354 0.4607 -7.5722 50 1 -0.2974 3.7098 -8.7419 51 1 1.2717 3.7043 -9.5818 52 1 -0.1355 2.9011 -10.3193 53 1 -0.6904 -2.0384 -3.0157 54 1 0.3323 -2.3436 -4.4401 55 1 0.9691 -2.6470 -2.8059 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646664383.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:54 Heat of formation + Delta-G solvation = 186.166981 kcal Electronic energy + Delta-G solvation = -33383.633909 eV Core-core repulsion = 29460.985780 eV Total energy + Delta-G solvation = -3922.648128 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.20817 -42.71923 -38.98151 -36.24970 -35.64933 -34.80768 -32.86611 -32.44322 -32.24442 -31.16303 -29.01135 -28.29945 -27.36876 -26.23908 -25.79047 -25.05230 -23.57398 -22.86581 -21.77404 -21.20499 -21.07258 -19.94548 -18.98793 -17.99869 -17.70292 -17.60883 -16.88739 -16.64282 -16.29940 -15.71428 -15.36336 -15.22651 -15.18078 -15.10250 -14.55639 -14.42211 -14.23536 -14.08021 -13.87892 -13.82005 -13.65219 -13.52752 -13.46571 -13.34669 -12.98192 -12.86059 -12.78604 -12.73764 -12.53336 -12.35570 -12.18964 -11.87299 -11.74840 -11.60794 -11.58852 -11.48614 -11.29256 -11.20124 -11.06893 -10.95121 -10.80687 -10.22787 -9.78433 -9.63169 -9.39872 -8.34997 -6.38536 0.80430 1.22270 1.31863 1.39405 1.41654 1.84952 2.25006 2.89896 3.00964 3.03890 3.36929 3.64067 3.75274 3.82620 3.89584 4.03723 4.05436 4.13515 4.21234 4.28463 4.32843 4.38535 4.39277 4.41933 4.43400 4.45232 4.46744 4.50077 4.57953 4.61561 4.67634 4.70269 4.78045 4.82418 4.85638 4.86803 4.98555 5.01223 5.03463 5.07742 5.11808 5.16964 5.20043 5.21066 5.22601 5.29968 5.32502 5.37572 5.41813 5.45312 5.74450 5.85283 5.96887 6.17889 6.22417 6.58274 6.66392 7.25514 7.79904 8.80047 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.002798 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.797130 B =10005.685488 C =10302.008356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.204 3.796 3 H -0.008 1.008 4 C -0.508 4.508 5 H 0.062 0.938 6 C 0.031 3.969 7 N -0.934 5.934 8 Si 0.932 3.068 9 H -0.261 1.261 10 H -0.291 1.291 11 H -0.269 1.269 12 N -0.458 5.458 13 C 0.056 3.944 14 C 0.348 3.652 15 N -0.359 5.359 16 N -0.322 5.322 17 C 0.191 3.809 18 C -0.147 4.147 19 C -0.067 4.067 20 C -0.095 4.095 21 C 0.065 3.935 22 H 0.113 0.887 23 C -0.180 4.180 24 C -0.197 4.197 25 C 0.075 3.925 26 H 0.076 0.924 27 C -0.102 4.102 28 N -0.515 5.515 29 C 0.011 3.989 30 N -0.467 5.467 31 C 0.072 3.928 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.269 0.731 36 H 0.020 0.980 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.214 0.786 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.055 0.945 47 H 0.119 0.881 48 H 0.042 0.958 49 H 0.064 0.936 50 H 0.030 0.970 51 H 0.062 0.938 52 H 0.080 0.920 53 H 0.090 0.910 54 H 0.117 0.883 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 0.007 -28.643 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.097 3.903 3 H 0.010 0.990 4 C -0.546 4.546 5 H 0.080 0.920 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.760 3.240 9 H -0.186 1.186 10 H -0.219 1.219 11 H -0.194 1.194 12 N -0.184 5.184 13 C -0.091 4.091 14 C -0.009 4.009 15 N -0.202 5.202 16 N -0.162 5.162 17 C -0.077 4.077 18 C -0.183 4.183 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.043 4.043 22 H 0.131 0.869 23 C -0.217 4.217 24 C -0.235 4.235 25 C -0.033 4.033 26 H 0.094 0.906 27 C -0.140 4.140 28 N -0.238 5.238 29 C -0.137 4.137 30 N -0.159 5.159 31 C -0.069 4.069 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.229 0.771 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.136 0.864 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.081 0.919 52 H 0.099 0.901 53 H 0.109 0.891 54 H 0.135 0.865 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.030 0.612 -28.748 30.139 hybrid contribution -0.472 0.700 1.641 1.846 sum -9.502 1.312 -27.107 28.755 Atomic orbital electron populations 1.21985 0.97001 1.01524 0.98493 1.19509 0.92439 0.91800 0.86583 0.99024 1.21014 1.31726 1.12968 0.88894 0.92022 1.25478 0.96953 0.98969 0.95478 1.69954 1.46999 1.41850 0.98520 0.86116 0.80038 0.80861 0.77019 1.18648 1.21870 1.19417 1.58869 1.12403 1.49440 0.97646 1.22179 0.83885 1.00405 1.02625 1.22569 0.97499 0.88904 0.91964 1.74557 1.22882 1.13477 1.09303 1.73737 1.12886 1.24021 1.05573 1.25726 1.01892 0.84458 0.95601 1.23944 0.97024 1.12926 0.84389 1.20969 0.95136 0.98036 0.94490 1.21715 1.00362 0.95959 0.95253 1.23158 0.90819 0.93849 0.96483 0.86950 1.23693 0.97866 1.01208 0.98973 1.23918 0.95747 1.00626 1.03227 1.22778 0.95978 0.96809 0.87761 0.90560 1.21632 0.97811 0.94965 0.99616 1.65449 1.24384 1.16655 1.17305 1.22496 1.00728 0.91463 0.99042 1.46521 1.39425 1.13656 1.16290 1.22305 1.01492 0.77228 1.05889 0.91341 0.94060 0.95057 0.92158 0.96123 0.89940 0.90948 0.88096 0.77065 0.91491 0.90691 0.88758 0.90678 0.86403 0.92660 0.86360 0.93897 0.91739 0.95183 0.91922 0.90145 0.89126 0.86455 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.55 71.98 0.62 -5.30 16 2 C 0.20 9.98 1.58 44.17 0.07 10.05 16 3 H -0.01 -0.43 7.14 -2.39 -0.02 -0.45 16 4 C -0.51 -28.20 8.53 25.60 0.22 -27.98 16 5 H 0.06 3.67 6.64 -2.91 -0.02 3.65 16 6 C 0.03 1.74 5.45 84.65 0.46 2.20 16 7 N -0.93 -56.53 13.96 21.45 0.30 -56.23 16 8 Si 0.93 45.63 24.37 68.60 1.67 47.30 16 9 H -0.26 -11.97 6.87 99.48 0.68 -11.28 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.27 -13.29 6.53 99.48 0.65 -12.64 16 12 N -0.46 -19.39 4.63 -711.00 -3.29 -22.68 16 13 C 0.06 2.27 9.14 127.69 1.17 3.44 16 14 C 0.35 13.60 5.03 260.11 1.31 14.90 16 15 N -0.36 -15.39 12.12 -58.00 -0.70 -16.09 16 16 N -0.32 -11.67 9.61 -49.54 -0.48 -12.15 16 17 C 0.19 5.34 6.03 137.64 0.83 6.17 16 18 C -0.15 -2.53 2.91 29.85 0.09 -2.44 16 19 C -0.07 -1.05 2.70 -10.70 -0.03 -1.08 16 20 C -0.10 -1.02 5.37 30.88 0.17 -0.85 16 21 C 0.07 0.75 3.67 45.35 0.17 0.92 16 22 H 0.11 0.92 8.11 -2.39 -0.02 0.90 16 23 C -0.18 -2.23 5.06 31.58 0.16 -2.07 16 24 C -0.20 -3.77 5.02 31.58 0.16 -3.62 16 25 C 0.08 1.50 3.68 45.32 0.17 1.67 16 26 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 27 C -0.10 -2.18 5.24 30.86 0.16 -2.02 16 28 N -0.52 -8.20 5.29 -853.47 -4.51 -12.71 16 29 C 0.01 0.15 9.46 127.69 1.21 1.36 16 30 N -0.47 -13.82 3.21 -538.17 -1.73 -15.55 16 31 C 0.07 1.44 10.89 127.77 1.39 2.84 16 32 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 33 H 0.04 1.89 3.27 -2.38 -0.01 1.88 16 34 H 0.03 1.31 7.22 -2.39 -0.02 1.30 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 3.49 6.32 -2.38 -0.02 3.47 16 38 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 39 H 0.10 1.18 7.83 -2.39 -0.02 1.16 16 40 H 0.21 3.62 1.11 -110.73 -0.12 3.50 16 41 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 45 H 0.12 1.20 4.84 -2.39 -0.01 1.19 16 46 H 0.05 1.11 8.01 -2.39 -0.02 1.09 16 47 H 0.12 2.82 2.57 -2.39 -0.01 2.81 16 48 H 0.04 1.20 6.32 -2.39 -0.02 1.19 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.03 0.41 6.88 -2.39 -0.02 0.39 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 53 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 54 H 0.12 1.44 8.06 -2.39 -0.02 1.42 16 55 H 0.09 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -71.73 390.34 0.26 -71.48 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.69 Total: 18.45 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 8.31 Total: -1.82 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -10.41 Total: -135.41 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.67 Total: 47.30 kcal Total: -71.73 0.26 -71.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646664383.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.645 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds